View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2931-Insertion-11 (Length: 222)
Name: NF2931-Insertion-11
Description: NF2931
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2931-Insertion-11 |
 | |
|
| [»] chr8 (6 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 190; Significance: 1e-103; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 8 - 222
Target Start/End: Complemental strand, 15215114 - 15214900
Alignment:
| Q |
8 |
acaaatatgaaagaagaccaatcaagggatggacaagaaacaactagcaaagtaaacaaggtaagccatgattataataacctaatcttgtcacttccta |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15215114 |
acaaatatgaaagaagaccaatcaagggatggacaagaaacaactagcaaagtaaacaaggtaagccatgattataataacctaatcttgtcacttccta |
15215015 |
T |
|
| Q |
108 |
gagaaaatgggtgtgagactcaatatatgtannnnnnncatggattttggtgtccatcaactcttattcaatctgtgaactcttttcaaaataattttca |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15215014 |
gagaaaatgggtgtgagactcaatatatgtatttttttcatggattttggtgtccatcaactcttattcaatctgtgaactcttttcaaaataattttca |
15214915 |
T |
|
| Q |
208 |
tgctaaagacggtga |
222 |
Q |
| |
|
|||||||||| |||| |
|
|
| T |
15214914 |
tgctaaagacagtga |
15214900 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 8 - 216
Target Start/End: Original strand, 15066329 - 15066537
Alignment:
| Q |
8 |
acaaatatgaaagaagaccaatcaagggatggacaagaaacaactagcaaagtaaacaaggtaagccatgattataataacctaatcttgtcacttccta |
107 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||| ||| ||||||||||| ||||||||||||||||||||||||||| ||||||| |
|
|
| T |
15066329 |
acaaatatgaaagaagaccaatcaagggatggacaagaaacaattagcgaagaaaacaaggtaatccatgattataataacctaatcttgtctcttccta |
15066428 |
T |
|
| Q |
108 |
gagaaaatgggtgtgagactcaatatatgtannnnnnncatggattttggtgtccatcaactcttattcaatctgtgaactcttttcaaaataattttca |
207 |
Q |
| |
|
|||||||||| ||||| ||||||||| | || ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
15066429 |
gagaaaatggatgtgatactcaatatttttatttttatcatggattttggtgtccatcaactcttatccaatctgtgaactcttttcaaaataattttca |
15066528 |
T |
|
| Q |
208 |
tgctaaaga |
216 |
Q |
| |
|
||| ||||| |
|
|
| T |
15066529 |
tgccaaaga |
15066537 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 61 - 217
Target Start/End: Original strand, 13033051 - 13033207
Alignment:
| Q |
61 |
aaacaaggtaagccatgattataataacctaatcttgtcacttcctagagaaaatgggtgtgagactcaatatatgtannnnnnncatggattttggtgt |
160 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||| |
|
|
| T |
13033051 |
aaacaaggtaatccatgattataataacctaatcttgtcacttcctagagaaaatgggtgtgagactgaatatatgtatttttttcatggattttggtgt |
13033150 |
T |
|
| Q |
161 |
ccatcaactcttattcaatctgtgaactcttttcaaaataattttcatgctaaagac |
217 |
Q |
| |
|
|||||| |||||| |||||||| ||| ||||||||||||| |||||||| |||||| |
|
|
| T |
13033151 |
ccatcatatcttatccaatctgtcaacacttttcaaaataaatttcatgccaaagac |
13033207 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 12 - 222
Target Start/End: Original strand, 15052128 - 15052341
Alignment:
| Q |
12 |
atatgaaagaagaccaatcaagggatggacaagaaacaactagcaaagtaaacaaggtaagccatgattataataacctaatcttgtcacttcctagaga |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| || |||| ||| ||||||||||| ||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
15052128 |
atatgaaagaagaccaatcaagggatggacaagaaaaaattagcgaagaaaacaaggtaatccatgattataataacctaatcttgtctcttcctagaga |
15052227 |
T |
|
| Q |
112 |
a---aatgggtgtgagactcaatatatgtannnnnnncatggattttggtgtccatcaactcttattcaatctgtgaactcttttcaaaataattttcat |
208 |
Q |
| |
|
| |||||| || | ||||||| |||| |||| ||||||||||||||| || |||| |||||| || |||||||||||||||||||||| |
|
|
| T |
15052228 |
agatgatgggtctgtaagtcaatatttgtatttttatcatgaattttggtgtccatctacatttatccaatctacgatctcttttcaaaataattttcat |
15052327 |
T |
|
| Q |
209 |
gctaaagacggtga |
222 |
Q |
| |
|
||||||||| |||| |
|
|
| T |
15052328 |
gctaaagacagtga |
15052341 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 8 - 120
Target Start/End: Original strand, 15076282 - 15076394
Alignment:
| Q |
8 |
acaaatatgaaagaagaccaatcaagggatggacaagaaacaactagcaaagtaaacaaggtaagccatgattataataacctaatcttgtcacttccta |
107 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||| ||| ||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
15076282 |
acaaatatgaaagaagaccaatcaagggatggacaagaaacaattagcgaagaaaacaaggtaatccatgattataataacctaatcttgtcacttccta |
15076381 |
T |
|
| Q |
108 |
gagaaaatgggtg |
120 |
Q |
| |
|
|||||||||||| |
|
|
| T |
15076382 |
aagaaaatgggtg |
15076394 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 65 - 205
Target Start/End: Original strand, 15047402 - 15047544
Alignment:
| Q |
65 |
aaggtaagccatgattataat-aacctaatcttgtcacttcctagagaaaatgggtgtgagactcaatatatgtannnnnnn-catggattttggtgtcc |
162 |
Q |
| |
|
|||||||| |||||||||||| || |||| ||||||||| ||||||||||||||| | || |||||| |||| ||||||||| |||||| |
|
|
| T |
15047402 |
aaggtaagtcatgattataatgaagttaatattgtcacttgctagagaaaatgggtctctaacccaatatttgtattttttttcatggatttctgtgtcc |
15047501 |
T |
|
| Q |
163 |
atcaactcttattcaatctgtgaactcttttcaaaataatttt |
205 |
Q |
| |
|
|||||||||||| ||||| | ||||||||||||||| ||||| |
|
|
| T |
15047502 |
atcaactcttatccaatccataaactcttttcaaaattatttt |
15047544 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University