View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2931R-Insertion-1 (Length: 1059)

Name: NF2931R-Insertion-1
Description: NF2931R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2931R-Insertion-1
NF2931R-Insertion-1
[»] chr4 (6 HSPs)
chr4 (370-1007)||(29438347-29438980)
chr4 (700-908)||(13066675-13066884)
chr4 (7-57)||(29438979-29439029)
chr4 (700-927)||(19602775-19602998)
chr4 (806-908)||(19900118-19900220)
chr4 (854-935)||(17183661-17183740)
[»] chr5 (6 HSPs)
chr5 (700-935)||(18281091-18281325)
chr5 (701-757)||(24518198-24518254)
chr5 (700-903)||(15692779-15692980)
chr5 (860-904)||(16621643-16621687)
chr5 (828-888)||(22230834-22230894)
chr5 (843-904)||(16617603-16617664)
[»] chr1 (10 HSPs)
chr1 (700-964)||(25664851-25665114)
chr1 (698-935)||(25132666-25132902)
chr1 (808-907)||(15297623-15297721)
chr1 (843-907)||(34521948-34522012)
chr1 (866-907)||(9329069-9329110)
chr1 (777-877)||(26654232-26654334)
chr1 (860-935)||(14581120-14581195)
chr1 (860-935)||(39428018-39428091)
chr1 (808-906)||(30743509-30743606)
chr1 (866-907)||(9354031-9354072)
[»] chr3 (6 HSPs)
chr3 (7-70)||(38385747-38385810)
chr3 (700-935)||(8713848-8714082)
chr3 (700-935)||(9065735-9065969)
chr3 (854-935)||(12145500-12145580)
chr3 (860-907)||(33913593-33913640)
chr3 (732-907)||(11475891-11476063)
[»] chr7 (6 HSPs)
chr7 (700-908)||(13709051-13709258)
chr7 (832-964)||(9455159-9455293)
chr7 (805-907)||(22334291-22334393)
chr7 (739-896)||(11082575-11082730)
chr7 (698-784)||(21536438-21536523)
chr7 (858-935)||(10924879-10924955)
[»] chr8 (6 HSPs)
chr8 (700-908)||(13581851-13582055)
chr8 (795-887)||(24926781-24926873)
chr8 (867-935)||(30544713-30544779)
chr8 (806-876)||(28290339-28290408)
chr8 (810-907)||(6887186-6887283)
chr8 (858-935)||(18789866-18789942)
[»] scaffold0011 (1 HSPs)
scaffold0011 (860-935)||(227239-227313)
[»] chr2 (2 HSPs)
chr2 (647-843)||(22511861-22512052)
chr2 (648-935)||(27916881-27917163)
[»] scaffold0804 (1 HSPs)
scaffold0804 (860-935)||(837-912)
[»] scaffold0065 (1 HSPs)
scaffold0065 (868-927)||(13291-13348)


Alignment Details
Target: chr4 (Bit Score: 487; Significance: 0; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 487; E-Value: 0
Query Start/End: Original strand, 370 - 1007
Target Start/End: Complemental strand, 29438980 - 29438347
Alignment:
Q  370 gtcctcaatttcccccaatcccttgctgtctttacaacatataggactttaggaaggagacaaggatgaaaccactccaaggtcgtggatggaaggttgc 469  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29438980 gtcctcaatttcccccaatcccttactgtctttacaacatataggactttaggaaggagacaaggatgaaaccactccaaggtcgtggatggaaggttgc 29438881  T
Q  470 ttgatgtcgttcagttgtatatatatccctgaaagtagattcctctgagtatgggttgttggcattacaagaatgcacaattgaagcgacacctctttat 569  Q
    ||||||||||||||||||||||    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29438880 ttgatgtcgttcagttgtatat----ccctgaaagtagattcctctgagtatgggttgttggcattacaagaatgcacaattgaagcgacacctctttat 29438785  T
Q  570 gctgattgttgatgtgtgtcctacgcatgtgtatgatgaagatgacagacacatctacactaataaagggcagttgtgtgatggtgattttagtgaatta 669  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||     
T  29438784 gctgattgttgatgtgtgtcttacgcatgtgtatgatgaagatgacagacacatctacactaataaagggcggttgtgtgatggtgattttagtgaattg 29438685  T
Q  670 attagcaagtgcatcaaacttaccaagtaataataaagtagcaagttaatcgtcaccatagagattctcgttcaactcgataattagcggaatctattta 769  Q
        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||| ||||||||||||    
T  29438684 ----gcaagtgcatcaaacttaccaagtaataataaagtagcaagttaatcgtcaccatagagattctcgttcaactctgtaattagtggaatctattta 29438589  T
Q  770 gtaaaacaaataaaataagagatttaaagtggtcacagggttttaattgtcctgacggatgcgagattaggtttttgtgattatgaagtgtaacggcgat 869  Q
    ||||| |||||||||||||||||||||||||||  |||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||    
T  29438588 gtaaagcaaataaaataagagatttaaagtggtagcagggttttaattgtcttgacgaatgcgagattaggtttttgtgattatgaagtgtaacggcgat 29438489  T
Q  870 tagggaatacttgaatccctcattcgtctttgttggaaaattaaatttagaaatcattagtttata--ctgccttatgtttaga-ttaataaagtag-ac 965  Q
    ||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||   ||||||||||||||| |||||||||||| ||    
T  29438488 tagggaatacttgaatcccccattcgtctttgttgg-aaattaaatttagaaatcattagtttataacttgccttatgtttagatttaataaagtagaac 29438390  T
Q  966 at-actccgtgatg-atcagttgatgtttttattttaacatccc 1007  Q
    || ||||||||||| |||||| || | |||||||||||||||||    
T  29438389 ataactccgtgatgaatcagtggaag-ttttattttaacatccc 29438347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 58; E-Value: 7e-24
Query Start/End: Original strand, 700 - 908
Target Start/End: Complemental strand, 13066884 - 13066675
Alignment:
Q  700 taataaagtagcaagttaatcgtcaccatagagattctcgttcaactcgataattagcggaatctatttagtaaaacaaataaaataagagatttaa-ag 798  Q
    ||||||||||| |||||||||||| | | ||||||| ||||||||||| |||||||| | ||| | ||||| ||||||||||||  || |||||||| ||    
T  13066884 taataaagtagtaagttaatcgtctcaacagagattttcgttcaactccataattagggtaatatgtttagaaaaacaaataaaggaaaagatttaagag 13066785  T
Q  799 tggtcacagggttttaattgtcctgacggatgcgagattaggtttttgtgattatgaagtgtaacggcgattagggaatacttgaatccctcattcgtct 898  Q
    || |  ||||||||||||||||||| |  |||||| ||||||||||  ||  |  || || || | |||||||| ||||  || |||||||| |||||||    
T  13066784 tgattgcagggttttaattgtcctgcccaatgcgaaattaggttttgttggcttagatgtttagcagcgattagagaatcattcaatccctccttcgtct 13066685  T
Q  899 ttgttggaaa 908  Q
    ||||||||||    
T  13066684 ttgttggaaa 13066675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 7 - 57
Target Start/End: Complemental strand, 29439029 - 29438979
Alignment:
Q  7 cagttggcaaattgcaatgtttgcgtagaggaaaacaaacactgcaattgt 57  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29439029 cagttggcaaattgcaatgtttgcgtagaggaaaacaaacactgcaattgt 29438979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 700 - 927
Target Start/End: Complemental strand, 19602998 - 19602775
Alignment:
Q  700 taataaagtagcaagttaatcgtcaccatagagattctcgttcaactcgataattagcggaatctatttagtaaaacaaataaaataagagatttaaagt 799  Q
    |||||||| || |||||||||||| ||| || |||| |||||||||||| |||||||| |||  ||||||| ||| ||||||||| ||||||||   |||    
T  19602998 taataaagcagtaagttaatcgtctccacagggattatcgttcaactcggtaattagctgaacttatttagaaaagcaaataaaagaagagatt--gagt 19602901  T
Q  800 ggtcacagggttttaattgtcctgacggatgcgagattaggtttttgtgattatgaagtgtaacggcgattagggaatacttgaatccctcattcgtctt 899  Q
    |||  || ||||||||||||| |  | |||| |||||| |||||   |||||| || || |||||  |||||  |||| ||| |||| ||||||| ||||    
T  19602900 ggttgcaaggttttaattgtcattcccgatgtgagattgggtttagttgattaagatgtttaacgaagatta-tgaatccttaaatctctcattcttctt 19602802  T
Q  900 tgttggaaaattaaatttagaaatcatt 927  Q
    |||||| |||||||||| |||| |||||    
T  19602801 tgttgg-aaattaaattaagaattcatt 19602775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 806 - 908
Target Start/End: Complemental strand, 19900220 - 19900118
Alignment:
Q  806 agggttttaattgtcctgacggatgcgagattaggtttttgtgattatgaagtgtaacggcgattagggaatacttgaatccctcattcgtctttgttgg 905  Q
    |||||||||||||| ||| |  |||| |||||| ||||||||||||   |||||||||| | |||| ||||| |||||||||  | ||||||||||||||    
T  19900220 agggttttaattgtactgccttatgcaagattaagtttttgtgatttaaaagtgtaacgacaattaaggaatccttgaatcctcccttcgtctttgttgg 19900121  T
Q  906 aaa 908  Q
    |||    
T  19900120 aaa 19900118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 854 - 935
Target Start/End: Original strand, 17183661 - 17183740
Alignment:
Q  854 gaagtgtaacggcgattagggaatacttgaatccctcattcgtctttgttggaaaattaaatttagaaatcattagtttata 935  Q
    ||||| |||||||||||| ||||| |||||||||| ||||| |||||||||| |||||||||  |||||||| |||||||||    
T  17183661 gaagtttaacggcgattatggaatccttgaatccc-cattcatctttgttgg-aaattaaatcgagaaatcagtagtttata 17183740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 68; Significance: 8e-30; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 68; E-Value: 8e-30
Query Start/End: Original strand, 700 - 935
Target Start/End: Original strand, 18281091 - 18281325
Alignment:
Q  700 taataaagtagcaagttaatcgtcaccatagagattctcgttcaactcgataattagcggaatctatttagtaaaacaaataaaataagagatttaaagt 799  Q
    |||||||| || ||||||||||||  || | | ||| |||||||||||| ||||||| ||||||||||||| |||  |||||||| || |||||    ||    
T  18281091 taataaagcagtaagttaatcgtcttcacacaaattttcgttcaactcggtaattagtggaatctatttagaaaagtaaataaaagaaaagattggtcgt 18281190  T
Q  800 ggtcacagggttttaattgtcctgacggatgcgagattaggtttttgtgattatgaagtgtaacggcgattagggaatacttgaatccctcattcgtctt 899  Q
    |||  || || ||||||||||||  |  |||||| ||||| |||||||||||  ||||||||||  |||||||||||| |||||||||  | ||||||||    
T  18281191 ggttgcatggctttaattgtcctacccaatgcgatattagatttttgtgatttagaagtgtaacaacgattagggaatccttgaatcctcccttcgtctt 18281290  T
Q  900 tgttggaaaattaaatttagaaatcattagtttata 935  Q
     ||| | ||||||||| |||||||||||||||||||    
T  18281291 ggttag-aaattaaatatagaaatcattagtttata 18281325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 701 - 757
Target Start/End: Complemental strand, 24518254 - 24518198
Alignment:
Q  701 aataaagtagcaagttaatcgtcaccatagagattctcgttcaactcgataattagc 757  Q
    |||||||||| ||||| |||||| |||||| |||| |||||||||||||||||||||    
T  24518254 aataaagtagtaagtttatcgtctccatagggattgtcgttcaactcgataattagc 24518198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 700 - 903
Target Start/End: Original strand, 15692779 - 15692980
Alignment:
Q  700 taataaagtagcaagttaatcgtcaccatagagattctcgttcaactcgataattagcggaatctatttagtaaaacaaataaaataagagatttaaagt 799  Q
    ||||||| ||| |||||| |||||  || ||||||| || |||||||||||||||| |||||| | ||||  ||  | | |||||||| ||||| |||||    
T  15692779 taataaaatagtaagtta-tcgtcttcacagagattgtcattcaactcgataattaacggaatttgtttaagaagccca-taaaataaaagattgaaagt 15692876  T
Q  800 -ggtcacagggttttaattgtcctgacggatgcgagattaggtttttgtgattatgaagtgtaacggcgattagggaatacttgaatccctcattcgtct 898  Q
     |||  ||||||||||||||||||  |  ||| |||||||||||| | |||||   |||||| ||  |||||||||||| |||||||||| | || ||||    
T  15692877 tggttgcagggttttaattgtcctacctaatgtgagattaggtttat-tgattcataagtgttacaacgattagggaatccttgaatcccccttttgtct 15692975  T
Q  899 ttgtt 903  Q
    |||||    
T  15692976 ttgtt 15692980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 860 - 904
Target Start/End: Original strand, 16621643 - 16621687
Alignment:
Q  860 taacggcgattagggaatacttgaatccctcattcgtctttgttg 904  Q
    ||||| |||||||||||| ||| ||||||||||||||||||||||    
T  16621643 taacgacgattagggaatcctttaatccctcattcgtctttgttg 16621687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 828 - 888
Target Start/End: Complemental strand, 22230894 - 22230834
Alignment:
Q  828 atgcgagattaggtttttgtgattatgaagtgtaacggcgattagggaatacttgaatccc 888  Q
    |||| |||||||||||||||||||| || |  ||||||||||||||| || ||||||||||    
T  22230894 atgcaagattaggtttttgtgattaagatgattaacggcgattagggtatccttgaatccc 22230834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 843 - 904
Target Start/End: Original strand, 16617603 - 16617664
Alignment:
Q  843 tttgtgattatgaagtgtaacggcgattagggaatacttgaatccctcattcgtctttgttg 904  Q
    |||||||||  || || ||||| |||||||||||| ||| |||| |||||||||||||||||    
T  16617603 tttgtgattcagaggtttaacgacgattagggaatcctttaatctctcattcgtctttgttg 16617664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 65; Significance: 5e-28; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 65; E-Value: 5e-28
Query Start/End: Original strand, 700 - 964
Target Start/End: Original strand, 25664851 - 25665114
Alignment:
Q  700 taataaagtagcaagttaatcgtcaccatagagattctcgttcaactcgataattagcggaatctatttagtaaaacaaataaaataagagattt-aaag 798  Q
    ||||||||||| ||||||||| || | |||| |||| |||||||||||| ||||||||| |||||||||||| || |||||||||||| |||||| || |    
T  25664851 taataaagtagtaagttaatcatctcgatagggattgtcgttcaactcggtaattagcgaaatctatttagt-aagcaaataaaataaaagatttgaagg 25664949  T
Q  799 tggtcacagggttttaattgtcctgacggatgcgagattaggtttttgtgattatgaagtgtaacggcgattagggaatacttgaatccctcattcgtct 898  Q
    |||| | ||||||||||||||| || |  ||||||||||| |||||| | |||  ||||| |||||| ||||| ||||  |||||||||| | |  || |    
T  25664950 tggttatagggttttaattgtcatgtccaatgcgagattaagtttttctaattcagaagtttaacggtgatta-ggaaaccttgaatccc-cctctgtgt 25665047  T
Q  899 ttgttggaaaattaaatttagaaatcattagtttatact--gccttatgtttagattaataaagtaga 964  Q
    ||||||| ||| ||||   |||||||||||||||||| |  |||||| ||||||||| | ||||||||    
T  25665048 ttgttgg-aaagtaaaacaagaaatcattagtttataattggccttaagtttagatttacaaagtaga 25665114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 698 - 935
Target Start/End: Original strand, 25132666 - 25132902
Alignment:
Q  698 aataataaagtagcaagttaatcgtcaccatagagattctcgttcaactcgataattagcggaatctatttagtaaaacaaataaaataagagatttaaa 797  Q
    ||||||||| ||  ||||||||| || ||| |  |||| ||||||||||||| || ||||||||||| ||||| ||| ||||||||| |  |||||| ||    
T  25132666 aataataaattaataagttaatcatctccacatggattgtcgttcaactcgacaactagcggaatctttttagaaaagcaaataaaagagaagatttgaa 25132765  T
Q  798 gtggtcacagggttttaattgtcctgacggatgcgagattaggtttttgtgattatgaagtgtaacggcgattagggaatacttgaatccctcattcgtc 897  Q
    ||| |  ||| ||||||||||||||  |  |||  |||||| ||||   |||||   | || |||||| ||||||||||| |||||||| | | ||| ||    
T  25132766 gtgattgcagagttttaattgtccttccaaatgtcagattaagtttggttgattcaaatgtttaacggtgattagggaatccttgaatctccccttcatc 25132865  T
Q  898 tttgttggaaaattaaatttagaaatcattagtttata 935  Q
    |||||||| || |||||| |||||||| ||||||||||    
T  25132866 tttgttgg-aatttaaatatagaaatctttagtttata 25132902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 808 - 907
Target Start/End: Original strand, 15297623 - 15297721
Alignment:
Q  808 ggttttaattgtcctgacggatgcgagattaggtttttgtgattatgaagtgtaacggcgattagggaatacttgaatccctcattcgtctttgttggaa 907  Q
    |||||||||||| ||| |  ||||||||||||||||| ||||||  || || |||||  ||||||||||| |||||||||||||| |||||||| |||||    
T  15297623 ggttttaattgtactgcccaatgcgagattaggtttt-gtgattcagaggtataacgatgattagggaatccttgaatccctcatccgtctttgctggaa 15297721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 843 - 907
Target Start/End: Complemental strand, 34522012 - 34521948
Alignment:
Q  843 tttgtgattatgaagtgtaacggcgattagggaatacttgaatccctcattcgtctttgttggaa 907  Q
    |||||||||  || || ||||| |||||||||||| |||||||||||| ||||||||||||||||    
T  34522012 tttgtgatttagaggtttaacgacgattagggaatccttgaatccctccttcgtctttgttggaa 34521948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 866 - 907
Target Start/End: Complemental strand, 9329110 - 9329069
Alignment:
Q  866 cgattagggaatacttgaatccctcattcgtctttgttggaa 907  Q
    ||||||||||||||||||||||||| ||| ||||||||||||    
T  9329110 cgattagggaatacttgaatccctccttcatctttgttggaa 9329069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 777 - 877
Target Start/End: Original strand, 26654232 - 26654334
Alignment:
Q  777 aaataaaataagagatttaaagtggtcacagggttttaattg---tcctgacggatgcgagattaggtttttgtgattatgaagtgtaacggcgattagg 873  Q
    |||||||| |||||||| |||||||| |||  |||||||||    ||||| |  |||||||||||||||||| ||||| | |||||||||||| ||||||    
T  26654232 aaataaaagaagagattaaaagtggttacatagttttaattcatctcctgtccaatgcgagattaggttttt-tgattcttaagtgtaacggcaattagg 26654330  T
Q  874 gaat 877  Q
    ||||    
T  26654331 gaat 26654334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 860 - 935
Target Start/End: Complemental strand, 14581195 - 14581120
Alignment:
Q  860 taacggcgattagggaatacttgaatccctca-ttcgtctttgttggaaaattaaatttagaaatcattagtttata 935  Q
    |||| ||||||||||||| |||||||||| || |||||||||||||| |||||||||  | |||| |||||||||||    
T  14581195 taactgcgattagggaatccttgaatcccccacttcgtctttgttgg-aaattaaatacataaattattagtttata 14581120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 860 - 935
Target Start/End: Original strand, 39428018 - 39428091
Alignment:
Q  860 taacggcgattagggaatacttgaatccctcattcgtctttgttggaaaattaaatttagaaatcattagtttata 935  Q
    |||||||||||||| ||| |||||||||| | || ||||||||| |||||||||||| |  |||||||||||||||    
T  39428018 taacggcgattaggaaatccttgaatccc-ccttggtctttgtt-gaaaattaaattgaataatcattagtttata 39428091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 808 - 906
Target Start/End: Original strand, 30743509 - 30743606
Alignment:
Q  808 ggttttaattgtcctgacggatgcgagattaggtttttgtgattatgaagtgtaacggcgattagggaatacttgaatccctcattcgtctttgttgga 906  Q
    |||||||||||||||  |  |||| |||||| |||||  |||||  ||||| |||||||||||||| |||  |||||||||||  ||||||||||||||    
T  30743509 ggttttaattgtcctacccaatgcaagattaagttttgttgatttagaagtttaacggcgattaggaaatcattgaatccctc-ctcgtctttgttgga 30743606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 866 - 907
Target Start/End: Complemental strand, 9354072 - 9354031
Alignment:
Q  866 cgattagggaatacttgaatccctcattcgtctttgttggaa 907  Q
    |||||||||||||||| |||||||| ||| ||||||||||||    
T  9354072 cgattagggaatacttaaatccctctttcatctttgttggaa 9354031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 60; Significance: 5e-25; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 60; E-Value: 5e-25
Query Start/End: Original strand, 7 - 70
Target Start/End: Complemental strand, 38385810 - 38385747
Alignment:
Q  7 cagttggcaaattgcaatgtttgcgtagaggaaaacaaacactgcaattgtgatcacaccattg 70  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  38385810 cagttggcaaattgcaatgtttgcgtagaggaaaacagacactgcaattgtgatcacaccattg 38385747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 700 - 935
Target Start/End: Original strand, 8713848 - 8714082
Alignment:
Q  700 taataaagtagcaagttaatcgtcaccatagagattctcgttcaactcgataattagcggaatctatttagtaaaacaaataaaataagagatttaaagt 799  Q
    ||||||||||| |||||||||||  ||| || |||| || ||||| ||  ||| |||  ||  |||||||| ||  ||||||||| |  |||||||||||    
T  8713848 taataaagtagtaagttaatcgtttccacagggattgtcattcaaatcagtaagtagaagagcctatttagaaatgcaaataaaagagaagatttaaagt 8713947  T
Q  800 ggtcacagggttttaattgtcctgacggatgcgagattaggtttttgtgattatgaagtgtaacggcgattagggaatacttgaatccctcattcgtctt 899  Q
     |   |||||||| |||||||||| |  |||| |||||||||||   |||||  ||||  ||||  |||||||||||| ||||||||||   ||| ||||    
T  8713948 tgatgcagggtttaaattgtcctgcccaatgcaagattaggtttggttgattcagaagattaacaacgattagggaatccttgaatcccatcttcatctt 8714047  T
Q  900 tgttggaaaattaaatttagaaatcattagtttata 935  Q
    |||||| ||||||||||| ||||||||| |||||||    
T  8714048 tgttgg-aaattaaattttgaaatcattcgtttata 8714082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 700 - 935
Target Start/End: Original strand, 9065735 - 9065969
Alignment:
Q  700 taataaagtagcaagttaatcgtcaccatagagattctcgttcaactcgataattagcggaatctatttagtaaaacaaataaaataagagatttaaagt 799  Q
    ||||||||||| |||||||||||  ||| || |||| || ||||| ||  ||| |||  ||  |||||||| ||  ||||||||| |  |||||||||||    
T  9065735 taataaagtagtaagttaatcgtttccacagggattgtcattcaaatcagtaagtagaagagcctatttagaaatgcaaataaaagagaagatttaaagt 9065834  T
Q  800 ggtcacagggttttaattgtcctgacggatgcgagattaggtttttgtgattatgaagtgtaacggcgattagggaatacttgaatccctcattcgtctt 899  Q
     |   |||||||| |||||||||| |  |||| |||||||||||   |||||  ||||  ||||  |||||||||||| ||||||||||   ||| ||||    
T  9065835 tgatgcagggtttaaattgtcctgcccaatgcaagattaggtttggttgattcagaagattaacaacgattagggaatccttgaatcccatcttcatctt 9065934  T
Q  900 tgttggaaaattaaatttagaaatcattagtttata 935  Q
    |||||| ||||||||||| ||||||||| |||||||    
T  9065935 tgttgg-aaattaaattttgaaatcattcgtttata 9065969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 854 - 935
Target Start/End: Original strand, 12145500 - 12145580
Alignment:
Q  854 gaagtgtaacggcgattagggaatacttgaatccctcattcgtctttgttggaaaattaaatttagaaatcattagtttata 935  Q
    |||||||||||||||||||||||| |||||||| | | | ||||| |||| ||||||||||| |||||||||||| ||||||    
T  12145500 gaagtgtaacggcgattagggaatccttgaatcacccctccgtctctgtt-gaaaattaaatatagaaatcattattttata 12145580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 860 - 907
Target Start/End: Original strand, 33913593 - 33913640
Alignment:
Q  860 taacggcgattagggaatacttgaatccctcattcgtctttgttggaa 907  Q
    |||||| ||||||||||| |||||||||||||||||||||||||||||    
T  33913593 taacggtgattagggaatccttgaatccctcattcgtctttgttggaa 33913640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 732 - 907
Target Start/End: Complemental strand, 11476063 - 11475891
Alignment:
Q  732 gattctcgttcaactcgataattagcggaatctatttagtaaaacaaataaaataagagatttaaagtggtcacagggttttaattgtcctgacggatgc 831  Q
    |||| |||||||||||| ||||||| ||||| |||| || |||  |||||||| || ||||| ||||||||   | ||||||||| |||||| |  ||||    
T  11476063 gattgtcgttcaactcggtaattagaggaatttatt-ag-aaagtaaataaaacaaaagattaaaagtggttgtaaggttttaatagtcctgcccaatgc 11475966  T
Q  832 gagattaggtttttgtgattatgaagtgtaacggcgattagggaatacttgaatccctcattcgtctttgttggaa 907  Q
     | |||||||||| ||||||   | || || |||||||||||||||  || ||||||||||  |||||||||||||    
T  11475965 aatattaggtttt-gtgattcaaaggtatagcggcgattagggaatcatttaatccctcatctgtctttgttggaa 11475891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 57; Significance: 3e-23; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 700 - 908
Target Start/End: Complemental strand, 13709258 - 13709051
Alignment:
Q  700 taataaagtagcaagttaatcgtcaccatagagattctcgttcaactcgataattagcggaatctatttagtaaaacaaataaaataagagatttaaagt 799  Q
    ||||||||||| |||| | ||||| |||||| |||  |||||||||| | ||||||| ||||| |||| |  ||| ||||||||  || ||||| | |||    
T  13709258 taataaagtagtaagtaattcgtctccatagggatcatcgttcaactgggtaattagtggaatttattcaa-aaagcaaataaagaaaaagattgagagt 13709160  T
Q  800 ggtcacagggttttaattgtcctgacggatgcgagattaggtttttgtgattatgaagtgtaacggcgattagggaatacttgaatccctcattcgtctt 899  Q
    |||  || ||||||||||||| ||    ||||||||||| ||||||||||||  ||||||||||| |||||||||||| ||||||||||   || |||||    
T  13709159 ggttgcatggttttaattgtcttgttcaatgcgagattatgtttttgtgattcggaagtgtaacgacgattagggaatccttgaatcccctctttgtctt 13709060  T
Q  900 tgttggaaa 908  Q
    |||||||||    
T  13709059 tgttggaaa 13709051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 832 - 964
Target Start/End: Original strand, 9455159 - 9455293
Alignment:
Q  832 gagattaggtttttgtgattatgaagtgtaacggcgattagggaatacttgaatccctcattcgtctttgttggaaaattaaatttagaaatcattagtt 931  Q
    ||||||||||||||||||||| ||| |||| || ||| || ||||| ||||||| || | |||||||||||| |||||||||||| || ||||||| |||    
T  9455159 gagattaggtttttgtgattaagaaatgtagcgacgactatggaatccttgaattcccccttcgtctttgtt-gaaaattaaattgagtaatcattggtt 9455257  T
Q  932 tata--ctgccttatgtttagatt-aataaagtaga 964  Q
    ||||   || |||||||||||||| |||||||||||    
T  9455258 tataacttgtcttatgtttagattaaataaagtaga 9455293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 805 - 907
Target Start/End: Original strand, 22334291 - 22334393
Alignment:
Q  805 cagggttttaattgtcctgacggatgcgagattaggtttttgtgattatgaagtgtaacggcgattagggaatacttgaatccctcattcgtctttgttg 904  Q
    ||||||||||||||| ||| |  |||||||||||||||||  |||||   ||| ||||||| ||||||||||| ||| |||||| | | |||||||||||    
T  22334291 cagggttttaattgttctgcccaatgcgagattaggttttgttgattcaaaagagtaacggtgattagggaatcctttaatcccccctccgtctttgttg 22334390  T
Q  905 gaa 907  Q
    |||    
T  22334391 gaa 22334393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 739 - 896
Target Start/End: Complemental strand, 11082730 - 11082575
Alignment:
Q  739 gttcaactcgataattagcggaatctatttagtaaaacaaataaaataagagatttaaagtggtcacagggttttaattgtcctgacggatgcgagatta 838  Q
    |||||||||||||||||||  ||| |||| || |||  |||||||| || ||||| | ||| ||  |||||||||||||||| |||   |||| ||||||    
T  11082730 gttcaactcgataattagcataatttatt-agaaaatgaaataaaagaaaagattaatagttgttgcagggttttaattgtcttgatcaatgcaagatta 11082632  T
Q  839 ggtttttgtgattatgaagtgtaacggcgattagggaatacttgaatccctcattcgt 896  Q
     ||||||||||||  ||||||| ||  |||||| ||||| |||||||||  |||||||    
T  11082631 tgtttttgtgattcagaagtgt-acaacgattatggaatccttgaatccgccattcgt 11082575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 698 - 784
Target Start/End: Original strand, 21536438 - 21536523
Alignment:
Q  698 aataataaagtagcaagttaatcgtcaccatagagattctcgttcaactcgataattagcggaatctatttagtaaaacaaataaaa 784  Q
    ||||||||||||| ||||||||| || |||  | |||| ||||| |||||| ||||||||||||  ||||||| |||| ||||||||    
T  21536438 aataataaagtaggaagttaatcttctccactgggattttcgttaaactcggtaattagcggaacttatttag-aaaaaaaataaaa 21536523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 858 - 935
Target Start/End: Complemental strand, 10924955 - 10924879
Alignment:
Q  858 tgtaacggcgattagggaatacttgaatccctcattcgtctttgttggaaaattaaatttagaaatcattagtttata 935  Q
    |||||||||||||||| ||| | |||||||| | |||||||| ||| |||||||||||  || ||| |||||||||||    
T  10924955 tgtaacggcgattaggaaatccgtgaatccccccttcgtcttcgtt-gaaaattaaatcgagtaattattagtttata 10924879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 42; Significance: 0.00000000000003; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 700 - 908
Target Start/End: Original strand, 13581851 - 13582055
Alignment:
Q  700 taataaagtagcaagttaatcgtcaccatagagattctcgttcaactcgataattagcggaatctatttagtaaaac--aaataaaataagagattt-aa 796  Q
    ||||||||||| ||||| |||||  ||| || | || |||||| ||||| ||||||| ||||| ||||||   ||||  |||||||| || ||| || ||    
T  13581851 taataaagtagtaagtttatcgtttccacagtgtttgtcgttcgactcggtaattagaggaatttattta---aaacgaaaataaaagaaaagaattgaa 13581947  T
Q  797 agtggtcacagggttttaattgtcctgacggatgcgagattaggtttttgtgattatgaagtgtaacggcgattagggaatacttgaatccctcattcgt 896  Q
    ||||||  || ||||| |||||||||  |  ||||||||||||||| ||||||||  ||||||||||| || |||| |||| |||||||||    |||||    
T  13581948 agtggttgcaaggtttcaattgtcctacccaatgcgagattaggttattgtgattcagaagtgtaacgacgtttagagaatccttgaatcc----ttcgt 13582043  T
Q  897 ctttgttggaaa 908  Q
    ||||||||||||    
T  13582044 ctttgttggaaa 13582055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 795 - 887
Target Start/End: Original strand, 24926781 - 24926873
Alignment:
Q  795 aaagtggtcacagggttttaattgtcctgacggatgcgagattaggtttttgtgattatgaagtgtaacggcgattagggaatacttgaatcc 887  Q
    ||||||||  ||||||||||||||||||| |  || | ||||||||||  |||||||  || |||||| |||||||||||||| |||||||||    
T  24926781 aaagtggttgcagggttttaattgtcctgcccaatacaagattaggttggtgtgattcagatgtgtaatggcgattagggaatccttgaatcc 24926873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 867 - 935
Target Start/End: Complemental strand, 30544779 - 30544713
Alignment:
Q  867 gattagggaatacttgaatccctcattcgtctttgttggaaaattaaatttagaaatcattagtttata 935  Q
    ||||||||||| || |||||| || ||||||||||||| |||||||||| |||||||||||||||||||    
T  30544779 gattagggaatcctcgaatcc-tccttcgtctttgttg-aaaattaaatatagaaatcattagtttata 30544713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 806 - 876
Target Start/End: Original strand, 28290339 - 28290408
Alignment:
Q  806 agggttttaattgtcctgacggatgcgagattaggtttttgtgattatgaagtgtaacggcgattagggaa 876  Q
    |||||||||||||||||| |  ||| |||||||| |||||||||||  ||||| |||||||||||||||||    
T  28290339 agggttttaattgtcctgcccaatgtgagattag-tttttgtgattcagaagtttaacggcgattagggaa 28290408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 810 - 907
Target Start/End: Original strand, 6887186 - 6887283
Alignment:
Q  810 ttttaattgtcctgacggatgcgagattaggtttttgtgattatgaagtgtaacggcgattagggaatacttgaatccctcattcgtctttgttggaa 907  Q
    |||||||||||||| |  |||||||||||| || |||||| |  || || || ||| ||||||||||| ||| |||||||||| | || |||||||||    
T  6887186 ttttaattgtcctgcccaatgcgagattagattgttgtgactcggacgtttaccggagattagggaatccttaaatccctcatccatcattgttggaa 6887283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 858 - 935
Target Start/End: Complemental strand, 18789942 - 18789866
Alignment:
Q  858 tgtaacggcgattagggaatacttgaatccctcattcgtctttgttggaaaattaaatttagaaatcattagtttata 935  Q
    |||||||||||||||| ||| | |||||||| | |||||||| ||| |||||||||||  || ||| |||||||||||    
T  18789942 tgtaacggcgattaggaaatccgtgaatccccccttcgtcttcgtt-gaaaattaaatcgagtaattattagtttata 18789866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 40; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 860 - 935
Target Start/End: Original strand, 227239 - 227313
Alignment:
Q  860 taacggcgattagggaatacttgaatccctcattcgtctttgttggaaaattaaatttagaaatcattagtttata 935  Q
    |||||||||||||||||| | ||||||||  ||| ||||||||| |||||||||||| |||||||||| |||||||    
T  227239 taacggcgattagggaatccatgaatccccgatttgtctttgtt-gaaaattaaattaagaaatcattcgtttata 227313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000006; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 647 - 843
Target Start/End: Complemental strand, 22512052 - 22511861
Alignment:
Q  647 gtgatggtgattttagtgaattaattagcaagtgcatcaaa-cttaccaagtaataataaagtagcaagttaatcgtcaccatagagattctcgttcaac 745  Q
    ||||||||||||||||||||   ||| ||||||||| |||| | || |||||||| |   | ||| |||||||||||| ||| |  |||| | |||||||    
T  22512052 gtgatggtgattttagtgaa---attggcaagtgcaccaaatcgtatcaagtaatca---attaggaagttaatcgtctccacaaggattgtagttcaac 22511959  T
Q  746 tcgataattagcggaatctatttagtaaaacaaataaaataagagatttaaagtggtcacagggttttaattgtcctgacggatgcgagattaggttt 843  Q
    | | |||||| |||||| ||||||| |||  |||||| | || ||| || |||||||  || |||||||| ||||||| || ||||||||||||||||    
T  22511958 ttggtaattaacggaatatatttagaaaagtaaataagagaaaagacttgaagtggttgcaaggttttaactgtcctgccgaatgcgagattaggttt 22511861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 648 - 935
Target Start/End: Original strand, 27916881 - 27917163
Alignment:
Q  648 tgatggtgattttagtgaattaattagcaagtgcatcaaacttaccaagtaataataaagtagcaagttaatcgtcaccatagagattctcgttcaactc 747  Q
    |||||||||||||||||||   |||  ||||||||||||| ||  |||  ||||||||| |||  |||||||||||  ||||  |||| | || ||||||    
T  27916881 tgatggtgattttagtgaa---attgacaagtgcatcaaattttacaa--aataataaaatagtgagttaatcgtcttcatatggattgttgtacaactc 27916975  T
Q  748 gataattagcggaatctatttagtaaaacaaataaa--ataagagatttaaagtggtcacagggttttaattgtcctgacggatgcgagattaggttttt 845  Q
     ||||||||  |||||||||||| ||| ||||||||  | || ||| ||  ||||||  |||||||||||||||  || |  ||||||||||||||||      
T  27916976 aataattagtagaatctatttagaaaagcaaataaaagagaaaaga-ttggagtggttgcagggttttaattgtattgcccaatgcgagattaggtttgg 27917074  T
Q  846 gtgattatgaagtgtaacggcgattagggaatacttgaatccctcattcgtctttgttggaaaattaaatttagaaatcattagtttata 935  Q
     |||||   |  | ||| ||| |||| ||||| ||||||||||   | |||||||||||| |||||||||| |||||| ||| |||||||    
T  27917075 ttgattcatatatttaatggcaattaaggaatccttgaatcccctctacgtctttgttgg-aaattaaattaagaaataattcgtttata 27917163  T

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Target: scaffold0804 (Bit Score: 33; Significance: 0.000000006; HSPs: 1)
Name: scaffold0804
Description:

Target: scaffold0804; HSP #1
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 860 - 935
Target Start/End: Complemental strand, 912 - 837
Alignment:
Q  860 taacggcgattagggaatacttgaatccctca-ttcgtctttgttggaaaattaaatttagaaatcattagtttata 935  Q
    |||| ||||||||||||| |||||||||| || |||||||||||||| |||||||||  | |||| |||||||||||    
T  912 taactgcgattagggaatccttgaatcccccacttcgtctttgttgg-aaattaaatacataaattattagtttata 837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0065 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0065
Description:

Target: scaffold0065; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 868 - 927
Target Start/End: Complemental strand, 13348 - 13291
Alignment:
Q  868 attagggaatacttgaatccctcattcgtctttgttggaaaattaaatttagaaatcatt 927  Q
    |||||||||| |||||||||||| ||| |||||||||| |||||||||| ||||||||||    
T  13348 attagggaatccttgaatccctc-ttcatctttgttgg-aaattaaattaagaaatcatt 13291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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