View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2931-Insertion-4 (Length: 724)
Name: NF2931-Insertion-4
Description: NF2931
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2931-Insertion-4 |
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Alignment Details
Target: chr5 (Bit Score: 326; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 7 - 373
Target Start/End: Complemental strand, 36282884 - 36282518
Alignment:
| Q |
7 |
aagtatgatatgaagttaaaaagaagatgataaccatttggtaaagttaactgtttgagatagtgggcggtggcggtttggcggtgctatagactagcta |
106 |
Q |
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| T |
36282884 |
aagtatgatatgaagttaaaaagaagatgataaccatttggtaaagttaattgtttgagatagtgggcggtggcggtttggcggtgctatagactagcta |
36282785 |
T |
|
| Q |
107 |
tatgtaaaatgtaaagtaggagagnnnnnnnagttagttaggaaatgaagaggcatgtacacaaagaggaagaggattacaattctctcatgaaaatttt |
206 |
Q |
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| T |
36282784 |
tatgtaaaatgtaaagtaggagagtttttttaattagttaggaaatgaagaggcatgtacacaaagaggaagaggattacaattctctcatgaaaatttt |
36282685 |
T |
|
| Q |
207 |
gtcgacttttctccattttcaatctacatggttaaaatgctcctacgacttttcttagtaattcaactttagttttctctcatatgtttgaaggttgaga |
306 |
Q |
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| T |
36282684 |
gtcgacttttctccattttcaatctacatggttaaaatgctcctactacttttcttagtaatttaactttagttttctctcatatgtttgaaggttgaga |
36282585 |
T |
|
| Q |
307 |
tttcatttaagaaaaattgagagaacccaaattcttacaaagagatagattttttagaggatgaagg |
373 |
Q |
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| T |
36282584 |
tttcatttaagaaaaattgagagaatccaaattcttacaaagagatagattttttagaggatgaagg |
36282518 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 440 - 721
Target Start/End: Complemental strand, 36282458 - 36282177
Alignment:
| Q |
440 |
gaacgcggacaaagtttattctcaacaaatgatttagactgcaaactaaaactcttttttaaattaagaagaatctagaacctgagttcaattttcaaat |
539 |
Q |
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| T |
36282458 |
gaacgcgggcaaagtttatcctcaacaattgatttagattgcaaactagaactcttctttaaactaagaagaatctggaacttgagttcaattttcaaat |
36282359 |
T |
|
| Q |
540 |
ataataatcgtattaggataggagggagtaaagcgtcaatgtggtggaaggatttgtgtgattggtgcaggggagtcgggtggtgaggaaagttggttta |
639 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||| ||||||||| || |||||||| |
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| T |
36282358 |
ataataatcgtattaggagaggagggagtaaagcgtcaatgtggtggaaggatttgtgtgcttggtgaaggggagtcaagtggtgagggaaattggttta |
36282259 |
T |
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| Q |
640 |
aagaagggattagttgcaatttggatgacgaagagactactttattctagaatgatccttgattggagggagggtgtttatg |
721 |
Q |
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| T |
36282258 |
aagaagggattagttgcaatttggatgacgaagaaactactttattctagaatgatccttgattggagggagggtgtttatg |
36282177 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 279 - 331
Target Start/End: Complemental strand, 45235079 - 45235027
Alignment:
| Q |
279 |
ttttctctcatatgtttgaaggttgagatttcatttaagaaaaattgagagaa |
331 |
Q |
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||||||||| ||||||||| ||||||||||||| || |||||| ||||||||| |
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| T |
45235079 |
ttttctctcttatgtttgatggttgagatttcacttgagaaaacttgagagaa |
45235027 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 290 - 331
Target Start/End: Original strand, 12906624 - 12906665
Alignment:
| Q |
290 |
atgtttgaaggttgagatttcatttaagaaaaattgagagaa |
331 |
Q |
| |
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|||||||| |||||||||| |||||||||||| ||||||||| |
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| T |
12906624 |
atgtttgatggttgagattacatttaagaaaacttgagagaa |
12906665 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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