View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2931-Insertion-2 (Length: 915)

Name: NF2931-Insertion-2
Description: NF2931
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2931-Insertion-2
NF2931-Insertion-2
[»] chr6 (7 HSPs)
chr6 (76-406)||(14003527-14003853)
chr6 (615-785)||(23667396-23667566)
chr6 (81-242)||(13871080-13871243)
chr6 (626-756)||(21272962-21273092)
chr6 (400-473)||(14003346-14003419)
chr6 (217-287)||(14002327-14002397)
chr6 (402-479)||(13436809-13436886)
[»] chr1 (8 HSPs)
chr1 (614-784)||(159236-159406)
chr1 (615-775)||(36776972-36777132)
chr1 (654-769)||(9133365-9133480)
chr1 (692-781)||(15199684-15199773)
chr1 (690-760)||(15218792-15218862)
chr1 (851-908)||(9133220-9133277)
chr1 (614-659)||(9134795-9134840)
chr1 (851-915)||(36776840-36776904)
[»] chr2 (4 HSPs)
chr2 (614-783)||(18856834-18857003)
chr2 (615-781)||(22834252-22834406)
chr2 (615-779)||(29807214-29807378)
chr2 (410-486)||(5700159-5700235)
[»] chr7 (4 HSPs)
chr7 (615-785)||(6670808-6670978)
chr7 (637-782)||(7811231-7811376)
chr7 (375-460)||(29292165-29292251)
chr7 (851-915)||(6670662-6670726)
[»] chr4 (2 HSPs)
chr4 (614-785)||(21278791-21278962)
chr4 (851-915)||(21279064-21279128)
[»] chr5 (6 HSPs)
chr5 (615-785)||(25802581-25802751)
chr5 (614-785)||(21345565-21345737)
chr5 (402-479)||(42954804-42954881)
chr5 (863-914)||(21345413-21345464)
chr5 (851-915)||(25802833-25802897)
chr5 (690-785)||(37634896-37634991)
[»] chr3 (6 HSPs)
chr3 (615-785)||(51464953-51465123)
chr3 (702-786)||(3570327-3570411)
chr3 (615-700)||(3572095-3572180)
chr3 (858-915)||(3570190-3570248)
chr3 (863-915)||(51464807-51464859)
chr3 (645-781)||(14241807-14241946)
[»] scaffold0073 (2 HSPs)
scaffold0073 (615-785)||(40720-40890)
scaffold0073 (851-915)||(40574-40638)
[»] chr8 (1 HSPs)
chr8 (375-486)||(11364459-11364571)
[»] scaffold0741 (1 HSPs)
scaffold0741 (691-785)||(6203-6297)


Alignment Details
Target: chr6 (Bit Score: 257; Significance: 1e-142; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 257; E-Value: 1e-142
Query Start/End: Original strand, 76 - 406
Target Start/End: Complemental strand, 14003853 - 14003527
Alignment:
Q  76 tgtaccttcacctaaaattatttattgccttcacctaaaaataagtttgagaatactagtacacacaaatttcatgaataatctttcaaaatcattaatt 175  Q
    |||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||| || || |||| ||||||||||||||||||||    
T  14003853 tgtaccttcacctaaaaaaatttattgccttcacctaaaaataagtttgagaatactagtacacacaagttgcaagaatgatctttcaaaatcattaatt 14003754  T
Q  176 tctgattaatattttgtacatgtattggttataagtcatcaattatttattacttgacgtgtagatttctctgaagaccggagagttttcaagtctttgt 275  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||        
T  14003753 tctgattaatattttgtacatgtagtggttataagtcatcaattatttattacttgacgtgttgatttctctgaagaccggagagttttcaagtct---a 14003657  T
Q  276 tttgttgtagtatttgaatttcctaactgtctttgttttcatccttacatcattttgaaaaaatttcacaacagtttgtgtcaaaacaatgcaagattct 375  Q
    ||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||| |||||||||||||||||    
T  14003656 tttgttgtagtatttgaattttctaactgtctttgttttcatcctgacatcattttg-aaaaatttcacaacagtttgtgtcgaaacaatgcaagattct 14003558  T
Q  376 gtaatggtccctaaaattgcagtgtgataaa 406  Q
    ||||||||||||||||||| |||||||||||    
T  14003557 gtaatggtccctaaaattgaagtgtgataaa 14003527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 127; E-Value: 4e-65
Query Start/End: Original strand, 615 - 785
Target Start/End: Complemental strand, 23667566 - 23667396
Alignment:
Q  615 catattttatccccagtcaaggaaaaaacattagatgtcagtagtattgtggcgccagatggtgctcctgtacacccggtgctgcaaaaagacttggatt 714  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||| |||||||| |||| ||||| || ||||    
T  23667566 catattttatcccaagtcaaggaaaaaacattagatgtcagtagtattatggcgccggatggtgctcctgtagacccggtgttgcagaaagaattagatt 23667467  T
Q  715 ttatggaaacatggctagcaaaggctgctgtgaatgaggtgccatttaaagaggtagtttcaaagtctcag 785  Q
    ||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  23667466 ttatgcaaacttggctagcaaaggctgctgtgaatgaggtgccatttaaagaggtagtttccaagtctcag 23667396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 105; E-Value: 6e-52
Query Start/End: Original strand, 81 - 242
Target Start/End: Original strand, 13871080 - 13871243
Alignment:
Q  81 cttcacctaaaattatttattgccttcacctaaaaataagtt--tgagaatactagtacacacaaatttcatgaataatctttcaaaatcattaatttct 178  Q
    ||||||||||||||||| ||||||||||||| | ||||||||  || |||||||| ||||||||| ||||||||||||||||||||||| ||||||||||    
T  13871080 cttcacctaaaattattaattgccttcacctgagaataagttaatgtgaatactactacacacaagtttcatgaataatctttcaaaattattaatttct 13871179  T
Q  179 gattaatattttgtacatgtattggttataagtcatcaattatttattacttgacgtgtagatt 242  Q
    ||||||| |||| |||||||| ||||||||||||||| ||||||||||||||||||||| ||||    
T  13871180 gattaatcttttctacatgtagtggttataagtcatcgattatttattacttgacgtgttgatt 13871243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 626 - 756
Target Start/End: Original strand, 21272962 - 21273092
Alignment:
Q  626 cccagtcaaggaaaaaacattagatgtcagtagtattgtggcgccagatggtgctcctgtacacccggtgctgcaaaaagacttggattttatggaaaca 725  Q
    |||||||||||| ||| ||||||| |||||||||||| ||| | ||||||||||||||||| |||||||| || | |||||||| |||||| || ||||     
T  21272962 cccagtcaaggataaagcattagaggtcagtagtattatggtgtcagatggtgctcctgtagacccggtgttgaagaaagacttagattttttgcaaact 21273061  T
Q  726 tggctagcaaaggctgctgtgaatgaggtgc 756  Q
    ||||||||||||||||||| |||||||||||    
T  21273062 tggctagcaaaggctgctgagaatgaggtgc 21273092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 400 - 473
Target Start/End: Complemental strand, 14003419 - 14003346
Alignment:
Q  400 tgataaattgataatggtgaattgattatcatgtgaaaggtaaagttgatagactagaacttaattaaaattga 473  Q
    |||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||    
T  14003419 tgataaattgataatgatgaattgattatcatgtgaaaggtaaaattgatagactagaacttcattaaaattga 14003346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 217 - 287
Target Start/End: Complemental strand, 14002397 - 14002327
Alignment:
Q  217 attatttattacttgacgtgtagatttctctgaagaccggagagttttcaagtctttgttttgttgtagta 287  Q
    ||||||||||| |||||||||  ||| |||||||||||||||| |||||||||||||||||||||||||||    
T  14002397 attatttattatttgacgtgttaattgctctgaagaccggagaattttcaagtctttgttttgttgtagta 14002327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 402 - 479
Target Start/End: Complemental strand, 13436886 - 13436809
Alignment:
Q  402 ataaattgataatggtgaattgattatcatgtgaaaggtaaagttgatagactagaacttaattaaaattgatgttct 479  Q
    ||||| ||||||| ||||||||||| | |  ||||||||||| |||||||| | ||||| ||||||||||||||||||    
T  13436886 ataaaatgataattgtgaattgattgtgaaatgaaaggtaaaattgatagattggaactcaattaaaattgatgttct 13436809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 131; Significance: 2e-67; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 131; E-Value: 2e-67
Query Start/End: Original strand, 614 - 784
Target Start/End: Complemental strand, 159406 - 159236
Alignment:
Q  614 gcatattttatccccagtcaaggaaaaaacattagatgtcagtagtattgtggcgccagatggtgctcctgtacacccggtgctgcaaaaagacttggat 713  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||| ||||||||||||| |||||||| |||    
T  159406 gcatattttatccccagtcaaggaaaaaactttagatgtcagtagtattgtggcgccaaatggtgctcctgtagacccggtgctgcagaaagacttagat 159307  T
Q  714 tttatggaaacatggctagcaaaggctgctgtgaatgaggtgccatttaaagaggtagtttcaaagtctca 784  Q
    |||||| |||| ||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||    
T  159306 tttatgcaaacttggctagcaaaggccattgtgaatgaggtgccatttaaagaggtagtttcaaagtctca 159236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 113; E-Value: 1e-56
Query Start/End: Original strand, 615 - 775
Target Start/End: Complemental strand, 36777132 - 36776972
Alignment:
Q  615 catattttatccccagtcaaggaaaaaacattagatgtcagtagtattgtggcgccagatggtgctcctgtacacccggtgctgcaaaaagacttggatt 714  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||| ||||| | ||||||||| || || |||||||| |||| |||||||| ||||    
T  36777132 catattttatccccaatcaaggaaaaaacattagatgtcagtagtattatggcgtcggatggtgctactatagacccggtgttgcacaaagacttagatt 36777033  T
Q  715 ttatggaaacatggctagcaaaggctgctgtgaatgaggtgccatttaaagaggtagtttc 775  Q
    ||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36777032 ttatgaaaacttggctagcaaaggctgctgtgaatgaggtgccatttaaagaggtagtttc 36776972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 654 - 769
Target Start/End: Complemental strand, 9133480 - 9133365
Alignment:
Q  654 agtagtattgtggcgccagatggtgctcctgtacacccggtgctgcaaaaagacttggattttatggaaacatggctagcaaaggctgctgtgaatgagg 753  Q
    |||||||||||||||||||||||||||| |||||||||||||||||  |||||||| ||||||||| |||| |||||||||||||||||| ||||||||     
T  9133480 agtagtattgtggcgccagatggtgctcatgtacacccggtgctgcggaaagacttagattttatgcaaacttggctagcaaaggctgctatgaatgagt 9133381  T
Q  754 tgccatttaaagaggt 769  Q
    ||||||||||||||||    
T  9133380 tgccatttaaagaggt 9133365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 692 - 781
Target Start/End: Complemental strand, 15199773 - 15199684
Alignment:
Q  692 ggtgctgcaaaaagacttggattttatggaaacatggctagcaaaggctgctgtgaatgaggtgccatttaaagaggtagtttcaaagtc 781  Q
    ||||||||| ||  |||||||||||||  |||| |||||||||||||||||||||||||||||| |||||||||||||| ||||||||||    
T  15199773 ggtgctgcagaagaacttggattttattcaaacttggctagcaaaggctgctgtgaatgaggtgacatttaaagaggtaatttcaaagtc 15199684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 690 - 760
Target Start/End: Complemental strand, 15218862 - 15218792
Alignment:
Q  690 ccggtgctgcaaaaagacttggattttatggaaacatggctagcaaaggctgctgtgaatgaggtgccatt 760  Q
    ||||||| ||| || ||||||||||||||| |||| |||||||||||||||| ||||||||||||||||||    
T  15218862 ccggtgcagcagaaggacttggattttatgcaaacttggctagcaaaggctgttgtgaatgaggtgccatt 15218792  T

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Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 851 - 908
Target Start/End: Complemental strand, 9133277 - 9133220
Alignment:
Q  851 tggaacattcgagggattggtaataacgattccaggcttgatactatgttgttcacta 908  Q
    |||||||| || |||||||||||||| |||| |||||||||||||| || ||||||||    
T  9133277 tggaacatccgggggattggtaataatgatttcaggcttgatactacgtggttcacta 9133220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 614 - 659
Target Start/End: Complemental strand, 9134840 - 9134795
Alignment:
Q  614 gcatattttatccccagtcaaggaaaaaacattagatgtcagtagt 659  Q
    |||||||||||||||| ||||||||||||| |||||| ||||||||    
T  9134840 gcatattttatccccaatcaaggaaaaaactttagatatcagtagt 9134795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 851 - 915
Target Start/End: Complemental strand, 36776904 - 36776840
Alignment:
Q  851 tggaacattcgagggattggtaataacgattccaggcttgatactatgttgttcactatgttgcc 915  Q
    ||||||||||| |||||||||||||| | ||||  ||||||||||| || |||||||| ||||||    
T  36776904 tggaacattcgggggattggtaataatggttcccagcttgatactacgtggttcactacgttgcc 36776840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 130; Significance: 7e-67; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 130; E-Value: 7e-67
Query Start/End: Original strand, 614 - 783
Target Start/End: Original strand, 18856834 - 18857003
Alignment:
Q  614 gcatattttatccccagtcaaggaaaaaacattagatgtcagtagtattgtggcgccagatggtgctcctgtacacccggtgctgcaaaaagacttggat 713  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||| |||    
T  18856834 gcatattttatccccagtcaaggaaaaaacattagatatcagtagtattgtggcgccagatggtgctcctgtagacccggtgctgcagaaagacttagat 18856933  T
Q  714 tttatggaaacatggctagcaaaggctgctgtgaatgaggtgccatttaaagaggtagtttcaaagtctc 783  Q
    |||||| ||||  |||||||||||| || ||| |||||||||||||||||||||||||||||||||||||    
T  18856934 tttatgcaaaccaggctagcaaaggttgttgttaatgaggtgccatttaaagaggtagtttcaaagtctc 18857003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 615 - 781
Target Start/End: Complemental strand, 22834406 - 22834252
Alignment:
Q  615 catattttatccccagtcaaggaaaaaacattagatgtcagtagtattgtggcgccagatggtgctcctgtacacccggtgctgcaaaaagacttggatt 714  Q
    ||||||||||| ||  |||| ||||||||||||||| ||||||||||||||||            ||| ||| | ||||||||||| || ||||| ||||    
T  22834406 catattttatctcccatcaaagaaaaaacattagatatcagtagtattgtggc------------tccggtagatccggtgctgcagaaggacttagatt 22834319  T
Q  715 ttatggaaacatggctagcaaaggctgctgtgaatgaggtgccatttaaagaggtagtttcaaagtc 781  Q
    ||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22834318 ttatgcaaacttggctagcaaaggctgctgtgaatgaggtgccatttaaagaggtagtttcaaagtc 22834252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 615 - 779
Target Start/End: Original strand, 29807214 - 29807378
Alignment:
Q  615 catattttatccccagtcaaggaaaaaacattagatgtcagtagtattgtggcgccagatggtgctcctgtacacccggtgctgcaaaaagacttggatt 714  Q
    ||||||||||| ||  |||| ||||||| ||||||||||||||||||||| || ||   |||||| |   || | |||||||| || || ||||| ||||    
T  29807214 catattttatctcccatcaaagaaaaaatattagatgtcagtagtattgttgctccgactggtgcacagatagatccggtgctacagaaggacttagatt 29807313  T
Q  715 ttatggaaacatggctagcaaaggctgctgtgaatgaggtgccatttaaagaggtagtttcaaag 779  Q
    ||||| || | ||| ||||||||| || ||||||||| ||||| |||| ||||||||||||||||    
T  29807314 ttatgcaatcttggttagcaaaggttgttgtgaatgaagtgccgtttacagaggtagtttcaaag 29807378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 410 - 486
Target Start/End: Complemental strand, 5700235 - 5700159
Alignment:
Q  410 ataatggtgaattgattatcatgtgaaaggtaaagttgatagactagaacttaattaaaattgatgttcttagtaca 486  Q
    ||||| ||||||||||| | |  ||||||||||| |||||||| ||||||| ||||||||||||||||||| |||||    
T  5700235 ataatcgtgaattgattgtgaaatgaaaggtaaaattgatagattagaactcaattaaaattgatgttcttggtaca 5700159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 127; Significance: 4e-65; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 127; E-Value: 4e-65
Query Start/End: Original strand, 615 - 785
Target Start/End: Complemental strand, 6670978 - 6670808
Alignment:
Q  615 catattttatccccagtcaaggaaaaaacattagatgtcagtagtattgtggcgccagatggtgctcctgtacacccggtgctgcaaaaagacttggatt 714  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||| ||||||| ||||||||||||||| |||| ||| |||| ||||| || ||||    
T  6670978 catattttatccccaatcaaggaaaaaacattagatgtcagtagtattatggcgccggatggtgctcctgtagacccagtgttgcagaaagagttagatt 6670879  T
Q  715 ttatggaaacatggctagcaaaggctgctgtgaatgaggtgccatttaaagaggtagtttcaaagtctcag 785  Q
    ||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6670878 ttatgcaaacttggctagcaaaggctgctgtgaatgaggtgccatttaaagaggtagtttcaaagtctcag 6670808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 637 - 782
Target Start/End: Complemental strand, 7811376 - 7811231
Alignment:
Q  637 aaaaaacattagatgtcagtagtattgtggcgccagatggtgctcctgtacacccggtgctgcaaaaagacttggattttatggaaacatggctagcaaa 736  Q
    |||||||||||||||||||||||||| | ||  | || | ||| | |||| | |||||||||||||||||||| ||||||||| |||| ||| ||||  |    
T  7811376 aaaaaacattagatgtcagtagtattatagcttcggaagatgcacatgtagatccggtgctgcaaaaagacttagattttatgcaaacttggttagcgga 7811277  T
Q  737 ggctgctgtgaatgaggtgccatttaaagaggtagtttcaaagtct 782  Q
    ||| ||||||| ||| |  ||||||| |||||||||||||||||||    
T  7811276 ggcagctgtgactgatgcaccatttacagaggtagtttcaaagtct 7811231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 375 - 460
Target Start/End: Original strand, 29292165 - 29292251
Alignment:
Q  375 tgtaatggtccctaaaattgca-gtgtgataaattgataatggtgaattgattatcatgtgaaaggtaaagttgatagactagaact 460  Q
    |||||||||  ||||||||| | |||||||||||||||||| ||||||||||||| | |||||||||||| |||||||| |||||||    
T  29292165 tgtaatggtttctaaaattgaaagtgtgataaattgataattgtgaattgattattaagtgaaaggtaaaattgatagattagaact 29292251  T

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Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 851 - 915
Target Start/End: Complemental strand, 6670726 - 6670662
Alignment:
Q  851 tggaacattcgagggattggtaataacgattccaggcttgatactatgttgttcactatgttgcc 915  Q
    ||||| || ||||||||||||||||| ||||||| ||||||||||| || | |||||||||||||    
T  6670726 tggaatatccgagggattggtaataatgattccatgcttgatactacgtggctcactatgttgcc 6670662  T

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Target: chr4 (Bit Score: 124; Significance: 3e-63; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 124; E-Value: 3e-63
Query Start/End: Original strand, 614 - 785
Target Start/End: Original strand, 21278791 - 21278962
Alignment:
Q  614 gcatattttatccccagtcaaggaaaaaacattagatgtcagtagtattgtggcgccagatggtgctcctgtacacccggtgctgcaaaaagacttggat 713  Q
    ||||||||||||||||||||||||||| || |||||||||| ||||||||||| | | ||||||||||||||| ||||||||||||| |||||||| |||    
T  21278791 gcatattttatccccagtcaaggaaaatactttagatgtcaatagtattgtggtgtcggatggtgctcctgtagacccggtgctgcagaaagacttagat 21278890  T
Q  714 tttatggaaacatggctagcaaaggctgctgtgaatgaggtgccatttaaagaggtagtttcaaagtctcag 785  Q
    |||||| |||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  21278891 tttatgcaaacttggctagcaaaggatgctgtgaatgaggtgccatttaaagaggtagtttcaaagtctcag 21278962  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 851 - 915
Target Start/End: Original strand, 21279064 - 21279128
Alignment:
Q  851 tggaacattcgagggattggtaataacgattccaggcttgatactatgttgttcactatgttgcc 915  Q
    |||||||| ||  ||||||||||||  |||| |||||||||||||| || |||||||||||||||    
T  21279064 tggaacatccggaggattggtaatattgatttcaggcttgatactacgtggttcactatgttgcc 21279128  T

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Target: chr5 (Bit Score: 119; Significance: 3e-60; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 119; E-Value: 3e-60
Query Start/End: Original strand, 615 - 785
Target Start/End: Original strand, 25802581 - 25802751
Alignment:
Q  615 catattttatccccagtcaaggaaaaaacattagatgtcagtagtattgtggcgccagatggtgctcctgtacacccggtgctgcaaaaagacttggatt 714  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||| |||||||  |||||||||||||| ||||  || |||| ||||| || ||||    
T  25802581 catattttatccccagtcaaggaaaaaacattggatgtcagtagtattatggcgccgaatggtgctcctgtagacccaatgttgcagaaagagttagatt 25802680  T
Q  715 ttatggaaacatggctagcaaaggctgctgtgaatgaggtgccatttaaagaggtagtttcaaagtctcag 785  Q
    ||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25802681 ttatgcaaacttggctagcaaaggctgctgtgaatgaggtgccatttaaagaggtagtttcaaagtctcag 25802751  T

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Target: chr5; HSP #2
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 614 - 785
Target Start/End: Complemental strand, 21345737 - 21345565
Alignment:
Q  614 gcatattttatccccagtcaaggaaaaaacattagatgtcagtagtattgtggcgccagatggtgctcctgtacacccggtgctgcaaaaagacttggat 713  Q
    ||||||||||||| |||||||||||||||| | ||||||||||||||||||||||||  ||||||||||| || |||||||| || | |||||| | |||    
T  21345737 gcatattttatcctcagtcaaggaaaaaacttcagatgtcagtagtattgtggcgccgaatggtgctcctatagacccggtgttgtagaaagacatagat 21345638  T
Q  714 tttatggaaacatggcta-gcaaaggctgctgtgaatgaggtgccatttaaagaggtagtttcaaagtctcag 785  Q
    |||||| |||| |||||| |||||||||||| |||||||||| ||||||||||||||||||||||||||||||    
T  21345637 tttatgcaaacttggctaggcaaaggctgctttgaatgaggtaccatttaaagaggtagtttcaaagtctcag 21345565  T

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Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 402 - 479
Target Start/End: Original strand, 42954804 - 42954881
Alignment:
Q  402 ataaattgataatggtgaattgattatcatgtgaaaggtaaagttgatagactagaacttaattaaaattgatgttct 479  Q
    ||||| ||||||| ||||||||||| | |  ||||||||||| |||||||| ||||||| ||||||||||||||||||    
T  42954804 ataaaatgataattgtgaattgattgtgaaatgaaaggtaaaattgatagattagaactcaattaaaattgatgttct 42954881  T

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Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 863 - 914
Target Start/End: Complemental strand, 21345464 - 21345413
Alignment:
Q  863 gggattggtaataacgattccaggcttgatactatgttgttcactatgttgc 914  Q
    |||||||||||||| ||||||||||||||||||| || ||||||||||||||    
T  21345464 gggattggtaataatgattccaggcttgatactacgtggttcactatgttgc 21345413  T

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Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 851 - 915
Target Start/End: Original strand, 25802833 - 25802897
Alignment:
Q  851 tggaacattcgagggattggtaataacgattccaggcttgatactatgttgttcactatgttgcc 915  Q
    ||||| || || |||||||||||||| ||||||  ||||||||||| || |||||||||||||||    
T  25802833 tggaagatccgggggattggtaataatgattccctgcttgatactacgtggttcactatgttgcc 25802897  T

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Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 690 - 785
Target Start/End: Complemental strand, 37634991 - 37634896
Alignment:
Q  690 ccggtgctgcaaaaagacttggattttatggaaacatggctagcaaaggctgctgtgaatgaggtgccatttaaagaggtagtttcaaagtctcag 785  Q
    |||||||| ||||||||||||||||||||| | || |||||| ||||||| || |  |  ||||| ||||||| | |||| ||||| |||||||||    
T  37634991 ccggtgctacaaaaagacttggattttatgcacacttggctatcaaaggcagcagctaccgaggtaccatttacacaggttgtttccaagtctcag 37634896  T

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Target: chr3 (Bit Score: 115; Significance: 6e-58; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 115; E-Value: 6e-58
Query Start/End: Original strand, 615 - 785
Target Start/End: Complemental strand, 51465123 - 51464953
Alignment:
Q  615 catattttatccccagtcaaggaaaaaacattagatgtcagtagtattgtggcgccagatggtgctcctgtacacccggtgctgcaaaaagacttggatt 714  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||| ||||||| ||||||||||||||| |||| ||| || | ||||| || ||||    
T  51465123 catattttatccccagtcaaggaaaaaacattaaatgtcagtagtattatggcgccggatggtgctcctgtagacccagtgttgtagaaagagttagatt 51465024  T
Q  715 ttatggaaacatggctagcaaaggctgctgtgaatgaggtgccatttaaagaggtagtttcaaagtctcag 785  Q
    ||||| |||| ||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||    
T  51465023 ttatgcaaacttggctagcaaaggttgctgtgaatgaggtgtcatttaaagaggtagtttcaaagtctcag 51464953  T

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Target: chr3; HSP #2
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 702 - 786
Target Start/End: Complemental strand, 3570411 - 3570327
Alignment:
Q  702 aaagacttggattttatggaaacatggctagcaaaggctgctgtgaatgaggtgccatttaaagaggtagtttcaaagtctcagg 786  Q
    |||||||| | ||||||| |||  |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  3570411 aaagacttagcttttatgcaaatttggctagcaaaggctgctgtcaatgaggtgccatttaaagaggtagtttcaaagtctcagg 3570327  T

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Target: chr3; HSP #3
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 615 - 700
Target Start/End: Complemental strand, 3572180 - 3572095
Alignment:
Q  615 catattttatccccagtcaaggaaaaaacattagatgtcagtagtattgtggcgccagatggtgctcctgtacacccggtgctgca 700  Q
    ||||||||||||||| | |||||||||||||||||||||||||||||| ||||||| |||||| |||||||| |||||||| ||||    
T  3572180 catattttatccccaataaaggaaaaaacattagatgtcagtagtattatggcgccggatggtactcctgtagacccggtgttgca 3572095  T

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Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 858 - 915
Target Start/End: Complemental strand, 3570248 - 3570190
Alignment:
Q  858 ttcgagggattggtaataacgattcca-ggcttgatactatgttgttcactatgttgcc 915  Q
    |||| |||||||||||||| ||||||  ||||||||||||||| |||||||||||||||    
T  3570248 ttcgggggattggtaataatgattccctggcttgatactatgtggttcactatgttgcc 3570190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 863 - 915
Target Start/End: Complemental strand, 51464859 - 51464807
Alignment:
Q  863 gggattggtaataacgattccaggcttgatactatgttgttcactatgttgcc 915  Q
    |||||||||||||| ||||||  ||||||||||| || |||||||||||||||    
T  51464859 gggattggtaataatgattccctgcttgatactacgtggttcactatgttgcc 51464807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 645 - 781
Target Start/End: Complemental strand, 14241946 - 14241807
Alignment:
Q  645 ttagatgtcagtagtattgtggcgccagatggtgctcctgtacacccggtgctgcaaaaagacttggattttatggaaacatggctagcaaaggctgctg 744  Q
    |||||||||||||| |||||||| || || ||||||||  |||| |||||||| || || |||||  |||||||| ||   ||| |||| ||||||||||    
T  14241946 ttagatgtcagtagcattgtggctccggagggtgctccaatacatccggtgctacagaaggacttaaattttatgcaagattggttagcgaaggctgctg 14241847  T
Q  745 tgaat---gaggtgccatttaaagaggtagtttcaaagtc 781  Q
    | |||   ||||| || ||||  |||||| ||||||||||    
T  14241846 ttaataacgaggtaccttttattgaggtaatttcaaagtc 14241807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0073 (Bit Score: 107; Significance: 4e-53; HSPs: 2)
Name: scaffold0073
Description:

Target: scaffold0073; HSP #1
Raw Score: 107; E-Value: 4e-53
Query Start/End: Original strand, 615 - 785
Target Start/End: Complemental strand, 40890 - 40720
Alignment:
Q  615 catattttatccccagtcaaggaaaaaacattagatgtcagtagtattgtggcgccagatggtgctcctgtacacccggtgctgcaaaaagacttggatt 714  Q
    ||||||||||||||||| |||||||||| ||||||||||||||||||| ||||||| ||| ||||||| ||| |||| ||| |||| ||||| || ||||    
T  40890 catattttatccccagttaaggaaaaaatattagatgtcagtagtattatggcgccggatagtgctccggtagacccagtgttgcagaaagagttagatt 40791  T
Q  715 ttatggaaacatggctagcaaaggctgctgtgaatgaggtgccatttaaagaggtagtttcaaagtctcag 785  Q
    ||||| |||| ||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||    
T  40790 ttatgcaaacttggctagcaaaggctgctgtgaatgaggtaccatttaaagaagtagtttcaaagtctcag 40720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0073; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 851 - 915
Target Start/End: Complemental strand, 40638 - 40574
Alignment:
Q  851 tggaacattcgagggattggtaataacgattccaggcttgatactatgttgttcactatgttgcc 915  Q
    ||||| ||||| |||||||||||||| ||||||  ||||||||||| || |||||||||||||||    
T  40638 tggaagattcgggggattggtaataatgattccctgcttgatactacgtggttcactatgttgcc 40574  T

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Target: chr8 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 375 - 486
Target Start/End: Original strand, 11364459 - 11364571
Alignment:
Q  375 tgtaatggtccctaaaattgc-agtgtgataaattgataatggtgaattgattatcatgtgaaaggtaaagttgatagactagaacttaattaaaattga 473  Q
    ||||||||| ||||||||||  | ||||||||||||||||| || ||||| |||| |  | ||||||||| ||||  || ||||||  |||||||||||     
T  11364459 tgtaatggttcctaaaattgagaatgtgataaattgataattgtaaattgtttattaaatcaaaggtaaaattgagggattagaacccaattaaaattgg 11364558  T
Q  474 tgttcttagtaca 486  Q
    |||||||||||||    
T  11364559 tgttcttagtaca 11364571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0741 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: scaffold0741
Description:

Target: scaffold0741; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 691 - 785
Target Start/End: Original strand, 6203 - 6297
Alignment:
Q  691 cggtgctgcaaaaagacttggattttatggaaacatggctagcaaaggctgctgtgaatgaggtgccatttaaagaggtagtttcaaagtctcag 785  Q
    ||||||| ||||||||||||||||||||| | || |||||| ||||||| || |  |  ||||| ||||||| | |||| ||||| |||||||||    
T  6203 cggtgctacaaaaagacttggattttatgcacacttggctatcaaaggcagcagctaccgaggtaccatttacacaggttgtttccaagtctcag 6297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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