View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2931-Insertion-9 (Length: 545)

Name: NF2931-Insertion-9
Description: NF2931
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2931-Insertion-9
NF2931-Insertion-9
[»] chr6 (9 HSPs)
chr6 (8-221)||(2818389-2818605)
chr6 (354-545)||(2817166-2817357)
chr6 (357-471)||(2801277-2801392)
chr6 (354-483)||(31597514-31597643)
chr6 (357-508)||(342910-343064)
chr6 (272-324)||(2818293-2818345)
chr6 (354-500)||(30326647-30326792)
chr6 (449-510)||(24396859-24396920)
chr6 (355-438)||(2248747-2248830)
[»] chr1 (8 HSPs)
chr1 (351-510)||(49805957-49806116)
chr1 (354-478)||(27262735-27262859)
chr1 (409-502)||(26761214-26761308)
chr1 (408-512)||(44697992-44698096)
chr1 (351-399)||(52698507-52698554)
chr1 (355-463)||(50015549-50015657)
chr1 (351-501)||(7444887-7445036)
chr1 (408-484)||(11451852-11451928)
[»] chr3 (6 HSPs)
chr3 (409-512)||(43767251-43767354)
chr3 (351-512)||(24487696-24487857)
chr3 (358-502)||(54457446-54457590)
chr3 (352-512)||(31732064-31732224)
chr3 (361-477)||(53248603-53248719)
chr3 (351-399)||(38094344-38094392)
[»] chr8 (11 HSPs)
chr8 (408-508)||(10409685-10409785)
chr8 (412-471)||(24585828-24585887)
chr8 (371-511)||(32615798-32615938)
chr8 (354-512)||(13521699-13521856)
chr8 (354-511)||(13611234-13611390)
chr8 (357-478)||(39900259-39900378)
chr8 (412-508)||(29912106-29912200)
chr8 (411-508)||(41570007-41570104)
chr8 (413-478)||(28626689-28626754)
chr8 (371-512)||(42964747-42964887)
chr8 (408-512)||(7859166-7859270)
[»] chr4 (6 HSPs)
chr4 (359-470)||(5497749-5497860)
chr4 (408-512)||(23568038-23568142)
chr4 (421-470)||(37177164-37177213)
chr4 (353-462)||(51834745-51834854)
chr4 (432-508)||(26009749-26009825)
chr4 (365-438)||(37626976-37627049)
[»] chr2 (9 HSPs)
chr2 (351-502)||(11074492-11074642)
chr2 (409-508)||(37743982-37744083)
chr2 (409-477)||(8701041-8701109)
chr2 (351-427)||(38788769-38788845)
chr2 (351-495)||(40141938-40142081)
chr2 (351-397)||(7669930-7669976)
chr2 (413-502)||(16011848-16011937)
chr2 (423-503)||(8741037-8741117)
chr2 (409-470)||(34335021-34335081)
[»] chr5 (5 HSPs)
chr5 (408-509)||(40323822-40323923)
chr5 (354-485)||(9784383-9784509)
chr5 (354-400)||(41360880-41360926)
chr5 (408-510)||(1863067-1863169)
chr5 (413-469)||(6562633-6562689)
[»] chr7 (4 HSPs)
chr7 (408-502)||(6707638-6707732)
chr7 (357-475)||(47188417-47188534)
chr7 (351-381)||(28517832-28517862)
chr7 (351-461)||(24423446-24423555)
[»] scaffold0074 (1 HSPs)
scaffold0074 (419-510)||(29749-29840)


Alignment Details
Target: chr6 (Bit Score: 187; Significance: 1e-101; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 8 - 221
Target Start/End: Complemental strand, 2818605 - 2818389
Alignment:
Q  8 acttcaagattcagcgagaataatctttacggaaaaggaaaaataatgaagatc---agctttaagcattatgtcttcacttgaaggagagcaataaaca 104  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||    ||||||||||||||||||||||||||||||||||||||||| |    
T  2818605 acttcaagattcaacgagaataatctttacggaaaaggaaaaataatgaagatgttgagctttaagcattatgtcttcacttgaaggagagcaataaata 2818506  T
Q  105 atagagttatagagaggtttacacgtgcacactaagtgagaacgatgaaaacgtttgagtggttaatgttattgttgatatcattaggtttttataaggt 204  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2818505 atagagttatagagaggtttacacgtgcacactaagggagaacgatgaaaacgtttgagtggttaatgttattgttgatatcattaggtttttataaggt 2818406  T
Q  205 ggaggcatcacttcctt 221  Q
    |||||||||||||||||    
T  2818405 ggaggcatcacttcctt 2818389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 354 - 545
Target Start/End: Complemental strand, 2817357 - 2817166
Alignment:
Q  354 cacttgttaaggattcaaaaaatggaaacagttgataacttttatgtnnnnnnn-gttactttttgatgttttaacgtgttgaataaataaatttcaaga 452  Q
    ||||||||||||||| ||||||| |||||||||||||||||||||||        ||||||||||||||||||||||||||||||||| ||||| || ||    
T  2817357 cacttgttaaggatttaaaaaatagaaacagttgataacttttatgtaaaaaatagttactttttgatgttttaacgtgttgaataaacaaattccagga 2817258  T
Q  453 taaaatttttattttaaacctcttataaagtgctctaagggcacttgttaatatttccctnnnnnnnnttgaaatacaccccaacgcattcaa 545  Q
     ||||||| ||||||||||||||||| ||||||| |||||| | ||||||  ||||||||         ||||||||||||||||||||||||    
T  2817257 aaaaatttctattttaaacctcttatcaagtgctataagggtatttgttagcatttccctaaaaaaaa-tgaaatacaccccaacgcattcaa 2817166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 357 - 471
Target Start/End: Complemental strand, 2801392 - 2801277
Alignment:
Q  357 ttgttaaggattcaaaaaatggaaacagttgataacttttatgtnnnnnnn-gttactttttgatgttttaacgtgttgaataaataaatttcaagataa 455  Q
    ||||||| |||||||||||| |||||| ||||||||||||||||        |||||||||| ||||||||| |||||||||| ||||||||||||| ||    
T  2801392 ttgttaatgattcaaaaaatagaaacaattgataacttttatgtagaaaaaagttactttttaatgttttaatgtgttgaatacataaatttcaagacaa 2801293  T
Q  456 aatttttattttaaac 471  Q
    | |||| |||||||||    
T  2801292 agttttcattttaaac 2801277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 354 - 483
Target Start/End: Original strand, 31597514 - 31597643
Alignment:
Q  354 cacttgttaaggattcaaaaaatggaaacagttgataacttttatgtnnnnnnngttactttttgatgttttaacgtgttgaataaataaatttcaagat 453  Q
    ||||||||||||||| |||||||  ||||| || |||||||||||||       |||||||||| ||||||||| |||||||||  | |||||||||||     
T  31597514 cacttgttaaggatttaaaaaataaaaacaatttataacttttatgtagaaaaagttactttttaatgttttaatgtgttgaatgcacaaatttcaagac 31597613  T
Q  454 aaaatttttattttaaacctcttataaagt 483  Q
    |||||||  |||||||| ||||||| ||||    
T  31597614 aaaatttccattttaaaactcttatcaagt 31597643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 357 - 508
Target Start/End: Complemental strand, 343064 - 342910
Alignment:
Q  357 ttgttaaggattcaaaaaatggaaacagttgataacttttatgtnnnnnnngttactttttgatgttttaacgtgttgaataaataaatttcaagataaa 456  Q
    ||||||| |||||||||||| |||||| |||||||||||||||        |||| ||||| |||||| || |||||||||| ||||||| ||| | |||    
T  343064 ttgttaaagattcaaaaaatagaaacaattgataacttttatgcataaaaagttattttttaatgtttcaatgtgttgaatacataaattccaaaacaaa 342965  T
Q  457 atttttattttaaacctcttataaagtgc---tctaagggcacttgttaatattt 508  Q
    ||||| ||||||||| | |||| |||| |   |||||||||||||||||| ||||    
T  342964 attttcattttaaactttttatcaagtacccttctaagggcacttgttaacattt 342910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 272 - 324
Target Start/End: Complemental strand, 2818345 - 2818293
Alignment:
Q  272 ggtgaggsatcacttttaataaactctaacataatcaagtgttatctgtaatt 324  Q
    ||||||| ||||||||||||||||| ||||||||||||||||||| |||||||    
T  2818345 ggtgaggcatcacttttaataaactttaacataatcaagtgttatatgtaatt 2818293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 354 - 500
Target Start/End: Complemental strand, 30326792 - 30326647
Alignment:
Q  354 cacttgttaaggattcaaaaaatggaaacagttgataacttttatgtnnnnnnngttactttttgatgttttaacgtgttgaataaataaatttcaagat 453  Q
    ||||||||||||||| ||||| ||| |||| ||||||||||| ||||       |||  | |||||||||| || |||||||||| | ||||  ||||||    
T  30326792 cacttgttaaggatttaaaaa-tgggaacaattgataactttcatgtagaaaaagttgttctttgatgtttcaatgtgttgaatacacaaatcccaagat 30326694  T
Q  454 aaaatttttattttaaacctcttataaagtgctctaagggcacttgt 500  Q
    |||||||  ||||||||| |||||| || |||  |||||||||||||    
T  30326693 aaaatttccattttaaacttcttatcaaatgccttaagggcacttgt 30326647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 449 - 510
Target Start/End: Original strand, 24396859 - 24396920
Alignment:
Q  449 aagataaaatttttattttaaacctcttataaagtgctctaagggcacttgttaatatttcc 510  Q
    |||||||||||| |||||| ||| | |||| |||||| ||||||||||||||||| ||||||    
T  24396859 aagataaaatttctattttcaactttttatcaagtgccctaagggcacttgttaacatttcc 24396920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 355 - 438
Target Start/End: Complemental strand, 2248830 - 2248747
Alignment:
Q  355 acttgttaaggattcaaaaaatggaaacagttgataacttttatgtnnnnnnngttactttttgatgttttaacgtgttgaata 438  Q
    ||||||||||||||||||||| |||||||  |||||| ||| ||||       |||||||||| |||||| || ||||||||||    
T  2248830 acttgttaaggattcaaaaaaaggaaacaaatgataagtttgatgttgaaaaagttactttttaatgtttcaatgtgttgaata 2248747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 67; Significance: 1e-29; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 351 - 510
Target Start/End: Original strand, 49805957 - 49806116
Alignment:
Q  351 gggcacttgttaaggattcaaaaaatggaaacagttgataacttttatgtnnnnnnngttactttttgatgttttaacgtgttgaataaataaatttcaa 450  Q
    |||||| |||||| |||| ||||||| |||||| || |||||||||||||       |||||||||| || |||||| |||||||||  | |||||||||    
T  49805957 gggcacatgttaaagatttaaaaaatagaaacaatttataacttttatgtagaaaaagttacttttttatattttaatgtgttgaatgcacaaatttcaa 49806056  T
Q  451 gataaaatttttattttaaacctcttataaagtgctctaagggcacttgttaatatttcc 510  Q
    || ||||||||||||||||||||||||| |||||  |||||| ||||| |||||||||||    
T  49806057 gacaaaatttttattttaaacctcttatcaagtgtcctaaggacacttattaatatttcc 49806116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 354 - 478
Target Start/End: Original strand, 27262735 - 27262859
Alignment:
Q  354 cacttgttaaggattcaaaaaatggaaacagttgataacttttatgtnnnnnnngttactttttgatgttttaacgtgttgaataaataaatttcaagat 453  Q
    ||||||||||||||||||||||| |||||| ||||||||||||||||        ||||||||| ||||||||| |||||||||| | |||||  ||||     
T  27262735 cacttgttaaggattcaaaaaatagaaacaattgataacttttatgtagaaaaaattactttttaatgttttaatgtgttgaatacacaaattctaagac 27262834  T
Q  454 aaaatttttattttaaacctcttat 478  Q
    |||||||  ||||||||| ||||||    
T  27262835 aaaatttccattttaaacttcttat 27262859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 409 - 502
Target Start/End: Original strand, 26761214 - 26761308
Alignment:
Q  409 ttacttttt-gatgttttaacgtgttgaataaataaatttcaagataaaatttttattttaaacctcttataaagtgctctaagggcacttgtta 502  Q
    ||||||||| |||||||||| |||||||||| | |||||| ||||||||||||| |||||||||||||||| || ||| |||| |||| ||||||    
T  26761214 ttactttttcgatgttttaatgtgttgaatacacaaattttaagataaaattttcattttaaacctcttatcaaatgccctaaaggcatttgtta 26761308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 408 - 512
Target Start/End: Complemental strand, 44698096 - 44697992
Alignment:
Q  408 gttactttttgatgttttaacgtgttgaataaataaatttcaagataaaatttttattttaaacctcttataaagtgctctaagggcacttgttaatatt 507  Q
    |||||||||| |||||| ||  ||||||||| | || || |||||||||| ||  | ||||||| | |||| |||||| |||||||||||||||| ||||    
T  44698096 gttactttttaatgtttcaatatgttgaatacacaacttccaagataaaacttccactttaaacttattatcaagtgccctaagggcacttgttagtatt 44697997  T
Q  508 tccct 512  Q
    |||||    
T  44697996 tccct 44697992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 351 - 399
Target Start/End: Complemental strand, 52698554 - 52698507
Alignment:
Q  351 gggcacttgttaaggattcaaaaaatggaaacagttgataacttttatg 399  Q
    |||||||||||||||||| |||||||||||||| |||||||||||||||    
T  52698554 gggcacttgttaaggatt-aaaaaatggaaacaattgataacttttatg 52698507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 355 - 463
Target Start/End: Original strand, 50015549 - 50015657
Alignment:
Q  355 acttgttaaggattcaaaaaatggaaacagttgataacttttatgtnnnnnnngttactttttgatgttttaacgtgttgaataaataaatttcaagata 454  Q
    |||||||||| ||||||||||| |||||| ||||||| |||| |||       ||||||||||||| ||| || |||||||||| | ||||| ||||| |    
T  50015549 acttgttaagaattcaaaaaatagaaacaattgataaattttttgtataaaaagttactttttgatttttgaatgtgttgaatatacaaattccaagaca 50015648  T
Q  455 aaattttta 463  Q
    || ||||||    
T  50015649 aagttttta 50015657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 351 - 501
Target Start/End: Complemental strand, 7445036 - 7444887
Alignment:
Q  351 gggcacttgttaaggattcaaaaaatggaaacagttgataacttttatgtnnnnnnngttactttttgatgttttaacgtgttgaataaataaatttcaa 450  Q
    ||||||||||||| ||||| |||| | |||| | ||||||||||| ||||       ||| ||||||||| ||| || |||||||||| | |||| ||||    
T  7445036 gggcacttgttaaagattctaaaa-tagaaataattgataactttcatgtataaaaagttgctttttgatatttcaatgtgttgaatacacaaatctcaa 7444938  T
Q  451 gataaaatttttattttaaacctcttataaagtgctctaagggcacttgtt 501  Q
    |||||| ||| |  ||| ||  |||||| |||||| |||||||||||||||    
T  7444937 gataaagtttcttctttgaatttcttatcaagtgccctaagggcacttgtt 7444887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 408 - 484
Target Start/End: Complemental strand, 11451928 - 11451852
Alignment:
Q  408 gttactttttgatgttttaacgtgttgaataaataaatttcaagataaaatttttattttaaacctcttataaagtg 484  Q
    |||||||||| || ||| ||||||||||||| |||| | |||| ||||||||| || ||||||| | |||| |||||    
T  11451928 gttactttttaatatttcaacgtgttgaatacataactctcaatataaaatttctactttaaactttttatcaagtg 11451852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 64; Significance: 9e-28; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 409 - 512
Target Start/End: Complemental strand, 43767354 - 43767251
Alignment:
Q  409 ttactttttgatgttttaacgtgttgaataaataaatttcaagataaaatttttattttaaacctcttataaagtgctctaagggcacttgttaatattt 508  Q
    ||||||||||||||||||| |||||||||  | ||||||||||| |||||||| |||||||||||||||| || ||| ||||||||||||||||| ||||    
T  43767354 ttactttttgatgttttaatgtgttgaatgcacaaatttcaagacaaaattttcattttaaacctcttatcaattgccctaagggcacttgttaacattt 43767255  T
Q  509 ccct 512  Q
    ||||    
T  43767254 ccct 43767251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 351 - 512
Target Start/End: Complemental strand, 24487857 - 24487696
Alignment:
Q  351 gggcacttgttaaggattcaaaaaatggaaacagttgataacttttatgtnnnnnnngttactttttgatgttttaacgtgttgaataaataaatttcaa 450  Q
    ||||||||||||| |||||||||||| |||||| ||||||||||||||||       |||| |||||||||||||||  |||||| | || | || ||||    
T  24487857 gggcacttgttaatgattcaaaaaatagaaacaattgataacttttatgtagaaaaagttaatttttgatgttttaatatgttgagtgaacatatgtcaa 24487758  T
Q  451 gataaaatttttattttaaacctcttataaagtgctctaagggcacttgttaatatttccct 512  Q
    || |||||||  |||||||| ||||||| |||| |  |||||| ||||||||| ||||||||    
T  24487757 gacaaaatttccattttaaaactcttatcaagttccttaagggtacttgttaacatttccct 24487696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 358 - 502
Target Start/End: Complemental strand, 54457590 - 54457446
Alignment:
Q  358 tgttaaggattcaaaaaatggaaacagttgataacttttatgtnnnnnnngttactttttgatgttttaacgtgttgaataaataaatttcaagataaaa 457  Q
    |||||||||||||| ||||| |||||  ||||||||||  |||       ||| ||||||||| ||| || |||||||||| |||||||| ||||||||     
T  54457590 tgttaaggattcaataaatgaaaacaactgataactttgttgtagaaagagttgctttttgatatttcaatgtgttgaatacataaattttaagataaat 54457491  T
Q  458 tttttattttaaacctcttataaagtgctctaagggcacttgtta 502  Q
    |||||||||||| | |||||| |||||||||||| ||||||||||    
T  54457490 tttttattttaatcttcttattaagtgctctaagagcacttgtta 54457446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 352 - 512
Target Start/End: Original strand, 31732064 - 31732224
Alignment:
Q  352 ggcacttgttaaggattcaaaaaatggaaacagttgataacttttatgtnnnnnnngttactttttgatgttttaacgtgttgaataaataaatttcaag 451  Q
    |||||||||||||||||||||||||||||| | || |||||||| ||||       ||| ||||||||||||| ||  ||||||||| | ||||  ||||    
T  31732064 ggcacttgttaaggattcaaaaaatggaaataattcataactttcatgttgaaaaagttgctttttgatgtttcaatatgttgaatacacaaatcccaag 31732163  T
Q  452 ataaaatttttattttaaacctcttataaagtgctctaagggcacttgttaatatttccct 512  Q
    |||||| ||  ||||||  | ||||||  ||||| | ||||||||||||||  ||||||||    
T  31732164 ataaaacttccattttaggcttcttatctagtgccccaagggcacttgttagcatttccct 31732224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 361 - 477
Target Start/End: Complemental strand, 53248719 - 53248603
Alignment:
Q  361 taaggattcaaaaaatggaaacagttgataacttttatgtnnnnnnngttactttttgatgttttaacgtgttgaataaataaatttcaagataaaattt 460  Q
    |||||||||||||||| |||||| ||||||||||||||||       ||||||||||| | ||||||  ||||||||| | ||||||||||| ||| |||    
T  53248719 taaggattcaaaaaatagaaacaattgataacttttatgtataaaaagttactttttggttttttaatatgttgaatatacaaatttcaagacaaagttt 53248620  T
Q  461 ttattttaaacctctta 477  Q
      |||| |||| |||||    
T  53248619 ccatttaaaacttctta 53248603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 351 - 399
Target Start/End: Complemental strand, 38094392 - 38094344
Alignment:
Q  351 gggcacttgttaaggattcaaaaaatggaaacagttgataacttttatg 399  Q
    |||||||| ||||||||||||||||| |||||| |||||||||||||||    
T  38094392 gggcacttattaaggattcaaaaaatagaaacaattgataacttttatg 38094344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 57; Significance: 1e-23; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 408 - 508
Target Start/End: Original strand, 10409685 - 10409785
Alignment:
Q  408 gttactttttgatgttttaacgtgttgaataaataaatttcaagataaaatttttattttaaacctcttataaagtgctctaagggcacttgttaatatt 507  Q
    |||||||||||||||||||| ||||| |||| | || |||||||||||| ||| ||||||||||||||||| |||||   ||||||||||||||||||||    
T  10409685 gttactttttgatgttttaatgtgttaaatacacaagtttcaagataaagtttctattttaaacctcttatcaagtgtcttaagggcacttgttaatatt 10409784  T
Q  508 t 508  Q
    |    
T  10409785 t 10409785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 412 - 471
Target Start/End: Complemental strand, 24585887 - 24585828
Alignment:
Q  412 ctttttgatgttttaacgtgttgaataaataaatttcaagataaaatttttattttaaac 471  Q
    |||||||||||||||| |||||||||||| ||||||||||||||||||| ||||||||||    
T  24585887 ctttttgatgttttaatgtgttgaataaacaaatttcaagataaaatttctattttaaac 24585828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 371 - 511
Target Start/End: Complemental strand, 32615938 - 32615798
Alignment:
Q  371 aaaaatggaaacagttgataacttttatgtnnnnnnngttactttttgatgttttaacgtgttgaataaataaatttcaagataaaatttttattttaaa 470  Q
    |||||| |||||| ||||||||||| ||||       |||  ||||| |||||| || |||||||||| |  |||| ||||||||||||| || ||||||    
T  32615938 aaaaatagaaacaattgataactttcatgtaaataaagttgttttttaatgtttcaatgtgttgaatacacgaattccaagataaaatttctactttaaa 32615839  T
Q  471 cctcttataaagtgctctaagggcacttgttaatatttccc 511  Q
    | |||||| |||||| ||||||||||||||||| |||||||    
T  32615838 cttcttatcaagtgccctaagggcacttgttaacatttccc 32615798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 354 - 512
Target Start/End: Original strand, 13521699 - 13521856
Alignment:
Q  354 cacttgttaaggattcaaaaaatggaaacagttgataacttttatgtnnnnnnngttactttttgatgttttaacgtgttgaataaataaatttcaagat 453  Q
    |||||||||||||| |||||| | |||| | ||||||||||| ||||        ||| ||||| |||||| || |||| ||||| | ||||||||| ||    
T  13521699 cacttgttaaggatacaaaaa-tagaaataattgataactttcatgtaaataaaattattttttaatgtttcaatgtgtagaatacacaaatttcaaaat 13521797  T
Q  454 aaaatttttattttaaacctcttataaagtgctctaagggcacttgttaatatttccct 512  Q
    ||||||| || ||||||| |||||| | |||| ||||| ||||||||||| ||||||||    
T  13521798 aaaatttctactttaaacttcttatcaggtgccctaagagcacttgttaacatttccct 13521856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 354 - 511
Target Start/End: Original strand, 13611234 - 13611390
Alignment:
Q  354 cacttgttaaggattcaaaaaatggaaacagttgataacttttatgtnnnnnnngttactttttgatgttttaacgtgttgaataaataaatttcaagat 453  Q
    |||||||||||||| |||||| | |||| | ||||||||||| ||||        ||| ||||| |||||| || |||| ||||| | ||||||||| ||    
T  13611234 cacttgttaaggatacaaaaa-tagaaataattgataactttcatgtaaataaaattattttttaatgtttcaatgtgtagaatacacaaatttcaaaat 13611332  T
Q  454 aaaatttttattttaaacctcttataaagtgctctaagggcacttgttaatatttccc 511  Q
    ||||||| || ||||||| |||||| | |||| ||||| ||||||||||| |||||||    
T  13611333 aaaatttctactttaaacttcttatcaggtgccctaagagcacttgttaacatttccc 13611390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 357 - 478
Target Start/End: Original strand, 39900259 - 39900378
Alignment:
Q  357 ttgttaaggattcaaaaaatggaaacagttgataacttttatgtnnnnnnngttactttttgatgttttaacgtgttgaataaataaatttcaagataaa 456  Q
    |||||||||||||||||||| |||| | ||||||||||||||||        ||||||||||||||||||| |||||||||  | ||||||||||| |      
T  39900259 ttgttaaggattcaaaaaatagaaataattgataacttttatgtaaaaaa--ttactttttgatgttttaatgtgttgaatgtacaaatttcaagaaatt 39900356  T
Q  457 atttttattttaaacctcttat 478  Q
     |||  ||||||||||||||||    
T  39900357 ttttccattttaaacctcttat 39900378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 412 - 508
Target Start/End: Complemental strand, 29912200 - 29912106
Alignment:
Q  412 ctttttgatgttttaacgtgttgaataaataaatttcaagataaaatttttattttaaacctcttataaagtgctctaagggcacttgttaatattt 508  Q
    ||||||||||||| || | |||||||| | |||||| |||||||||||| || ||||||| |||||| |||||| |  |||||||||||||| ||||    
T  29912200 ctttttgatgtttcaatgagttgaatacacaaattttaagataaaatttctactttaaacttcttatcaagtgccc--agggcacttgttaacattt 29912106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 411 - 508
Target Start/End: Complemental strand, 41570104 - 41570007
Alignment:
Q  411 actttttgatgttttaacgtgttgaataaataaatttcaagataaaatttttattttaaacctcttataaagtgctctaagggcacttgttaatattt 508  Q
    |||||||||| ||| || |||||||||| ||||||  ||||||||||||| || ||||||  |||||| ||||| ||||||| ||| |||||| ||||    
T  41570104 actttttgatatttcaatgtgttgaatacataaatcccaagataaaatttctactttaaatttcttatcaagtgttctaaggacacctgttaacattt 41570007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 413 - 478
Target Start/End: Original strand, 28626689 - 28626754
Alignment:
Q  413 tttttgatgttttaacgtgttgaataaataaatttcaagataaaatttttattttaaacctcttat 478  Q
    |||||||||||| || || ||||| | ||||||||||||||||| |||||| ||||||| ||||||    
T  28626689 tttttgatgtttcaatgtattgaagacataaatttcaagataaattttttactttaaacttcttat 28626754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 371 - 512
Target Start/End: Complemental strand, 42964887 - 42964747
Alignment:
Q  371 aaaaatggaaacagttgataacttttatgtnnnnnnngttactttttgatgttttaacgtgttgaataaataaatttcaagataaaatttttattttaaa 470  Q
    ||||||||||| | ||||||||||| ||||       |||| |||||||||||| || |||||||||| | || |  |||||||||||||  | ||||||    
T  42964887 aaaaatggaaataattgataactttcatgtagaaaaagttattttttgatgtttcaatgtgttgaatacacaa-tcccaagataaaatttccactttaaa 42964789  T
Q  471 cctcttataaagtgctctaagggcacttgttaatatttccct 512  Q
    | |||||| |||||| ||| ||| ||||||||  ||||||||    
T  42964788 cttcttatcaagtgccctaggggaacttgttagcatttccct 42964747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 408 - 512
Target Start/End: Original strand, 7859166 - 7859270
Alignment:
Q  408 gttactttttgatgttttaacgtgttgaataaataaatttcaagataaaatttttattttaaacctcttataaagtgctctaagggcacttgttaatatt 507  Q
    |||||||||| ||||||||| |||||||||| | || ||  |||||||||||   | ||||||| | |||| ||| |  ||||||||||||||||  |||    
T  7859166 gttactttttaatgttttaatgtgttgaatacacaacttaaaagataaaattaccactttaaactttttatcaagggtcctaagggcacttgttaggatt 7859265  T
Q  508 tccct 512  Q
    |||||    
T  7859266 tccct 7859270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 51; Significance: 5e-20; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 359 - 470
Target Start/End: Complemental strand, 5497860 - 5497749
Alignment:
Q  359 gttaaggattcaaaaaatggaaacagttgataacttttatgtnnnnnnngttactttttgatgttttaacgtgttgaataaataaatttcaagataaaat 458  Q
    |||||||||||| |||||||||||||||||||||||||||||       ||||||||||||||||| |  || || |||| |||||||| ||||||||||    
T  5497860 gttaaggattcagaaaatggaaacagttgataacttttatgtagaaaaagttactttttgatgtttcattgtattaaatacataaattttaagataaaat 5497761  T
Q  459 ttttattttaaa 470  Q
    ||  ||||||||    
T  5497760 ttccattttaaa 5497749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 408 - 512
Target Start/End: Original strand, 23568038 - 23568142
Alignment:
Q  408 gttactttttgatgttttaacgtgttgaataaataaatttcaagataaaatttttattttaaacctcttataaagtgctctaagggcacttgttaatatt 507  Q
    ||||||||||||| ||| || || ||||||| | ||||||||||||||| |||  |||| |||| |||||| |||||| |  ||| |||||||||| |||    
T  23568038 gttactttttgatttttcaatgtattgaatatacaaatttcaagataaagtttccatttaaaacttcttatcaagtgcccctaggacacttgttaacatt 23568137  T
Q  508 tccct 512  Q
    |||||    
T  23568138 tccct 23568142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 421 - 470
Target Start/End: Original strand, 37177164 - 37177213
Alignment:
Q  421 gttttaacgtgttgaataaataaatttcaagataaaatttttattttaaa 470  Q
    |||||||||||||||||| | ||||||||||||| |||||||| ||||||    
T  37177164 gttttaacgtgttgaatatacaaatttcaagatacaatttttaatttaaa 37177213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 353 - 462
Target Start/End: Original strand, 51834745 - 51834854
Alignment:
Q  353 gcacttgttaaggattcaaaaaatggaaacagttgataacttttatgtnnnnnnngttactttttgatgttttaacgtgttgaataaataaatttcaaga 452  Q
    ||||||||||| |||  ||||||| |||| |  |||||||||| ||||       ||| ||||||| ||||| |||| |||||||| | |||||||||||    
T  51834745 gcacttgttaatgataaaaaaaatagaaataaatgataactttcatgtagataaagttgctttttggtgtttcaacgagttgaatacacaaatttcaaga 51834844  T
Q  453 taaaattttt 462  Q
    ||||||||||    
T  51834845 taaaattttt 51834854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 432 - 508
Target Start/End: Original strand, 26009749 - 26009825
Alignment:
Q  432 ttgaataaataaatttcaagataaaatttttattttaaacctcttataaagtgctctaagggcacttgttaatattt 508  Q
    ||||||| | ||||| ||||||||| |||||| ||||||  |||||| |||||   |||||||||||||||| ||||    
T  26009749 ttgaatacacaaattccaagataaagtttttactttaaatttcttatcaagtgtcttaagggcacttgttaacattt 26009825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 365 - 438
Target Start/End: Complemental strand, 37627049 - 37626976
Alignment:
Q  365 gattcaaaaaatggaaacagttgataacttttatgtnnnnnnngttactttttgatgttttaacgtgttgaata 438  Q
    |||| ||||||| |||||| ||||||||||||||||       |||||||||| |||||| || ||||||||||    
T  37627049 gatttaaaaaatagaaacaattgataacttttatgtagaaaaagttactttttaatgtttaaatgtgttgaata 37626976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 51; Significance: 5e-20; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 351 - 502
Target Start/End: Original strand, 11074492 - 11074642
Alignment:
Q  351 gggcacttgttaaggattcaaaaaatggaaacagttgataacttttatgtnnnnnnngttactttttgatgttttaacgtgttgaataaataaatttcaa 450  Q
    |||||||||||||||||||||||| |||||||| | ||||||||  |||        ||| |||||| |||||| || |||||||||| | ||||  |||    
T  11074492 gggcacttgttaaggattcaaaaa-tggaaacaatagataacttccatgcagaaaaagttgcttttttatgtttcaatgtgttgaatacacaaatcccaa 11074590  T
Q  451 gataaaatttttattttaaacctcttataaagtgctctaagggcacttgtta 502  Q
    || ||||||| || ||||||| |||||| |||||||||||||||||||||||    
T  11074591 gaaaaaatttctactttaaacttcttatcaagtgctctaagggcacttgtta 11074642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 409 - 508
Target Start/End: Complemental strand, 37744083 - 37743982
Alignment:
Q  409 ttactttttgatgttttaacgtgttgaataaataaatttcaagataaaatttttattttaaacctcttat--aaagtgctctaagggcacttgttaatat 506  Q
    |||| ||||||||||||||  | ||||||| |||||||| ||||||||||||||||||||||| ||||||  |||||| | |||||| | |||||| |||    
T  37744083 ttaccttttgatgttttaatatattgaatacataaattttaagataaaatttttattttaaacttcttatcaaaagtgatttaagggtaattgttagtat 37743984  T
Q  507 tt 508  Q
    ||    
T  37743983 tt 37743982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 409 - 477
Target Start/End: Complemental strand, 8701109 - 8701041
Alignment:
Q  409 ttactttttgatgttttaacgtgttgaataaataaatttcaagataaaatttttattttaaacctctta 477  Q
    |||||||||  |||||||| |||||||||| |||| ||| ||||||||||||||||||||||| |||||    
T  8701109 ttactttttattgttttaatgtgttgaatacataatttttaagataaaatttttattttaaacttctta 8701041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 351 - 427
Target Start/End: Complemental strand, 38788845 - 38788769
Alignment:
Q  351 gggcacttgttaaggattcaaaaaatggaaacagttgataacttttatgtnnnnnnngttactttttgatgttttaa 427  Q
    |||||||||||||||||||||||||| |||||| |||| |||||| ||||       ||||||||||||||||||||    
T  38788845 gggcacttgttaaggattcaaaaaatagaaacaattgacaactttcatgtagaaaaagttactttttgatgttttaa 38788769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 351 - 495
Target Start/End: Original strand, 40141938 - 40142081
Alignment:
Q  351 gggcacttgttaaggattcaaaaaatggaaacagttgataacttttatgtnnnnnnngttactttttgatgttttaacgtgttgaataaataaatttcaa 450  Q
    |||||||||||||||| | ||||||| ||||||  | |||||||| ||||       ||| ||||||| ||||| || | |||||||| | |||||| ||    
T  40141938 gggcacttgttaagga-taaaaaaatagaaacaaattataactttcatgtagataaagttgctttttggtgtttcaatgagttgaatatacaaattttaa 40142036  T
Q  451 gataaaatttttattttaaacctcttataaagtgctctaagggca 495  Q
    |||||| |||||| ||||||| |||||| || |||||| ||||||    
T  40142037 gataaattttttactttaaacttcttatcaactgctcttagggca 40142081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 351 - 397
Target Start/End: Complemental strand, 7669976 - 7669930
Alignment:
Q  351 gggcacttgttaaggattcaaaaaatggaaacagttgataactttta 397  Q
    |||||||||||||||||||||||||| |||||| ||||||| |||||    
T  7669976 gggcacttgttaaggattcaaaaaattgaaacaattgataagtttta 7669930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 413 - 502
Target Start/End: Original strand, 16011848 - 16011937
Alignment:
Q  413 tttttgatgttttaacgtgttgaataaataaatttcaagataaaatttttattttaaacctcttataaagtgctctaagggcacttgtta 502  Q
    |||||||| |||||| ||||| |||| ||||||| |||||||||| || || ||||||| | |||  |  ||||||||||||||||||||    
T  16011848 tttttgattttttaatgtgtttaatacataaattccaagataaaacttctactttaaacttattaacagatgctctaagggcacttgtta 16011937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 423 - 503
Target Start/End: Original strand, 8741037 - 8741117
Alignment:
Q  423 tttaacgtgttgaataaataaatttcaagataaaatttttattttaaacctcttataaagtgctctaagggcacttgttaa 503  Q
    ||||| || ||||||| | ||||| ||||||||||||| |||||||||| | ||||||||||   ||| ||||||||||||    
T  8741037 tttaatgtattgaatacacaaattccaagataaaatttctattttaaacttgttataaagtgtcgtaaaggcacttgttaa 8741117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 409 - 470
Target Start/End: Complemental strand, 34335081 - 34335021
Alignment:
Q  409 ttactttttgatgttttaacgtgttgaataaataaatttcaagataaaatttttattttaaa 470  Q
    |||||||||||||||| || || ||||||| |||||||| |||||||||||| || ||||||    
T  34335081 ttactttttgatgtttcaatgt-ttgaatatataaattttaagataaaatttctactttaaa 34335021  T

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Target: chr5 (Bit Score: 46; Significance: 5e-17; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 408 - 509
Target Start/End: Complemental strand, 40323923 - 40323822
Alignment:
Q  408 gttactttttgatgttttaacgtgttgaataaataaatttcaagataaaatttttattttaaacctcttataaagtgctctaagggcacttgttaatatt 507  Q
    |||||||||||||||||||| ||||| |||| | || |||||||||||| |||  ||||||||||| |||| ||||||  |||||||| ||||||| |||    
T  40323923 gttactttttgatgttttaatgtgttcaatacacaagtttcaagataaagtttccattttaaacctattatcaagtgccataagggcatttgttaacatt 40323824  T
Q  508 tc 509  Q
    ||    
T  40323823 tc 40323822  T

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Target: chr5; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 354 - 485
Target Start/End: Original strand, 9784383 - 9784509
Alignment:
Q  354 cacttgttaaggattcaaaaaatggaaacagttgataacttttatgtnnnnnnngttactttttgatgttttaacgtgttgaataaataaatttcaagat 453  Q
    ||||||||||| ||||||||||| |||| | ||||||||||||||||          ||||||||||||||||| ||||  |||  | |||||||||||     
T  9784383 cacttgttaagaattcaaaaaatagaaataattgataacttttatgtataaa-----actttttgatgttttaatgtgtaaaatgcacaaatttcaagac 9784477  T
Q  454 aaaatttttattttaaacctcttataaagtgc 485  Q
    ||||||| ||||||||||||||||| ||||||    
T  9784478 aaaatttctattttaaacctcttatcaagtgc 9784509  T

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Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 354 - 400
Target Start/End: Original strand, 41360880 - 41360926
Alignment:
Q  354 cacttgttaaggattcaaaaaatggaaacagttgataacttttatgt 400  Q
    |||||||||| ||||||||||||| ||||| ||||||||||||||||    
T  41360880 cacttgttaaagattcaaaaaatgaaaacaattgataacttttatgt 41360926  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 408 - 510
Target Start/End: Complemental strand, 1863169 - 1863067
Alignment:
Q  408 gttactttttgatgttttaacgtgttgaataaataaatttcaagataaaatttttattttaaacctcttataaagtgctctaagggcacttgttaatatt 507  Q
    |||||||||| |  ||| || |||||||||| || | || ||||||||||||| | |||||||| |||||  |||||| | |||| |||||||||| |||    
T  1863169 gttactttttaaactttcaatgtgttgaatacatcatttccaagataaaatttattttttaaacttcttaacaagtgcgccaaggacacttgttaacatt 1863070  T
Q  508 tcc 510  Q
    |||    
T  1863069 tcc 1863067  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 413 - 469
Target Start/End: Complemental strand, 6562689 - 6562633
Alignment:
Q  413 tttttgatgttttaacgtgttgaataaataaatttcaagataaaatttttattttaa 469  Q
    |||||||||||| || |||||||||| | |||||| || |||||||||||| |||||    
T  6562689 tttttgatgtttcaatgtgttgaatacacaaattttaaaataaaatttttactttaa 6562633  T

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Target: chr7 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 408 - 502
Target Start/End: Original strand, 6707638 - 6707732
Alignment:
Q  408 gttactttttgatgttttaacgtgttgaataaataaatttcaagataaaatttttattttaaacctcttataaagtgctctaagggcacttgtta 502  Q
    |||| ||||| ||||||||| |||||||||| |||||| | ||| |||||||| || ||||||| |||||||||||  ||| |||||| ||||||    
T  6707638 gttattttttaatgttttaatgtgttgaatacataaatattaaggtaaaatttctactttaaacttcttataaagttatcttagggcatttgtta 6707732  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 357 - 475
Target Start/End: Complemental strand, 47188534 - 47188417
Alignment:
Q  357 ttgttaaggattcaaaaaatggaaacagttgataacttttatgtnnnnnnngttactttttgatgttttaacgtgttgaataaataaatttcaagataaa 456  Q
    |||||||||||||||||| | |||||| || |||||||||||||       ||||||||||||| |||||| ||||||| |  | |||||| |||| |||    
T  47188534 ttgttaaggattcaaaaa-tagaaacaattaataacttttatgtagaaaaagttactttttgatattttaatgtgttgagttcacaaattttaagacaaa 47188436  T
Q  457 atttttattttaaacctct 475  Q
    ||||  |||||||| ||||    
T  47188435 atttccattttaaaactct 47188417  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 351 - 381
Target Start/End: Complemental strand, 28517862 - 28517832
Alignment:
Q  351 gggcacttgttaaggattcaaaaaatggaaa 381  Q
    |||||||||||||||||||||||||||||||    
T  28517862 gggcacttgttaaggattcaaaaaatggaaa 28517832  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 351 - 461
Target Start/End: Complemental strand, 24423555 - 24423446
Alignment:
Q  351 gggcacttgttaaggattcaaaaaatggaaacagttgataacttttatgtnnnnnnngttactttttgatgttttaacgtgttgaataaataaatttcaa 450  Q
    ||||| |||||||||||| || ||||||||||| | ||| ||||| ||||       |||  |||||| ||||| || |||||||||| |||||| ||||    
T  24423555 gggcatttgttaaggatt-aataaatggaaacaatcgatgactttcatgtagaaaaagttgttttttggtgtttcaatgtgttgaatacataaatctcaa 24423457  T
Q  451 gataaaatttt 461  Q
    |||||||||||    
T  24423456 gataaaatttt 24423446  T

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Target: scaffold0074 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0074
Description:

Target: scaffold0074; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 419 - 510
Target Start/End: Original strand, 29749 - 29840
Alignment:
Q  419 atgttttaacgtgttgaataaataaatttcaagataaaatttttattttaaacctcttataaagtgctctaagggcacttgttaatatttcc 510  Q
    |||||| || |||||||||| |  |||| ||||||||||||| || ||| ||| | |||| |||||| |||||||||||| |||| ||||||    
T  29749 atgtttcaatgtgttgaatacacgaattccaagataaaatttctactttcaactttttatcaagtgccctaagggcacttattaacatttcc 29840  T

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