View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2931-Insertion-5 (Length: 623)
Name: NF2931-Insertion-5
Description: NF2931
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2931-Insertion-5 |
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Alignment Details
Target: chr5 (Bit Score: 196; Significance: 1e-106; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 8 - 299
Target Start/End: Complemental strand, 36027136 - 36026838
Alignment:
| Q |
8 |
cgcatgattcccaaaccataggaatctgaatc---tacaatctagatatgtaaagtggcaaaagagtaattgagtcattgccttacattttgtaaactga |
104 |
Q |
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| T |
36027136 |
cgcatgattcccaaaccataggaatatgaatcaactacaatctagatatgtaaagtggcaaaagagtaattgagtcattgccttatattttgtaaactga |
36027037 |
T |
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| Q |
105 |
ataatgcagaaattggttgtactggacctacactttttatttaga----agaactagccgttggaactttggggttcggacgtgcaataaaaggaagtgt |
200 |
Q |
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| T |
36027036 |
ataatgcagaaattggttgtactggacctacactttttatttagaagaaagaactagccgttggaactttggggttcggacatgcaataaaaggaagtgt |
36026937 |
T |
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| Q |
201 |
ctttctttcattatgtaactaataaccaacnnnnnnnnnnnnnnnnaaacaaataataaccaactttctaatctcagcaacattgaagataatcaaata |
299 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||| |||| |||||| |
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| T |
36026936 |
ctttctttcattatgtaactaataaccaaccttctttttttttttgaaacaaataataaccaaccttctaatctcagcaacattgaacataaccaaata |
36026838 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 462 - 623
Target Start/End: Complemental strand, 36026651 - 36026490
Alignment:
| Q |
462 |
acatttttaaaaccaacttgaacaagagagacagttggtacaacaagatctaaaactgtgtattaaatataacacacctcaaaataaaactagccgtttg |
561 |
Q |
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| T |
36026651 |
acatttttaaaaccaacttgaacaagagagacacttggtacaacaagatctaaaactgtgtattaaatataacacagctcaaaataaaactagccgtttg |
36026552 |
T |
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| Q |
562 |
tatttgtaagaagaagctttctttgtattctgtaccaatccacctgacaaatagttttcagt |
623 |
Q |
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| T |
36026551 |
tatttgtaagaagaagctttctttgtattctgtaccaatccacctgacaaatagttttcagt |
36026490 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 347 - 419
Target Start/End: Complemental strand, 36026718 - 36026646
Alignment:
| Q |
347 |
ttaaataagtttaaatcttatccaaaaaattagcttaaacaacaaagatattcaaacatatatttatatattt |
419 |
Q |
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|||||||||||| ||||||| | |||| | |||||||| ||| |||||| ||||||||||||||||| |||| |
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| T |
36026718 |
ttaaataagtttggatcttattccaaaagtaagcttaaagaacgaagatactcaaacatatatttatacattt |
36026646 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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