View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2931-Insertion-6 (Length: 620)
Name: NF2931-Insertion-6
Description: NF2931
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2931-Insertion-6 |
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Alignment Details
Target: chr5 (Bit Score: 546; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 546; E-Value: 0
Query Start/End: Original strand, 8 - 594
Target Start/End: Original strand, 43054784 - 43055370
Alignment:
| Q |
8 |
tattattatgtttctccaacaaaatatttagtgacaattctttacgttacggatccagaatatgatagttgctaggtcaaatacagttgttattattatt |
107 |
Q |
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| T |
43054784 |
tattattatgtttctccaacaaaatatttagtgacaattctttacgttatggatccagaatatgatagttgctaggtcaaatacagttgttattattatt |
43054883 |
T |
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| Q |
108 |
attgctgttattatttctggcgtccagacgggcacaattggctagggatgcatatgtttagtccctagaaaattacccagtttcagttatgtttatgact |
207 |
Q |
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| T |
43054884 |
attactgttattatttctggcgtccagacgggcacaattggctagggatgcatatgtttagtccctagaaaattacccagtttcggttatgtttatgact |
43054983 |
T |
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| Q |
208 |
tctgtataaatgtatactgctgatcatgttcaatgtttatgttttctgttgcaggaaaaagttgtttgtctcacttgcggcgatataggttttccagagg |
307 |
Q |
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| T |
43054984 |
tctgtataaatgtatactgctgatcatgttcaatgtttatgttttctgttgcaggaaaaagttgtttgtctcacttgcggcgatataggttttccagagg |
43055083 |
T |
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| Q |
308 |
tccgggttttttgcaacaattgcaaggattgtgctcttcataggtgcttatacnnnnnnngaagttatattattatactagagtactgagagtatatatt |
407 |
Q |
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| T |
43055084 |
tcagggttttttgcaacaattgcaaggattgtgctcttcataggtgcttatactttttttgaagttatattattatactagagtactgagagtatatatt |
43055183 |
T |
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| Q |
408 |
ctttagtttggacaatccaaagagtaattgaaatgatactacttgttgatatgttttctttatacgaaatatatgtccttttcgattttagtagaagttc |
507 |
Q |
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| T |
43055184 |
ctttagtttggacaatccaaagagtaattgaaatgatactacttgttgatatgttttctttatacgaaatatatgtccttttcgattttagtagaagttc |
43055283 |
T |
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| Q |
508 |
ttttagaacaatgataggctttgtgcatcgctcttgacgcgtttctctatattcccatatggatgtttacaaaatttctataggtga |
594 |
Q |
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| T |
43055284 |
ttttagaacaatgataggctttgtgcatcgctcttgacgcgtttctttatattcccatatggatgtttacaaaatttctataggtga |
43055370 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 526 - 620
Target Start/End: Original strand, 14524979 - 14525072
Alignment:
| Q |
526 |
ctttgtgcatcgctcttgacgcgtttctctatattcccatatggatgtttacaaaatttctataggtgaggtttgggagtgctgctatccattga |
620 |
Q |
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| T |
14524979 |
ctttgagcattgctctagatgcatttctttatattcccatatggatgtttacaaaatttcta-aggtgagatttaggagtgttgttatccattga |
14525072 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 287 - 352
Target Start/End: Complemental strand, 43186084 - 43186018
Alignment:
| Q |
287 |
gcgatataggttttccagaggtccg-ggttttttgcaacaattgcaaggattgtgctcttcataggt |
352 |
Q |
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| T |
43186084 |
gcgatgtaggttttccagaggttagaggttttttgcaacaagtgccaggcttgtgctcttcacaggt |
43186018 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 402 - 459
Target Start/End: Original strand, 14524909 - 14524966
Alignment:
| Q |
402 |
tatattctttagtttggacaatccaaagagtaattgaaatgatactacttgttgatat |
459 |
Q |
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| T |
14524909 |
tatattcttaagtttggacaatctaaagagcaaccagaatgatactacttgttgatat |
14524966 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 386 - 452
Target Start/End: Original strand, 44804643 - 44804708
Alignment:
| Q |
386 |
tagagtactgagagtatatattctttagtttggacaatccaaagagtaattgaaatgatactacttg |
452 |
Q |
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| T |
44804643 |
tagagtactgagagtgtatagtctt-aggttgaacgatccaaagagtaattggaatgatactacttg |
44804708 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 270 - 307
Target Start/End: Original strand, 44804432 - 44804469
Alignment:
| Q |
270 |
tgtttgtctcacttgcggcgatataggttttccagagg |
307 |
Q |
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| T |
44804432 |
tgtttgtctcacttgcggtgatgtaggttttccagagg |
44804469 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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