View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2931-Insertion-13 (Length: 106)

Name: NF2931-Insertion-13
Description: NF2931
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2931-Insertion-13
NF2931-Insertion-13
[»] chr4 (4 HSPs)
chr4 (12-106)||(41943126-41943220)
chr4 (12-106)||(10344753-10344855)
chr4 (12-62)||(3295290-3295341)
chr4 (15-59)||(31519209-31519254)
[»] chr8 (5 HSPs)
chr8 (12-63)||(9818286-9818337)
chr8 (12-62)||(21231957-21232007)
chr8 (12-57)||(42077580-42077625)
chr8 (78-106)||(42077624-42077652)
chr8 (15-61)||(24423220-24423267)
[»] chr7 (4 HSPs)
chr7 (12-63)||(10530249-10530300)
chr7 (12-59)||(9745123-9745170)
chr7 (12-62)||(29587570-29587621)
chr7 (12-60)||(13167881-13167930)
[»] chr2 (6 HSPs)
chr2 (12-76)||(27977259-27977323)
chr2 (12-76)||(28063787-28063851)
chr2 (15-60)||(28497303-28497349)
chr2 (15-59)||(16131192-16131237)
chr2 (12-45)||(29046669-29046702)
chr2 (12-58)||(22403747-22403794)
[»] chr3 (4 HSPs)
chr3 (12-106)||(15990278-15990381)
chr3 (13-59)||(29453643-29453689)
chr3 (12-60)||(52641440-52641489)
chr3 (12-61)||(40888798-40888848)
[»] chr1 (2 HSPs)
chr1 (12-55)||(31654683-31654726)
chr1 (15-60)||(13380332-13380378)
[»] scaffold0016 (1 HSPs)
scaffold0016 (12-51)||(107863-107902)
[»] scaffold0022 (1 HSPs)
scaffold0022 (12-58)||(2023-2069)
[»] scaffold0259 (1 HSPs)
scaffold0259 (15-63)||(2614-2663)


Alignment Details
Target: chr4 (Bit Score: 83; Significance: 8e-40; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 83; E-Value: 8e-40
Query Start/End: Original strand, 12 - 106
Target Start/End: Original strand, 41943126 - 41943220
Alignment:
Q  12 aatctatcattttcatttaaacatggtcaagactagagcccttaccttagatactctccttcctagccgaataacctctaaatttatacgcatca 106  Q
    |||||||||||||||||||||||||||||||||||||||| || |||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  41943126 aatctatcattttcatttaaacatggtcaagactagagcctttgccttagatgctctccttcctagccgaataacctctaaatttatacgcatca 41943220  T

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Target: chr4; HSP #2
Raw Score: 50; E-Value: 4e-20
Query Start/End: Original strand, 12 - 106
Target Start/End: Original strand, 10344753 - 10344855
Alignment:
Q  12 aatctatcattttcatttaaacatggtcaagactagagcccttac--------cttagatactctccttcctagccgaataacctctaaatttatacgca 103  Q
    ||||||||||||||||||||| ||||||||||||||| |||||||        ||||||| ||||||||||||  |||||||||| ||||||||||||||    
T  10344753 aatctatcattttcatttaaaaatggtcaagactagaacccttaccttagatgcttagatgctctccttcctaatcgaataacctttaaatttatacgca 10344852  T
Q  104 tca 106  Q
    |||    
T  10344853 tca 10344855  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000002
Query Start/End: Original strand, 12 - 62
Target Start/End: Complemental strand, 3295341 - 3295290
Alignment:
Q  12 aatctatcattttcatttaaa-catggtcaagactagagcccttaccttaga 62  Q
    ||||||||| ||||| ||||| |||||||||||||||||| |||||||||||    
T  3295341 aatctatcagtttcacttaaatcatggtcaagactagagctcttaccttaga 3295290  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000003
Query Start/End: Original strand, 15 - 59
Target Start/End: Original strand, 31519209 - 31519254
Alignment:
Q  15 ctatcattttcatttaaa-catggtcaagactagagcccttacctt 59  Q
    |||||||||||| ||||| ||||||||||||||||||| |||||||    
T  31519209 ctatcattttcaattaaatcatggtcaagactagagcctttacctt 31519254  T

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Target: chr8 (Bit Score: 52; Significance: 2e-21; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 2e-21
Query Start/End: Original strand, 12 - 63
Target Start/End: Original strand, 9818286 - 9818337
Alignment:
Q  12 aatctatcattttcatttaaacatggtcaagactagagcccttaccttagat 63  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9818286 aatctatcattttcatttaaacatggtcaagactagagcccttaccttagat 9818337  T

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Target: chr8; HSP #2
Raw Score: 43; E-Value: 6e-16
Query Start/End: Original strand, 12 - 62
Target Start/End: Original strand, 21231957 - 21232007
Alignment:
Q  12 aatctatcattttcatttaaacatggtcaagactagagcccttaccttaga 62  Q
    ||||||||||||||||||||||| |||||||||||||||| ||||||||||    
T  21231957 aatctatcattttcatttaaacacggtcaagactagagccattaccttaga 21232007  T

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Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000001
Query Start/End: Original strand, 12 - 57
Target Start/End: Original strand, 42077580 - 42077625
Alignment:
Q  12 aatctatcattttcatttaaacatggtcaagactagagcccttacc 57  Q
    ||||||||||| ||||||||||||||||||||||||| ||| ||||    
T  42077580 aatctatcattctcatttaaacatggtcaagactagaacccctacc 42077625  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000001
Query Start/End: Original strand, 78 - 106
Target Start/End: Original strand, 42077624 - 42077652
Alignment:
Q  78 ccgaataacctctaaatttatacgcatca 106  Q
    |||||||||||||||||||||||||||||    
T  42077624 ccgaataacctctaaatttatacgcatca 42077652  T

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Target: chr8; HSP #5
Raw Score: 28; E-Value: 0.0000005
Query Start/End: Original strand, 15 - 61
Target Start/End: Complemental strand, 24423267 - 24423220
Alignment:
Q  15 ctatcattttcatttaaa-catggtcaagactagagcccttaccttag 61  Q
    |||||||||||| ||||| ||||||||||||||| | |||||||||||    
T  24423267 ctatcattttcagttaaatcatggtcaagactagggtccttaccttag 24423220  T

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Target: chr7 (Bit Score: 52; Significance: 2e-21; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 2e-21
Query Start/End: Original strand, 12 - 63
Target Start/End: Original strand, 10530249 - 10530300
Alignment:
Q  12 aatctatcattttcatttaaacatggtcaagactagagcccttaccttagat 63  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10530249 aatctatcattttcatttaaacatggtcaagactagagcccttaccttagat 10530300  T

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Target: chr7; HSP #2
Raw Score: 44; E-Value: 1e-16
Query Start/End: Original strand, 12 - 59
Target Start/End: Complemental strand, 9745170 - 9745123
Alignment:
Q  12 aatctatcattttcatttaaacatggtcaagactagagcccttacctt 59  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||    
T  9745170 aatctatcattttcctttaaacatggtcaagactagagcccttacctt 9745123  T

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Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.00000000000003
Query Start/End: Original strand, 12 - 62
Target Start/End: Complemental strand, 29587621 - 29587570
Alignment:
Q  12 aatctatcattttcatttaaa-catggtcaagactagagcccttaccttaga 62  Q
    ||||||||||||||||| ||| ||||||||||||||||||||||||||||||    
T  29587621 aatctatcattttcattcaaatcatggtcaagactagagcccttaccttaga 29587570  T

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Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.0000000000005
Query Start/End: Original strand, 12 - 60
Target Start/End: Complemental strand, 13167930 - 13167881
Alignment:
Q  12 aatctatcattttcatttaaa-catggtcaagactagagcccttacctta 60  Q
    ||||||||||||||| ||||| ||||||||||||||||||||||||||||    
T  13167930 aatctatcattttcacttaaatcatggtcaagactagagcccttacctta 13167881  T

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Target: chr2 (Bit Score: 49; Significance: 1e-19; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 1e-19
Query Start/End: Original strand, 12 - 76
Target Start/End: Original strand, 27977259 - 27977323
Alignment:
Q  12 aatctatcattttcatttaaacatggtcaagactagagcccttaccttagatactctccttccta 76  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||  || |||||||||    
T  27977259 aatctatcattttcatttaaacatggttaagactagagcccttaccttagacgctttccttccta 27977323  T

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Target: chr2; HSP #2
Raw Score: 49; E-Value: 1e-19
Query Start/End: Original strand, 12 - 76
Target Start/End: Original strand, 28063787 - 28063851
Alignment:
Q  12 aatctatcattttcatttaaacatggtcaagactagagcccttaccttagatactctccttccta 76  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||  || |||||||||    
T  28063787 aatctatcattttcatttaaacatggttaagactagagcccttaccttagacgctttccttccta 28063851  T

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Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.00000000003
Query Start/End: Original strand, 15 - 60
Target Start/End: Original strand, 28497303 - 28497349
Alignment:
Q  15 ctatcattttcatttaaa-catggtcaagactagagcccttacctta 60  Q
    |||||||||||| ||||| ||||||||||||||||||||||||||||    
T  28497303 ctatcattttcaattaaatcatggtcaagactagagcccttacctta 28497349  T

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Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000001
Query Start/End: Original strand, 15 - 59
Target Start/End: Original strand, 16131192 - 16131237
Alignment:
Q  15 ctatcattttcatttaaac-atggtcaagactagagcccttacctt 59  Q
    |||||||||||| |||||| ||||||||||||||||||||||||||    
T  16131192 ctatcattttcaattaaaccatggtcaagactagagcccttacctt 16131237  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000003
Query Start/End: Original strand, 12 - 45
Target Start/End: Original strand, 29046669 - 29046702
Alignment:
Q  12 aatctatcattttcatttaaacatggtcaagact 45  Q
    |||||||||||||||||||||||||||| |||||    
T  29046669 aatctatcattttcatttaaacatggtctagact 29046702  T

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Target: chr2; HSP #6
Raw Score: 28; E-Value: 0.0000005
Query Start/End: Original strand, 12 - 58
Target Start/End: Complemental strand, 22403794 - 22403747
Alignment:
Q  12 aatctatcattttcatttaaa-catggtcaagactagagcccttacct 58  Q
    ||||||| ||||||| ||||| |||||| |||||||||||||||||||    
T  22403794 aatctattattttcagttaaatcatggtaaagactagagcccttacct 22403747  T

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Target: chr3 (Bit Score: 47; Significance: 2e-18; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 2e-18
Query Start/End: Original strand, 12 - 106
Target Start/End: Original strand, 15990278 - 15990381
Alignment:
Q  12 aatctatcattttcatttaaa-catggtcaagactagagcccttaccttagata--------ctctccttcctagccgaataacctctaaatttatacgc 102  Q
    ||||||||||||||| ||||| ||||||||||||||||||||||||||||||||        ||||||||| ||| |||||||||| ||||| |||||||    
T  15990278 aatctatcattttcagttaaatcatggtcaagactagagcccttaccttagatacttagatgctctccttcttagtcgaataacctttaaatctatacgc 15990377  T
Q  103 atca 106  Q
    ||||    
T  15990378 atca 15990381  T

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Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000001
Query Start/End: Original strand, 13 - 59
Target Start/End: Complemental strand, 29453689 - 29453643
Alignment:
Q  13 atctatcattttcatttaaacatggtcaagactagagcccttacctt 59  Q
    ||||||||||||||||||||||||||||| ||||||| |||||||||    
T  29453689 atctatcattttcatttaaacatggtcaaaactagagtccttacctt 29453643  T

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Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000001
Query Start/End: Original strand, 12 - 60
Target Start/End: Original strand, 52641440 - 52641489
Alignment:
Q  12 aatctatcattttcatttaaa-catggtcaagactagagcccttacctta 60  Q
    ||||||||||||||| ||||| ||||||||| ||||||||||||||||||    
T  52641440 aatctatcattttcaattaaatcatggtcaaaactagagcccttacctta 52641489  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.000000008
Query Start/End: Original strand, 12 - 61
Target Start/End: Original strand, 40888798 - 40888848
Alignment:
Q  12 aatctatcattttcatttaaa-catggtcaagactagagcccttaccttag 61  Q
    ||||||||||||||| ||||| ||||| ||||||||| |||||||||||||    
T  40888798 aatctatcattttcaattaaatcatggccaagactagggcccttaccttag 40888848  T

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Target: chr1 (Bit Score: 44; Significance: 1e-16; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 1e-16
Query Start/End: Original strand, 12 - 55
Target Start/End: Original strand, 31654683 - 31654726
Alignment:
Q  12 aatctatcattttcatttaaacatggtcaagactagagccctta 55  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  31654683 aatctatcattttcatttaaacatggtcaagactagagccctta 31654726  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.000000008
Query Start/End: Original strand, 15 - 60
Target Start/End: Original strand, 13380332 - 13380378
Alignment:
Q  15 ctatcattttcatttaaa-catggtcaagactagagcccttacctta 60  Q
    |||||||||||| ||||| |||||||||||||||| |||||||||||    
T  13380332 ctatcattttcacttaaatcatggtcaagactagaacccttacctta 13380378  T

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Target: scaffold0016 (Bit Score: 40; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 40; E-Value: 0.00000000000003
Query Start/End: Original strand, 12 - 51
Target Start/End: Complemental strand, 107902 - 107863
Alignment:
Q  12 aatctatcattttcatttaaacatggtcaagactagagcc 51  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  107902 aatctatcattttcatttaaacatggtcaagactagagcc 107863  T

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Target: scaffold0022 (Bit Score: 35; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 35; E-Value: 0.00000000003
Query Start/End: Original strand, 12 - 58
Target Start/End: Complemental strand, 2069 - 2023
Alignment:
Q  12 aatctatcattttcatttaaacatggtcaagactagagcccttacct 58  Q
    |||||||  |||||||||||| |||||||||||||||||||||||||    
T  2069 aatctattgttttcatttaaatatggtcaagactagagcccttacct 2023  T

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Target: scaffold0259 (Bit Score: 34; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0259
Description:

Target: scaffold0259; HSP #1
Raw Score: 34; E-Value: 0.0000000001
Query Start/End: Original strand, 15 - 63
Target Start/End: Original strand, 2614 - 2663
Alignment:
Q  15 ctatcattttcatttaaa-catggtcaagactagagcccttaccttagat 63  Q
    |||||||||||| ||||| ||||||||| |||||||||||||||||||||    
T  2614 ctatcattttcaattaaatcatggtcaaaactagagcccttaccttagat 2663  T

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