View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2931R-Insertion-2 (Length: 1050)

Name: NF2931R-Insertion-2
Description: NF2931R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2931R-Insertion-2
NF2931R-Insertion-2
[»] chr7 (15 HSPs)
chr7 (67-648)||(31771085-31771669)
chr7 (681-964)||(31771699-31771983)
chr7 (694-756)||(30812133-30812195)
chr7 (685-725)||(17248531-17248571)
chr7 (696-748)||(27517312-27517364)
chr7 (685-753)||(29363494-29363562)
chr7 (685-725)||(34083579-34083619)
chr7 (685-757)||(40252129-40252201)
chr7 (703-754)||(39771755-39771806)
chr7 (689-732)||(46104349-46104392)
chr7 (565-607)||(425964-426006)
chr7 (687-725)||(39907781-39907819)
chr7 (685-727)||(47795931-47795973)
chr7 (689-746)||(18350740-18350797)
chr7 (685-754)||(44821935-44822004)
[»] chr4 (18 HSPs)
chr4 (685-779)||(7694010-7694104)
chr4 (690-757)||(18628565-18628632)
chr4 (689-757)||(35064835-35064903)
chr4 (690-756)||(16200004-16200070)
chr4 (685-754)||(30581702-30581771)
chr4 (685-756)||(21157744-21157815)
chr4 (685-792)||(28300286-28300393)
chr4 (568-619)||(43824189-43824240)
chr4 (691-774)||(53943588-53943671)
chr4 (690-756)||(42866049-42866115)
chr4 (685-753)||(56480324-56480392)
chr4 (697-732)||(679243-679278)
chr4 (685-775)||(17884044-17884134)
chr4 (691-757)||(36048515-36048581)
chr4 (702-776)||(43824276-43824350)
chr4 (703-760)||(1028189-1028246)
chr4 (565-619)||(39178364-39178420)
chr4 (685-778)||(52746841-52746934)
[»] chr6 (12 HSPs)
chr6 (693-757)||(1275133-1275197)
chr6 (690-757)||(1401090-1401157)
chr6 (702-757)||(33787767-33787822)
chr6 (692-725)||(7446533-7446566)
chr6 (695-756)||(7945907-7945967)
chr6 (685-721)||(3785758-3785794)
chr6 (685-757)||(6654591-6654663)
chr6 (685-725)||(9093610-9093650)
chr6 (696-731)||(9604836-9604871)
chr6 (702-756)||(28088245-28088299)
chr6 (688-725)||(11784084-11784121)
chr6 (690-779)||(33887811-33887900)
[»] chr8 (16 HSPs)
chr8 (685-811)||(42215274-42215400)
chr8 (685-757)||(27028807-27028879)
chr8 (697-757)||(8062317-8062377)
chr8 (685-756)||(40157488-40157559)
chr8 (685-754)||(6509328-6509397)
chr8 (685-757)||(28769361-28769433)
chr8 (701-757)||(31862485-31862541)
chr8 (685-724)||(2482841-2482880)
chr8 (567-606)||(2840246-2840285)
chr8 (567-606)||(2844933-2844972)
chr8 (694-752)||(30627929-30627987)
chr8 (696-738)||(32841349-32841391)
chr8 (691-745)||(45099007-45099061)
chr8 (692-757)||(11795075-11795140)
chr8 (685-754)||(12361168-12361237)
chr8 (696-757)||(29168079-29168140)
[»] chr2 (15 HSPs)
chr2 (694-779)||(33931570-33931655)
chr2 (685-794)||(44438824-44438933)
chr2 (689-757)||(5133752-5133820)
chr2 (691-757)||(42419979-42420045)
chr2 (685-757)||(12464495-12464567)
chr2 (685-792)||(18962024-18962132)
chr2 (703-779)||(29316775-29316851)
chr2 (685-757)||(33319834-33319906)
chr2 (685-757)||(35486385-35486457)
chr2 (694-725)||(30990428-30990459)
chr2 (703-746)||(41170597-41170640)
chr2 (692-753)||(757438-757499)
chr2 (685-738)||(18066104-18066157)
chr2 (716-757)||(43065472-43065513)
chr2 (703-756)||(44238057-44238110)
[»] chr5 (19 HSPs)
chr5 (685-757)||(443911-443983)
chr5 (685-754)||(26390815-26390884)
chr5 (685-757)||(9106797-9106869)
chr5 (685-757)||(17368652-17368724)
chr5 (712-779)||(36638750-36638817)
chr5 (702-757)||(37588382-37588437)
chr5 (685-756)||(39105440-39105511)
chr5 (685-754)||(12425547-12425616)
chr5 (694-779)||(18543197-18543281)
chr5 (685-756)||(2568633-2568705)
chr5 (708-756)||(8481217-8481265)
chr5 (685-757)||(9202770-9202842)
chr5 (690-757)||(3977289-3977356)
chr5 (690-757)||(11104899-11104966)
chr5 (702-757)||(37526221-37526276)
chr5 (694-760)||(6587126-6587192)
chr5 (700-757)||(12494821-12494878)
chr5 (685-738)||(32372600-32372653)
chr5 (685-726)||(34736315-34736356)
[»] chr1 (21 HSPs)
chr1 (685-757)||(7472287-7472359)
chr1 (696-779)||(7136998-7137081)
chr1 (694-753)||(15515526-15515585)
chr1 (694-757)||(35590914-35590977)
chr1 (697-779)||(34290224-34290306)
chr1 (690-759)||(44422680-44422749)
chr1 (685-725)||(24915105-24915145)
chr1 (579-619)||(40201038-40201078)
chr1 (698-757)||(2777881-2777940)
chr1 (690-757)||(12564896-12564963)
chr1 (692-779)||(35017559-35017646)
chr1 (685-732)||(51160536-51160583)
chr1 (702-756)||(4622086-4622140)
chr1 (685-727)||(9572160-9572202)
chr1 (702-756)||(28482256-28482310)
chr1 (702-775)||(14629970-14630043)
chr1 (702-779)||(25479574-25479651)
chr1 (565-648)||(33527231-33527316)
chr1 (685-738)||(38018405-38018458)
chr1 (696-757)||(45975677-45975738)
chr1 (686-731)||(46423354-46423399)
[»] chr3 (11 HSPs)
chr3 (693-756)||(42733960-42734023)
chr3 (702-756)||(51510216-51510270)
chr3 (702-757)||(14548743-14548798)
chr3 (685-757)||(1816559-1816631)
chr3 (685-757)||(24887305-24887377)
chr3 (696-779)||(40665416-40665499)
chr3 (693-779)||(24785189-24785275)
chr3 (685-779)||(45432939-45433033)
chr3 (696-745)||(23952140-23952189)
chr3 (688-725)||(25447298-25447335)
chr3 (687-732)||(44061070-44061115)


Alignment Details
Target: chr7 (Bit Score: 468; Significance: 0; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 468; E-Value: 0
Query Start/End: Original strand, 67 - 648
Target Start/End: Original strand, 31771085 - 31771669
Alignment:
Q  67 agaggaatgagtaattctagataggagaagagcaactctcaaagagtaagagtatatacatgggcnnnnnnnaggcccaagattgtaaacccgtg-accc 165  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||       ||||||||||||||||||||||| ||||    
T  31771085 agaggaatgagtaattctagataggagaagagcaactctcaaagagtaagagcatatacatgggctttttttaggcccaagattgtaaacccgtggaccc 31771184  T
Q  166 gtatccaactctcggtttcaatattttcgcccgtttcacactctgccgcttcattctctcgccgtcgttgctaacttcttcttct---------ctgttt 256  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         ||||||    
T  31771185 gtatccaactctcggtttcaatattttcgcccgtttcacactctgccgcttcattctctcgccgtcgttgctaacttcttcttcttcttcttctctgttt 31771284  T
Q  257 tttgttgtaacggttttggttcgagacgnnnnnnntgattaagaggagattctttaaggttgatcacggtgatagagatggttctggtaattcttcttca 356  Q
    ||||||||||||       |||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31771285 tttgttgtaacg-------ttcgagacgaaaaaaatgattaagaggagattctttaaggttgatcacggtgatagagatggttctggtaattcttcttca 31771377  T
Q  357 tcctctgatgaagattatgataataatcaagttgcacaagtaagcgacgacaatgatgataatgatagtgatggtgaagttagctctgcatcttctggtt 456  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31771378 tcctctgatgaagattatgataataatcaagttgcacaagtaagcgacgacaatgatgataatgatagtgatggtgaagttagctctgcatcttctggtt 31771477  T
Q  457 cgttcattcgctttgttttttctcgaaaaagtttttatattgatgagtaatggattattagctctgataagttgcatgacattctcaattttcattaagg 556  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31771478 cgttcattcgctttgttttttctcgaaaaagtttttatattgatgagtaatggattattagctctgataagttgcatgacattctcaattttcattaagg 31771577  T
Q  557 cattgtcaggataaacaacttattttgcagcttttagcataagagcttattataagctatttcgtcaaaaaacataaaataaagtcaaactg 648  Q
    |||||||  |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  31771578 cattgtctagataaacaacttattttgcagcttttagcataagagcttattataatctatttcgtcaaaaaacataaaataaagtcaaactg 31771669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 262; E-Value: 1e-145
Query Start/End: Original strand, 681 - 964
Target Start/End: Original strand, 31771699 - 31771983
Alignment:
Q  681 aaacaagttaaactgtttttgtataagctataagctgttttcatatgttatcgtggagtgcttatggaaataagctgtaataaactcatgaacatgtcac 780  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31771699 aaacaagttaaactgtttttgtataagctataagctgttttcatatgttatcgtggagtgcttatggaaataagctgtaataaactcatgaacatgtcac 31771798  T
Q  781 atcctgttttcacaacttatcccaaacagtgcttatgtagctcaaataaggcaatcccaaaa-gcccttagttatagatactctccacattttggtcata 879  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  31771799 atcctgttttcacaacttatcccaaacagtgcttatgtagctcaaataaggcaatcccaaaaggcccttagttatagatactctccacattttggtcata 31771898  T
Q  880 gtttaaaatttggattaaccttctagctattggaagcttatc-agtaaaataagtttatagttttgtcatttatgaaagagtattt 964  Q
    |||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  31771899 gtttaaaatttggattaa-cttctagctattggaagcttatcaagtaaaataagtttatagttttgtcatttatgaaagagtattt 31771983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 694 - 756
Target Start/End: Original strand, 30812133 - 30812195
Alignment:
Q  694 tgtttttgtataagctataagctgttttcatatgttatcgtggagtgcttatggaaataagct 756  Q
    |||||| ||||||||||||||||||||||||  | |||| ||||| |||||||||||||||||    
T  30812133 tgttttcgtataagctataagctgttttcattagctatcatggagagcttatggaaataagct 30812195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 685 - 725
Target Start/End: Original strand, 17248531 - 17248571
Alignment:
Q  685 aagttaaactgtttttgtataagctataagctgttttcata 725  Q
    |||||||| ||||||||||||||||||||||| ||||||||    
T  17248531 aagttaaattgtttttgtataagctataagctcttttcata 17248571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 696 - 748
Target Start/End: Complemental strand, 27517364 - 27517312
Alignment:
Q  696 tttttgtataagctataagctgttttcatatgttatcgtggagtgcttatgga 748  Q
    ||||||||||||||| || ||||||||||| |||||| ||||| |||||||||    
T  27517364 tttttgtataagctacaaactgttttcataagttatcctggagagcttatgga 27517312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 685 - 753
Target Start/End: Original strand, 29363494 - 29363562
Alignment:
Q  685 aagttaaactgtttttgtataagctataagctgttttcatatgttatcgtggagtgcttatggaaataa 753  Q
    |||| ||||||||||  ||| || ||||||||||| ||||| |||||| ||||| ||||||||||||||    
T  29363494 aagtcaaactgttttcatattagttataagctgttatcataagttatcctggagagcttatggaaataa 29363562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 685 - 725
Target Start/End: Complemental strand, 34083619 - 34083579
Alignment:
Q  685 aagttaaactgtttttgtataagctataagctgttttcata 725  Q
    |||||||| ||||| ||||||||||||||||||||||||||    
T  34083619 aagttaaattgtttgtgtataagctataagctgttttcata 34083579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 685 - 757
Target Start/End: Complemental strand, 40252201 - 40252129
Alignment:
Q  685 aagttaaactgtttttgtataagctataagctgttttcatatgttatcgtggagtgcttatggaaataagctg 757  Q
    ||||||||  ||||||||||| | |||||||| |||||||| |||||| |||||  |||||| ||||||||||    
T  40252201 aagttaaatcgtttttgtatatgttataagctcttttcataagttatcttggagaacttatgaaaataagctg 40252129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 703 - 754
Target Start/End: Original strand, 39771755 - 39771806
Alignment:
Q  703 ataagctataagctgttttcatatgttatcgtggagtgcttatggaaataag 754  Q
    |||||||||||| |||||||||| |||||| | ||||||| |||||||||||    
T  39771755 ataagctataagttgttttcataggttatcatagagtgctaatggaaataag 39771806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 689 - 732
Target Start/End: Complemental strand, 46104392 - 46104349
Alignment:
Q  689 taaactgtttttgtataagctataagctgttttcatatgttatc 732  Q
    ||||||||||| ||||||||||||| ||||||||||| ||||||    
T  46104392 taaactgttttcgtataagctataaactgttttcataagttatc 46104349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 565 - 607
Target Start/End: Complemental strand, 426006 - 425964
Alignment:
Q  565 ggataaacaacttattttgcagcttttagcataagagcttatt 607  Q
    ||||||| ||||||||||||||||| ||||||||| |||||||    
T  426006 ggataaataacttattttgcagcttatagcataagcgcttatt 425964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 687 - 725
Target Start/End: Original strand, 39907781 - 39907819
Alignment:
Q  687 gttaaactgtttttgtataagctataagctgttttcata 725  Q
    |||||| |||||||||||||||||||| |||||||||||    
T  39907781 gttaaattgtttttgtataagctataaactgttttcata 39907819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 685 - 727
Target Start/End: Original strand, 47795931 - 47795973
Alignment:
Q  685 aagttaaactgtttttgtataagctataagctgttttcatatg 727  Q
    |||||||| ||||||| |||||||||||| |||||||||||||    
T  47795931 aagttaaattgtttttatataagctataaactgttttcatatg 47795973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 689 - 746
Target Start/End: Complemental strand, 18350797 - 18350740
Alignment:
Q  689 taaactgtttttgtataagctataagctgttttcatatgttatcgtggagtgcttatg 746  Q
    |||| |||||| ||||||| ||||||||||||||||| | |||| ||||| |||||||    
T  18350797 taaattgttttcgtataagttataagctgttttcataagctatcatggagagcttatg 18350740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 685 - 754
Target Start/End: Original strand, 44821935 - 44822004
Alignment:
Q  685 aagttaaactgtttttgtataagctataagctgttttcatatgttatcgtggagtgcttatggaaataag 754  Q
    |||| ||| |||||||||||||| ||||||||||||||||| | |||  |||||  |||||| |||||||    
T  44821935 aagtcaaattgtttttgtataagttataagctgttttcataagctattctggagaacttatgaaaataag 44822004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 59; Significance: 2e-24; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 685 - 779
Target Start/End: Complemental strand, 7694104 - 7694010
Alignment:
Q  685 aagttaaactgtttttgtataagctataagctgttttcatatgttatcgtggagtgcttatggaaataagctgtaataaactcatgaacatgtca 779  Q
    |||| |||||||||||||||||||||||||||||||||||| |||||| ||||| | |||||||||||||||| ||  |||| ||||||||||||    
T  7694104 aagtcaaactgtttttgtataagctataagctgttttcataagttatcctggagagtttatggaaataagctgaaaacaacttatgaacatgtca 7694010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 690 - 757
Target Start/End: Complemental strand, 18628632 - 18628565
Alignment:
Q  690 aaactgtttttgtataagctataagctgttttcatatgttatcgtggagtgcttatggaaataagctg 757  Q
    ||||||||||| |||||| ||||| ||||||||||| |||||| ||||| ||||||||||||||||||    
T  18628632 aaactgtttttatataagttataaactgttttcataagttatcttggagagcttatggaaataagctg 18628565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 689 - 757
Target Start/End: Original strand, 35064835 - 35064903
Alignment:
Q  689 taaactgtttttgtataagctataagctgttttcatatgttatcgtggagtgcttatggaaataagctg 757  Q
    ||||||||||||||||| |||||| |||||||||||| | |||| ||||| | ||||||||||||||||    
T  35064835 taaactgtttttgtataggctatatgctgttttcataagatatcatggagagtttatggaaataagctg 35064903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 690 - 756
Target Start/End: Complemental strand, 16200070 - 16200004
Alignment:
Q  690 aaactgtttttgtataagctataagctgttttcatatgttatcgtggagtgcttatggaaataagct 756  Q
    |||||||||||||||| ||||||||||||||||||| | |||| |||||  |||||| |||||||||    
T  16200070 aaactgtttttgtatatgctataagctgttttcataagctatcttggaggacttatgaaaataagct 16200004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 685 - 754
Target Start/End: Complemental strand, 30581771 - 30581702
Alignment:
Q  685 aagttaaactgtttttgtataagctataagctgttttcatatgttatcgtggagtgcttatggaaataag 754  Q
    |||| ||||| |||| ||||||||||||||||||||| ||| |||||| ||||| | |||||||||||||    
T  30581771 aagtcaaactattttcgtataagctataagctgttttaataagttatcttggagagtttatggaaataag 30581702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 685 - 756
Target Start/End: Original strand, 21157744 - 21157815
Alignment:
Q  685 aagttaaactgtttttgtataagctataagctgttttcatatgttatcgtggagtgcttatggaaataagct 756  Q
    |||| ||||||||||  | ||||||||||| |||||||||||| |||| || || |||||||||||||||||    
T  21157744 aagtcaaactgttttcatgtaagctataagatgttttcatatgctatcctgaagagcttatggaaataagct 21157815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 685 - 792
Target Start/End: Complemental strand, 28300393 - 28300286
Alignment:
Q  685 aagttaaactgtttttgtataagctataagctgttttcatatgttatcgtggagtgcttatggaaataagctgtaataaactcatgaacatgtcacatcc 784  Q
    |||||||| |||||||||||||||||||| || |||||||| | |||| || || ||||||| ||||||| || ||  |||| | |||||||||| |  |    
T  28300393 aagttaaattgtttttgtataagctataaactattttcataggctatcttgaagagcttatgaaaataagttgaaaacaacttaagaacatgtcataggc 28300294  T
Q  785 tgttttca 792  Q
    ||||||||    
T  28300293 tgttttca 28300286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 568 - 619
Target Start/End: Original strand, 43824189 - 43824240
Alignment:
Q  568 taaacaacttattttgcagcttttagcataagagcttattataagctatttc 619  Q
    ||||||||||| |||||||||| ||||||||  |||||||||||||||||||    
T  43824189 taaacaacttaatttgcagcttatagcataaccgcttattataagctatttc 43824240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 691 - 774
Target Start/End: Original strand, 53943588 - 53943671
Alignment:
Q  691 aactgtttttgtataagctataagctgttttcatatgttatcgtggagtgcttatggaaataagctgtaataaactcatgaaca 774  Q
    |||||||||  ||||| ||||||| ||||| |||| ||| || ||||| |||||||||||||||||| ||| || |||||||||    
T  53943588 aactgttttcatataaactataagttgtttacataagttgtcatggagagcttatggaaataagctgaaatcaagtcatgaaca 53943671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 690 - 756
Target Start/End: Original strand, 42866049 - 42866115
Alignment:
Q  690 aaactgtttttgtataagctataagctgttttcatatgttatcgtggagtgcttatggaaataagct 756  Q
    ||||||||||| ||||||||||||| |||||||||| | |||| | ||| |||||||||| ||||||    
T  42866049 aaactgtttttatataagctataagttgttttcataagctatccttgagagcttatggaagtaagct 42866115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 685 - 753
Target Start/End: Original strand, 56480324 - 56480392
Alignment:
Q  685 aagttaaactgtttttgtataagctataagctgttttcatatgttatcgtggagtgcttatggaaataa 753  Q
    |||||||| ||||| |||||||| |||||||||||||||||   |||| ||||| ||||||| ||||||    
T  56480324 aagttaaattgtttatgtataagttataagctgttttcataaactatcttggagagcttatgaaaataa 56480392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 697 - 732
Target Start/End: Original strand, 679243 - 679278
Alignment:
Q  697 ttttgtataagctataagctgttttcatatgttatc 732  Q
    ||||||||||||||||||||||||||||| ||||||    
T  679243 ttttgtataagctataagctgttttcataagttatc 679278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 685 - 775
Target Start/End: Original strand, 17884044 - 17884134
Alignment:
Q  685 aagttaaactgtttttgtataagctataagctgttttcatatgttatcgtggagtgcttatggaaataagctgtaataaactcatgaacat 775  Q
    |||||||| |||||||||||||| ||| || |||||||||| | |||  ||||| ||||||| |||| ||||| ||  |||| ||||||||    
T  17884044 aagttaaattgtttttgtataagttatcagttgttttcataagctatattggagagcttatgaaaattagctgaaaacaacttatgaacat 17884134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 691 - 757
Target Start/End: Original strand, 36048515 - 36048581
Alignment:
Q  691 aactgtttttgtataagctataagctgttttcatatgttatcgtggagtgcttatggaaataagctg 757  Q
    |||||||||  ||||||||||||||| |||||| | | |||| | ||| ||||||||||||||||||    
T  36048515 aactgttttcatataagctataagctattttcaaaagctatcttagagagcttatggaaataagctg 36048581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 702 - 776
Target Start/End: Original strand, 43824276 - 43824350
Alignment:
Q  702 tataagctataagctgttttcatatgttatcgtggagtgcttatggaaataagctgtaataaactcatgaacatg 776  Q
    |||||| |||||||| ||||| || |||||| ||||  |||||||||||||||||| ||  |||| |||||||||    
T  43824276 tataagttataagcttttttcgtaagttatcctggaaagcttatggaaataagctgaaaacaacttatgaacatg 43824350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 703 - 760
Target Start/End: Complemental strand, 1028246 - 1028189
Alignment:
Q  703 ataagctataagctgttttcatatgttatcgtggagtgcttatggaaataagctgtaa 760  Q
    ||||||||||||||| ||||||| | |||| ||||| ||||| ||||||||| |||||    
T  1028246 ataagctataagctgctttcataagatatcctggagagcttaaggaaataagttgtaa 1028189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 565 - 619
Target Start/End: Complemental strand, 39178420 - 39178364
Alignment:
Q  565 ggataaacaacttattttgcagcttttagcataagagcttat--tataagctatttc 619  Q
    |||||||||||||||||| |||||| ||| ||||| ||||||  |||||||||||||    
T  39178420 ggataaacaacttattttacagcttatagtataagtgcttatcatataagctatttc 39178364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 685 - 778
Target Start/End: Complemental strand, 52746934 - 52746841
Alignment:
Q  685 aagttaaactgtttttgtataagctataagctgttttcatatgttatcgtggagtgcttatggaaataagctgtaataaactcatgaacatgtc 778  Q
    |||||||| ||||||||| ||||| |||||||||||||||| | |||| || |  ||||||| |||| ||||| ||  | || |||||||||||    
T  52746934 aagttaaattgtttttgtgtaagccataagctgttttcataagctatcttgtaaggcttatgaaaatcagctgaaaacagcttatgaacatgtc 52746841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 49; Significance: 2e-18; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 693 - 757
Target Start/End: Original strand, 1275133 - 1275197
Alignment:
Q  693 ctgtttttgtataagctataagctgttttcatatgttatcgtggagtgcttatggaaataagctg 757  Q
    |||||||  ||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||    
T  1275133 ctgttttcatataagctataagctgttttcatatgttatcctggagagcttatggaaataagctg 1275197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 690 - 757
Target Start/End: Original strand, 1401090 - 1401157
Alignment:
Q  690 aaactgtttttgtataagctataagctgttttcatatgttatcgtggagtgcttatggaaataagctg 757  Q
    |||||| ||| ||||||||||||||||||||||||| | |||| ||||| ||||||||| ||||||||    
T  1401090 aaactgctttagtataagctataagctgttttcataagctatcatggagagcttatggagataagctg 1401157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 702 - 757
Target Start/End: Complemental strand, 33787822 - 33787767
Alignment:
Q  702 tataagctataagctgttttcatatgttatcgtggagtgcttatggaaataagctg 757  Q
    |||||| ||||||||||||||||| |||||| ||||| ||||||||||||| ||||    
T  33787822 tataagttataagctgttttcataagttatcttggagagcttatggaaataggctg 33787767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 692 - 725
Target Start/End: Complemental strand, 7446566 - 7446533
Alignment:
Q  692 actgtttttgtataagctataagctgttttcata 725  Q
    ||||||||||||||||||||||||||||||||||    
T  7446566 actgtttttgtataagctataagctgttttcata 7446533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 695 - 756
Target Start/End: Complemental strand, 7945967 - 7945907
Alignment:
Q  695 gtttttgtataagctataagctgttttcatatgttatcgtggagtgcttatggaaataagct 756  Q
    |||||||||||| |||||| ||||||||||| | |||| ||||| |||||||||||||||||    
T  7945967 gtttttgtataatctataacctgttttcata-gctatcctggagagcttatggaaataagct 7945907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 685 - 721
Target Start/End: Complemental strand, 3785794 - 3785758
Alignment:
Q  685 aagttaaactgtttttgtataagctataagctgtttt 721  Q
    ||||||||||||||| |||||||||||||||||||||    
T  3785794 aagttaaactgttttcgtataagctataagctgtttt 3785758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 685 - 757
Target Start/End: Original strand, 6654591 - 6654663
Alignment:
Q  685 aagttaaactgtttttgtataagctataagctgttttcatatgttatcgtggagtgcttatggaaataagctg 757  Q
    |||| ||| ||||||||| ||| || ||||||||||| ||||| |||| ||||| |||||||||| |||||||    
T  6654591 aagtcaaattgtttttgtttaaactttaagctgttttaatatgctatcttggagagcttatggaagtaagctg 6654663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 685 - 725
Target Start/End: Complemental strand, 9093650 - 9093610
Alignment:
Q  685 aagttaaactgtttttgtataagctataagctgttttcata 725  Q
    |||||||| |||||| |||||||||||||||||||||||||    
T  9093650 aagttaaattgttttcgtataagctataagctgttttcata 9093610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 696 - 731
Target Start/End: Original strand, 9604836 - 9604871
Alignment:
Q  696 tttttgtataagctataagctgttttcatatgttat 731  Q
    |||||||||||||||||||||||||||||| |||||    
T  9604836 tttttgtataagctataagctgttttcataagttat 9604871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 702 - 756
Target Start/End: Complemental strand, 28088299 - 28088245
Alignment:
Q  702 tataagctataagctgttttcatatgttatcgtggagtgcttatggaaataagct 756  Q
    |||||||||||| ||||||||||| | |||| ||||| ||| |||||||||||||    
T  28088299 tataagctataaactgttttcataagctatcatggagagctcatggaaataagct 28088245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 688 - 725
Target Start/End: Complemental strand, 11784121 - 11784084
Alignment:
Q  688 ttaaactgtttttgtataagctataagctgttttcata 725  Q
    ||||| |||||||||||| |||||||||||||||||||    
T  11784121 ttaaattgtttttgtatatgctataagctgttttcata 11784084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 690 - 779
Target Start/End: Original strand, 33887811 - 33887900
Alignment:
Q  690 aaactgtttttgtataagctataagctgttttcatatgttatcgtggagtgcttatggaaataagctgtaataaactcatgaacatgtca 779  Q
    |||||||||| |||||| | |||| ||||||||||| | |||| || | |||||||||||||||| || ||  ||||  |||||||||||    
T  33887811 aaactgttttagtataatcaataaactgttttcataagctatcctgaaatgcttatggaaataagttgaaaacaacttgtgaacatgtca 33887900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000007; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 685 - 811
Target Start/End: Complemental strand, 42215400 - 42215274
Alignment:
Q  685 aagttaaactgtttttgtataagctataagctgttttcatatgttatcgtggagtgcttatggaaataagctgtaataaactcatgaacatgtcacatcc 784  Q
    |||| ||||||||||||||||| |||||| || |||||||||| |||| ||||| ||||||| |||||||||| ||  | || ||||||| |||| |  |    
T  42215400 aagtcaaactgtttttgtataatctataacctattttcatatgctatcctggagagcttatgtaaataagctgaaaacagcttatgaacaagtcataagc 42215301  T
Q  785 tgttttcacaacttatcccaaacagtg 811  Q
    ||||||||  | || ||||||||||||    
T  42215300 tgttttcattagttctcccaaacagtg 42215274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 685 - 757
Target Start/End: Original strand, 27028807 - 27028879
Alignment:
Q  685 aagttaaactgtttttgtataagctataagctgttttcatatgttatcgtggagtgcttatggaaataagctg 757  Q
    |||||||| ||||| |||||| ||||||||||||||||||| | |||| ||||| ||||||| ||||||||||    
T  27028807 aagttaaattgtttgtgtatatgctataagctgttttcataagctatcttggagagcttatgaaaataagctg 27028879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 697 - 757
Target Start/End: Original strand, 8062317 - 8062377
Alignment:
Q  697 ttttgtataagctataagctgttttcatatgttatcgtggagtgcttatggaaataagctg 757  Q
    ||||||||||||||||||||||||||||| | |||| | ||| | ||||||||||||||||    
T  8062317 ttttgtataagctataagctgttttcataagctatcttagagagattatggaaataagctg 8062377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 685 - 756
Target Start/End: Original strand, 40157488 - 40157559
Alignment:
Q  685 aagttaaactgtttttgtataagctataagctgttttcatatgttatcgtggagtgcttatggaaataagct 756  Q
    |||||||||||||||  ||||||||||||| ||||||||||||||||   |||| |||| || |||||||||    
T  40157488 aagttaaactgttttaatataagctataagatgttttcatatgttattccggagagcttgtgaaaataagct 40157559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 685 - 754
Target Start/End: Complemental strand, 6509397 - 6509328
Alignment:
Q  685 aagttaaactgtttttgtataagctataagctgttttcatatgttatcgtggagtgcttatggaaataag 754  Q
    |||| ||| ||| ||| |||||||||||||||||||||||| | |||| ||||| |||||| ||||||||    
T  6509397 aagtcaaattgtatttatataagctataagctgttttcataagctatcctggagagcttattgaaataag 6509328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 685 - 757
Target Start/End: Complemental strand, 28769433 - 28769361
Alignment:
Q  685 aagttaaactgtttttgtataagctataagctgttttcatatgttatcgtggagtgcttatggaaataagctg 757  Q
    |||| ||||| ||||  |||||||||||||||||||||||| | |||  ||||| | ||||||||||||||||    
T  28769433 aagtcaaactattttcttataagctataagctgttttcataagctattttggagagtttatggaaataagctg 28769361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 701 - 757
Target Start/End: Original strand, 31862485 - 31862541
Alignment:
Q  701 gtataagctataagctgttttcatatgttatcgtggagtgcttatggaaataagctg 757  Q
    |||||||||||||| |||||||||| |||||| | ||| ||||||| ||||||||||    
T  31862485 gtataagctataagatgttttcataagttatcctagagagcttatgaaaataagctg 31862541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 685 - 724
Target Start/End: Original strand, 2482841 - 2482880
Alignment:
Q  685 aagttaaactgtttttgtataagctataagctgttttcat 724  Q
    |||| ||| |||||||||||||||||||||||||||||||    
T  2482841 aagtcaaaatgtttttgtataagctataagctgttttcat 2482880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 567 - 606
Target Start/End: Original strand, 2840246 - 2840285
Alignment:
Q  567 ataaacaacttattttgcagcttttagcataagagcttat 606  Q
    ||||||||||||||||||||||| ||||||||| ||||||    
T  2840246 ataaacaacttattttgcagcttatagcataagtgcttat 2840285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 567 - 606
Target Start/End: Original strand, 2844933 - 2844972
Alignment:
Q  567 ataaacaacttattttgcagcttttagcataagagcttat 606  Q
    ||||||||||||||||||||||| ||||||||| ||||||    
T  2844933 ataaacaacttattttgcagcttatagcataagtgcttat 2844972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 694 - 752
Target Start/End: Complemental strand, 30627987 - 30627929
Alignment:
Q  694 tgtttttgtataagctataagctgttttcatatgttatcgtggagtgcttatggaaata 752  Q
    ||||| ||| ||||||||||| |||||||||| |||||| | ||| |||||||||||||    
T  30627987 tgtttatgtgtaagctataagttgttttcataagttatcttagagagcttatggaaata 30627929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 696 - 738
Target Start/End: Complemental strand, 32841391 - 32841349
Alignment:
Q  696 tttttgtataagctataagctgttttcatatgttatcgtggag 738  Q
    |||||||||||||||||||||||||||||| | |||| |||||    
T  32841391 tttttgtataagctataagctgttttcataagctatcttggag 32841349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 691 - 745
Target Start/End: Complemental strand, 45099061 - 45099007
Alignment:
Q  691 aactgtttttgtataagctataagctgttttcatatgttatcgtggagtgcttat 745  Q
    ||||||||||||||||| |||||| |||||||||| ||| || ||||| ||||||    
T  45099061 aactgtttttgtataagttataagttgttttcataggttttcctggagagcttat 45099007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 692 - 757
Target Start/End: Original strand, 11795075 - 11795140
Alignment:
Q  692 actgtttttgtataagctataagctgttttcatatgttatcgtggagtgcttatggaaataagctg 757  Q
    ||||||||  |||||| ||||||||| ||||||| | |||  ||||| ||||||||||||||||||    
T  11795075 actgttttcatataagttataagctgatttcataagctattatggagagcttatggaaataagctg 11795140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 685 - 754
Target Start/End: Original strand, 12361168 - 12361237
Alignment:
Q  685 aagttaaactgtttttgtataagctataagctgttttcatatgttatcgtggagtgcttatggaaataag 754  Q
    |||| ||| ||||||  |||||||||||||||||||||||| |||||   |||| ||| |||||||||||    
T  12361168 aagtcaaattgttttcatataagctataagctgttttcataagttattcaggagagctaatggaaataag 12361237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 696 - 757
Target Start/End: Complemental strand, 29168140 - 29168079
Alignment:
Q  696 tttttgtataagctataagctgttttcatatgttatcgtggagtgcttatggaaataagctg 757  Q
    |||||||||| |||||||||||||||| |  | |||| |||||  |||||||||||||||||    
T  29168140 tttttgtatatgctataagctgttttcctgagctatcttggagaacttatggaaataagctg 29168079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.00000000000003; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 694 - 779
Target Start/End: Complemental strand, 33931655 - 33931570
Alignment:
Q  694 tgtttttgtataagctataagctgttttcatatgttatcgtggagtgcttatggaaataagctgtaataaactcatgaacatgtca 779  Q
    |||||||||||||||||||||||||||||||| | |||  |||||   |  ||||||||||||| |||||||| ||||||||||||    
T  33931655 tgtttttgtataagctataagctgttttcataagctattttggagaaatagtggaaataagctgaaataaacttatgaacatgtca 33931570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 685 - 794
Target Start/End: Complemental strand, 44438933 - 44438824
Alignment:
Q  685 aagttaaactgtttttgtataagctataagctgttttcatatgttatcgtggagtgcttatggaaataagctgtaataaactcatgaacatgtcacatcc 784  Q
    |||| |||||||||||||| |||| ||||||||| |||||| |||||| |||||  ||| ||||||||||||| ||  |  | |||||||||||| |  |    
T  44438933 aagtcaaactgtttttgtacaagccataagctgtcttcataagttatcctggagatcttgtggaaataagctgaaaacaggttatgaacatgtcataagc 44438834  T
Q  785 tgttttcaca 794  Q
    ||||||||||    
T  44438833 tgttttcaca 44438824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 689 - 757
Target Start/End: Original strand, 5133752 - 5133820
Alignment:
Q  689 taaactgtttttgtataagctataagctgttttcatatgttatcgtggagtgcttatggaaataagctg 757  Q
    |||||||||||| |||||| ||||||||||||||| | ||||||   ||| ||||||||||||||||||    
T  5133752 taaactgtttttatataagatataagctgttttcaaaagttatctaagagagcttatggaaataagctg 5133820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 691 - 757
Target Start/End: Original strand, 42419979 - 42420045
Alignment:
Q  691 aactgtttttgtataagctataagctgttttcatatgttatcgtggagtgcttatggaaataagctg 757  Q
    |||||||||||||||| ||||||||| |||||||| | |||| ||||  |||||||||||| |||||    
T  42419979 aactgtttttgtataatctataagctattttcataagctatcctggatagcttatggaaatgagctg 42420045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 685 - 757
Target Start/End: Complemental strand, 12464567 - 12464495
Alignment:
Q  685 aagttaaactgtttttgtataagctataagctgttttcatatgttatcgtggagtgcttatggaaataagctg 757  Q
    |||||||| |||||||||||| |||||||||| |||||||| | |||| |||||  ||| || ||||||||||    
T  12464567 aagttaaattgtttttgtatatgctataagctattttcataagctatcttggagaacttgtgaaaataagctg 12464495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 685 - 792
Target Start/End: Complemental strand, 18962132 - 18962024
Alignment:
Q  685 aagttaaactgtttttgtataagctataagctgttttcatatgttatcgtggagtgcttatggaaat-aagctgtaataaactcatgaacatgtcacatc 783  Q
    |||||||||||||||  |||||||||||| || |||||||| | |||| ||||| |  ||||||||| |||||| ||  | | ||||||||||||| ||     
T  18962132 aagttaaactgttttcatataagctataaactattttcataagctatcatggagagactatggaaataaagctgaaaacagcacatgaacatgtcatatg 18962033  T
Q  784 ctgttttca 792  Q
    |||||||||    
T  18962032 ctgttttca 18962024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 703 - 779
Target Start/End: Complemental strand, 29316851 - 29316775
Alignment:
Q  703 ataagctataagctgttttcatatgttatcgtggagtgcttatggaaataagctgtaataaactcatgaacatgtca 779  Q
    |||| |||||||||||||||||  | |||| |||||  ||||||||||||||||| ||  |||| ||||||||||||    
T  29316851 ataatctataagctgttttcatcagctatcttggagaacttatggaaataagctgaaaagaacttatgaacatgtca 29316775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 685 - 757
Target Start/End: Complemental strand, 33319906 - 33319834
Alignment:
Q  685 aagttaaactgtttttgtataagctataagctgttttcatatgttatcgtggagtgcttatggaaataagctg 757  Q
    |||||||||||||||||||||  |||||| |||||||||||   |||| |||||  |||||| ||||||||||    
T  33319906 aagttaaactgtttttgtatatactataaactgttttcataaactatcttggagaacttatgaaaataagctg 33319834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 685 - 757
Target Start/End: Complemental strand, 35486457 - 35486385
Alignment:
Q  685 aagttaaactgtttttgtataagctataagctgttttcatatgttatcgtggagtgcttatggaaataagctg 757  Q
    |||| ||||||||||||||||| |||||||||||||||  | | |||| ||||| | ||||||||||| ||||    
T  35486457 aagtcaaactgtttttgtataatctataagctgttttcgcaagctatcctggagaggttatggaaatacgctg 35486385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 694 - 725
Target Start/End: Complemental strand, 30990459 - 30990428
Alignment:
Q  694 tgtttttgtataagctataagctgttttcata 725  Q
    ||||||||||||||||||||||||||||||||    
T  30990459 tgtttttgtataagctataagctgttttcata 30990428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 703 - 746
Target Start/End: Original strand, 41170597 - 41170640
Alignment:
Q  703 ataagctataagctgttttcatatgttatcgtggagtgcttatg 746  Q
    ||||||||||||||||||||||||| |||| ||||| |||||||    
T  41170597 ataagctataagctgttttcatatgctatcatggagagcttatg 41170640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 692 - 753
Target Start/End: Original strand, 757438 - 757499
Alignment:
Q  692 actgtttttgtataagctataagctgttttcatatgttatcgtggagtgcttatggaaataa 753  Q
    ||||| ||| ||||||||||||| |||||||| |  ||||| ||||| ||||||||||||||    
T  757438 actgtgtttatataagctataagatgttttcaaaaattatcctggagagcttatggaaataa 757499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 685 - 738
Target Start/End: Original strand, 18066104 - 18066157
Alignment:
Q  685 aagttaaactgtttttgtataagctataagctgttttcatatgttatcgtggag 738  Q
    |||||||| ||||||  |||||||||||||||||||||||| | |||| |||||    
T  18066104 aagttaaattgttttcatataagctataagctgttttcataagctatcttggag 18066157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 716 - 757
Target Start/End: Complemental strand, 43065513 - 43065472
Alignment:
Q  716 tgttttcatatgttatcgtggagtgcttatggaaataagctg 757  Q
    |||||||||| |||||||||||| |||||| |||||||||||    
T  43065513 tgttttcataagttatcgtggagagcttattgaaataagctg 43065472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 703 - 756
Target Start/End: Complemental strand, 44238110 - 44238057
Alignment:
Q  703 ataagctataagctgttttcatatgttatcgtggagtgcttatggaaataagct 756  Q
    |||||||||||| |||||||| | |||||| ||||| | |||||||||||||||    
T  44238110 ataagctataagttgttttcagaagttatcatggagagtttatggaaataagct 44238057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 41; Significance: 0.0000000000001; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 685 - 757
Target Start/End: Original strand, 443911 - 443983
Alignment:
Q  685 aagttaaactgtttttgtataagctataagctgttttcatatgttatcgtggagtgcttatggaaataagctg 757  Q
    |||| |||| |||||||||||||||||||| |||||||||| | |||| |||||||||| |||| ||||||||    
T  443911 aagtcaaacagtttttgtataagctataagatgttttcataagctatcttggagtgcttttggagataagctg 443983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 685 - 754
Target Start/End: Complemental strand, 26390884 - 26390815
Alignment:
Q  685 aagttaaactgtttttgtataagctataagctgttttcatatgttatcgtggagtgcttatggaaataag 754  Q
    |||||||||||||||  ||||||||||||| || |||| || |||||| ||||| |||||||||||||||    
T  26390884 aagttaaactgttttcatataagctataagatggtttcctaagttatcctggagagcttatggaaataag 26390815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 685 - 757
Target Start/End: Original strand, 9106797 - 9106869
Alignment:
Q  685 aagttaaactgtttttgtataagctataagctgttttcatatgttatcgtggagtgcttatggaaataagctg 757  Q
    |||| ||||||||||||||||| ||||||||| |||||||| |||||| ||    ||||||||||||||||||    
T  9106797 aagtcaaactgtttttgtataatctataagctattttcataagttatcctgctaagcttatggaaataagctg 9106869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 685 - 757
Target Start/End: Original strand, 17368652 - 17368724
Alignment:
Q  685 aagttaaactgtttttgtataagctataagctgttttcatatgttatcgtggagtgcttatggaaataagctg 757  Q
    |||| ||||||||||||| ||| ||||||| |||||||||| | |||| ||||| | ||||||||||||||||    
T  17368652 aagtcaaactgtttttgtgtaatctataagttgttttcataagctatcttggagaggttatggaaataagctg 17368724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 712 - 779
Target Start/End: Original strand, 36638750 - 36638817
Alignment:
Q  712 aagctgttttcatatgttatcgtggagtgcttatggaaataagctgtaataaactcatgaacatgtca 779  Q
    |||||||||||||| |||||| | ||| |||||||||||||||||| || || || ||||||||||||    
T  36638750 aagctgttttcataagttatcctagagagcttatggaaataagctgaaaaaagcttatgaacatgtca 36638817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 702 - 757
Target Start/End: Complemental strand, 37588437 - 37588382
Alignment:
Q  702 tataagctataagctgttttcatatgttatcgtggagtgcttatggaaataagctg 757  Q
    ||||||||||||| |||||||||| |||||  ||||| ||||||||||||||||||    
T  37588437 tataagctataagttgttttcataagttattctggagagcttatggaaataagctg 37588382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 685 - 756
Target Start/End: Original strand, 39105440 - 39105511
Alignment:
Q  685 aagttaaactgtttttgtataagctataagctgttttcatatgttatcgtggagtgcttatggaaataagct 756  Q
    |||||||| |||||| ||||||||||||| ||||||||||| | |||| |||||  |||||| |||||||||    
T  39105440 aagttaaattgttttcgtataagctataatctgttttcataagctatcttggagaacttatgaaaataagct 39105511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 685 - 754
Target Start/End: Original strand, 12425547 - 12425616
Alignment:
Q  685 aagttaaactgtttttgtataagctataagctgttttcatatgttatcgtggagtgcttatggaaataag 754  Q
    |||||||| |||||| ||||||||||||||||||||||| | | |||| |||||  |||||| |||||||    
T  12425547 aagttaaattgttttcgtataagctataagctgttttcacaagctatcttggagaacttatgaaaataag 12425616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 694 - 779
Target Start/End: Complemental strand, 18543281 - 18543197
Alignment:
Q  694 tgtttttgtataagctataagctgttttcatatgttatcgtggagtgcttatggaaataagctgtaataaactcatgaacatgtca 779  Q
    ||||||| |||||| |||||| |||||||||| | |||| ||||| ||||||| |||||||||| ||  |||||||| ||||||||    
T  18543281 tgtttttatataagatataagttgttttcataagctatcctggagagcttatg-aaataagctgaaaacaactcatggacatgtca 18543197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 685 - 756
Target Start/End: Original strand, 2568633 - 2568705
Alignment:
Q  685 aagttaaactgttttt-gtataagctataagctgttttcatatgttatcgtggagtgcttatggaaataagct 756  Q
    |||||||| ||||||| |||||||||||||| |||||||||| | |||| ||||| ||| ||| |||||||||    
T  2568633 aagttaaattgtttttcgtataagctataagttgttttcataagctatcatggagagctaatgaaaataagct 2568705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 708 - 756
Target Start/End: Original strand, 8481217 - 8481265
Alignment:
Q  708 ctataagctgttttcatatgttatcgtggagtgcttatggaaataagct 756  Q
    |||||||||||||||||| |||||| | ||| |||||||||||||||||    
T  8481217 ctataagctgttttcataagttatctttgagggcttatggaaataagct 8481265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 685 - 757
Target Start/End: Complemental strand, 9202842 - 9202770
Alignment:
Q  685 aagttaaactgtttttgtataagctataagctgttttcatatgttatcgtggagtgcttatggaaataagctg 757  Q
    |||||||| ||||||  ||||||| |||||||||||||||| |||||| || ||  |||||| ||||||||||    
T  9202842 aagttaaattgttttcatataagcaataagctgttttcataagttatcttgaagaacttatgaaaataagctg 9202770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 690 - 757
Target Start/End: Original strand, 3977289 - 3977356
Alignment:
Q  690 aaactgtttttgtataagctataagctgttttcatatgttatcgtggagtgcttatggaaataagctg 757  Q
    ||||||||||||||||| | |||||||||||||||| ||| | ||||||   ||||| ||||||||||    
T  3977289 aaactgtttttgtataacccataagctgttttcataagttgttgtggagaaattatgaaaataagctg 3977356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 690 - 757
Target Start/End: Original strand, 11104899 - 11104966
Alignment:
Q  690 aaactgtttttgtataagctataagctgttttcatatgttatcgtggagtgcttatggaaataagctg 757  Q
    ||||||| ||||||||| ||||||||| |||||||| ||||||    || ||||||||||||||||||    
T  11104899 aaactgtgtttgtataatctataagctattttcataagttatctgcaagagcttatggaaataagctg 11104966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 702 - 757
Target Start/End: Complemental strand, 37526276 - 37526221
Alignment:
Q  702 tataagctataagctgttttcatatgttatcgtggagtgcttatggaaataagctg 757  Q
    ||||||||||||| |||||||||| ||| |  ||||| ||||||||||||||||||    
T  37526276 tataagctataagttgttttcataagttgttctggagagcttatggaaataagctg 37526221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 694 - 760
Target Start/End: Complemental strand, 6587192 - 6587126
Alignment:
Q  694 tgtttttgtataagctataagctgttttcatatgttatcgtggagtgcttatggaaataagctgtaa 760  Q
    |||||| |||||||||||||| |||||||||| | ||| ||||||  ||| || |||||||||||||    
T  6587192 tgttttcgtataagctataagttgttttcataagctatagtggagaacttgtgaaaataagctgtaa 6587126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 700 - 757
Target Start/End: Complemental strand, 12494878 - 12494821
Alignment:
Q  700 tgtataagctataagctgttttcatatgttatcgtggagtgcttatggaaataagctg 757  Q
    |||||||||||||||||||||||||| | ||||||| ||  |||||  ||||||||||    
T  12494878 tgtataagctataagctgttttcataggctatcgtgtagaacttataaaaataagctg 12494821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 685 - 738
Target Start/End: Original strand, 32372600 - 32372653
Alignment:
Q  685 aagttaaactgtttttgtataagctataagctgttttcatatgttatcgtggag 738  Q
    ||||| || |||||||||||| ||||||||||||||||| | |||||| |||||    
T  32372600 aagttgaattgtttttgtatatgctataagctgttttcacaagttatcttggag 32372653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 685 - 726
Target Start/End: Original strand, 34736315 - 34736356
Alignment:
Q  685 aagttaaactgtttttgtataagctataagctgttttcatat 726  Q
    |||||||| |||||||  ||||||||||||||||||||||||    
T  34736315 aagttaaattgttttttgataagctataagctgttttcatat 34736356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.0000000000001; HSPs: 21)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 685 - 757
Target Start/End: Original strand, 7472287 - 7472359
Alignment:
Q  685 aagttaaactgtttttgtataagctataagctgttttcatatgttatcgtggagtgcttatggaaataagctg 757  Q
    |||||||| ||||||||||||| ||||||||||||| |||| | |||| ||||| ||||||| ||||||||||    
T  7472287 aagttaaattgtttttgtataatctataagctgtttccataagctatcttggagagcttatgaaaataagctg 7472359  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 696 - 779
Target Start/End: Complemental strand, 7137081 - 7136998
Alignment:
Q  696 tttttgtataagctataagctgttttcatatgttatcgtggagtgcttatggaaataagctgtaataaactcatgaacatgtca 779  Q
    ||||||||||| |||||||||||||||||| | |||| |||||  |||||| |||||||||| ||  |||| ||||| ||||||    
T  7137081 tttttgtataatctataagctgttttcataagctatcttggagaacttatgaaaataagctgaaaataacttatgaatatgtca 7136998  T

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Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 694 - 753
Target Start/End: Original strand, 15515526 - 15515585
Alignment:
Q  694 tgtttttgtataagctataagctgttttcatatgttatcgtggagtgcttatggaaataa 753  Q
    |||||| |||||||||||||| |||||||||| |||||| ||||  ||||||||||||||    
T  15515526 tgttttcgtataagctataagttgttttcataagttatcatggatagcttatggaaataa 15515585  T

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Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 694 - 757
Target Start/End: Complemental strand, 35590977 - 35590914
Alignment:
Q  694 tgtttttgtataagctataagctgttttcatatgttatcgtggagtgcttatggaaataagctg 757  Q
    |||||||||||||||||||||  | ||||||| | |||| ||||| ||||||||||||||||||    
T  35590977 tgtttttgtataagctataagtcgatttcataagctatcatggagagcttatggaaataagctg 35590914  T

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Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 697 - 779
Target Start/End: Original strand, 34290224 - 34290306
Alignment:
Q  697 ttttgtataagctataagctgttttcatatgttatcgtggagtgcttatggaaataagctgtaataaactcatgaacatgtca 779  Q
    ||||||||||||||||||||||||||||| | |||| || ||  |||||| |||||||||| ||  |||| ||||| ||||||    
T  34290224 ttttgtataagctataagctgttttcataagctatcttgaagaacttatgaaaataagctgaaaacaacttatgaatatgtca 34290306  T

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Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 690 - 759
Target Start/End: Original strand, 44422680 - 44422749
Alignment:
Q  690 aaactgtttttgtataagctataagctgttttcatatgttatcgtggagtgcttatggaaataagctgta 759  Q
    ||||||||||  ||||||||||||||| |||| ||| | |||| ||||| ||||||| ||||||||||||    
T  44422680 aaactgttttcatataagctataagctatttttataagctatcctggagagcttatgaaaataagctgta 44422749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 685 - 725
Target Start/End: Complemental strand, 24915145 - 24915105
Alignment:
Q  685 aagttaaactgtttttgtataagctataagctgttttcata 725  Q
    |||||||| |||||||||||| |||||||||||||||||||    
T  24915145 aagttaaattgtttttgtatatgctataagctgttttcata 24915105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 579 - 619
Target Start/End: Complemental strand, 40201078 - 40201038
Alignment:
Q  579 ttttgcagcttttagcataagagcttattataagctatttc 619  Q
    ||||||||||||||| ||||| |||||||||||||||||||    
T  40201078 ttttgcagcttttagaataagcgcttattataagctatttc 40201038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 698 - 757
Target Start/End: Original strand, 2777881 - 2777940
Alignment:
Q  698 tttgtataagctataagctgttttcatatgttatcgtggagtgcttatggaaataagctg 757  Q
    |||||||||||||||||||||||| ||| |||| | |||||  |||||| ||||||||||    
T  2777881 tttgtataagctataagctgttttaataagttaacttggagaacttatgaaaataagctg 2777940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 690 - 757
Target Start/End: Complemental strand, 12564963 - 12564896
Alignment:
Q  690 aaactgtttttgtataagctataagctgttttcatatgttatcgtggagtgcttatggaaataagctg 757  Q
    ||||||||||  ||||||||||||| |||||||||| | |||| |  |||||||| ||||||||||||    
T  12564963 aaactgttttcatataagctataagttgttttcataagctatcttttagtgcttacggaaataagctg 12564896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 692 - 779
Target Start/End: Original strand, 35017559 - 35017646
Alignment:
Q  692 actgtttttgtataagctataagctgttttcatatgttatcgtggagtgcttatggaaataagctgtaataaactcatgaacatgtca 779  Q
    |||||||| |||||| ||||| |||||||||||| | | || ||||| ||||||||||||||| || ||  |||| ||| ||||||||    
T  35017559 actgttttcgtataatctatatgctgttttcataagctgtcctggagagcttatggaaataagttgaaaataacttatggacatgtca 35017646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 685 - 732
Target Start/End: Complemental strand, 51160583 - 51160536
Alignment:
Q  685 aagttaaactgtttttgtataagctataagctgttttcatatgttatc 732  Q
    |||| ||||||||| ||||||||||||||||| |||||||| ||||||    
T  51160583 aagtcaaactgtttctgtataagctataagctattttcataagttatc 51160536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 702 - 756
Target Start/End: Original strand, 4622086 - 4622140
Alignment:
Q  702 tataagctataagctgttttcatatgttatcgtggagtgcttatggaaataagct 756  Q
    ||||||||||||||||||| |||||| |||| ||||| |||| || |||||||||    
T  4622086 tataagctataagctgtttccatatgctatcttggagagcttgtgaaaataagct 4622140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 685 - 727
Target Start/End: Complemental strand, 9572202 - 9572160
Alignment:
Q  685 aagttaaactgtttttgtataagctataagctgttttcatatg 727  Q
    |||||||| || ||||||||||||||||||| |||||||||||    
T  9572202 aagttaaattgcttttgtataagctataagccgttttcatatg 9572160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 702 - 756
Target Start/End: Complemental strand, 28482310 - 28482256
Alignment:
Q  702 tataagctataagctgttttcatatgttatcgtggagtgcttatggaaataagct 756  Q
    |||||||||||||||||||| ||| |||||| ||||| ||||| | |||||||||    
T  28482310 tataagctataagctgtttttataagttatcttggagagcttacgaaaataagct 28482256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 702 - 775
Target Start/End: Complemental strand, 14630043 - 14629970
Alignment:
Q  702 tataagctataagctgttttcatatgttatcgtggagtgcttatggaaataagctgtaataaactcatgaacat 775  Q
    ||||||||||||||| |||||||| | |||| |||||   |||||||||||||||| ||  |||| ||||||||    
T  14630043 tataagctataagctattttcataagctatcttggagactttatggaaataagctgaaaacaacttatgaacat 14629970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 702 - 779
Target Start/End: Original strand, 25479574 - 25479651
Alignment:
Q  702 tataagctataagctgttttcatatgttatcgtggagtgcttatggaaataagctgtaataaactcatgaacatgtca 779  Q
    |||| |||||||| |||||||||| | |||| | ||| ||||||| |||||||||| ||  |||| ||||||||||||    
T  25479574 tataggctataagttgttttcataagctatcctagagagcttatgaaaataagctgaaaacaactaatgaacatgtca 25479651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 565 - 648
Target Start/End: Complemental strand, 33527316 - 33527231
Alignment:
Q  565 ggataaacaacttattttgcagcttttagcataagagcttat-tataagctatttcgtcaa-aaaacataaaataaagtcaaactg 648  Q
    ||||||||| |||||||||||||||  |||||||| ||||||  ||||||||||||   || |||| |||||||| ||||||||||    
T  33527316 ggataaacagcttattttgcagcttagagcataagcgcttatgaataagctatttctaaaacaaaagataaaatacagtcaaactg 33527231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 685 - 738
Target Start/End: Complemental strand, 38018458 - 38018405
Alignment:
Q  685 aagttaaactgtttttgtataagctataagctgttttcatatgttatcgtggag 738  Q
    |||||||| |||||| |||||||||| ||||||||||||||  ||||| |||||    
T  38018458 aagttaaattgttttcgtataagctagaagctgttttcatacattatcttggag 38018405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 696 - 757
Target Start/End: Original strand, 45975677 - 45975738
Alignment:
Q  696 tttttgtataagctataagctgttttcatatgttatcgtggagtgcttatggaaataagctg 757  Q
    ||||||||||||||| |||||||||||||| | |||| |||||   ||||| ||||||||||    
T  45975677 tttttgtataagctacaagctgttttcataagctatcttggagaatttatgaaaataagctg 45975738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 686 - 731
Target Start/End: Original strand, 46423354 - 46423399
Alignment:
Q  686 agttaaactgtttttgtataagctataagctgttttcatatgttat 731  Q
    ||||||| |||||| | ||||||||||||||||||||||| |||||    
T  46423354 agttaaattgttttggcataagctataagctgttttcataagttat 46423399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.0000000000004; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 693 - 756
Target Start/End: Complemental strand, 42734023 - 42733960
Alignment:
Q  693 ctgtttttgtataagctataagctgttttcatatgttatcgtggagtgcttatggaaataagct 756  Q
    |||||||||||||||||||||| ||||||||   | |||||||||| |||||||||||||||||    
T  42734023 ctgtttttgtataagctataagttgttttcaccagctatcgtggagagcttatggaaataagct 42733960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 702 - 756
Target Start/End: Complemental strand, 51510270 - 51510216
Alignment:
Q  702 tataagctataagctgttttcatatgttatcgtggagtgcttatggaaataagct 756  Q
    ||||| ||||||| |||||||||| |||||||||||| |||||||||||||||||    
T  51510270 tataaactataagttgttttcataagttatcgtggagagcttatggaaataagct 51510216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 702 - 757
Target Start/End: Complemental strand, 14548798 - 14548743
Alignment:
Q  702 tataagctataagctgttttcatatgttatcgtggagtgcttatggaaataagctg 757  Q
    ||||||||||||| |||||||||| |||||  ||||| ||||||||||||||||||    
T  14548798 tataagctataagttgttttcataagttattctggagagcttatggaaataagctg 14548743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 685 - 757
Target Start/End: Original strand, 1816559 - 1816631
Alignment:
Q  685 aagttaaactgtttttgtataagctataagctgttttcatatgttatcgtggagtgcttatggaaataagctg 757  Q
    |||| |||||||||||||||||| |||||| |||||||||| | |||  ||||| ||||||  ||||||||||    
T  1816559 aagtcaaactgtttttgtataagatataagttgttttcataagctatactggagagcttatcaaaataagctg 1816631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 685 - 757
Target Start/End: Complemental strand, 24887377 - 24887305
Alignment:
Q  685 aagttaaactgtttttgtataagctataagctgttttcatatgttatcgtggagtgcttatggaaataagctg 757  Q
    |||| ||||||| ||  ||||||||| |||||||||||||| | |||| ||||| |||||||| |||||||||    
T  24887377 aagtcaaactgtattcatataagctaaaagctgttttcataagctatcctggagagcttatgggaataagctg 24887305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 696 - 779
Target Start/End: Original strand, 40665416 - 40665499
Alignment:
Q  696 tttttgtataagctataagctgttttcatatgttatcgtggagtgcttatggaaataagctgtaataaactcatgaacatgtca 779  Q
    ||||||| |||| |||||| |||||||||| |||||| ||||| ||||||  |||||||||| ||  | || ||||||||||||    
T  40665416 tttttgtgtaagttataagatgttttcataagttatcttggagagcttataaaaataagctgaaaacagcttatgaacatgtca 40665499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 693 - 779
Target Start/End: Original strand, 24785189 - 24785275
Alignment:
Q  693 ctgtttttgtataagctataagctgttttcatatgttatcgtggagtgcttatggaaataagctgtaataaactcatgaacatgtca 779  Q
    |||||||||||||| ||||||  |||||||||| | |||| | ||| ||||||| |||||||||  ||  |||| ||||||||||||    
T  24785189 ctgtttttgtataatctataacgtgttttcataagctatcctcgagagcttatgtaaataagctaaaaacaacttatgaacatgtca 24785275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 685 - 779
Target Start/End: Complemental strand, 45433033 - 45432939
Alignment:
Q  685 aagttaaactgtttttgtataagctataagctgttttcatatgttatcgtggagtgcttatggaaataagctgtaataaactcatgaacatgtca 779  Q
    |||||||| ||||||  ||| ||||||||  |||||||| | || ||| || || |||||||||||||||||| ||  |||| ||||||||||||    
T  45433033 aagttaaattgttttcatatgagctataaattgttttcacaagtcatcctgtagagcttatggaaataagctgaaaacaacttatgaacatgtca 45432939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 696 - 745
Target Start/End: Complemental strand, 23952189 - 23952140
Alignment:
Q  696 tttttgtataagctataagctgttttcatatgttatcgtggagtgcttat 745  Q
    |||||||||||||| |||||||||||||||  |||| |||||| ||||||    
T  23952189 tttttgtataagctgtaagctgttttcataatttatggtggagagcttat 23952140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 688 - 725
Target Start/End: Complemental strand, 25447335 - 25447298
Alignment:
Q  688 ttaaactgtttttgtataagctataagctgttttcata 725  Q
    ||||| |||||||||||||||||||| |||||||||||    
T  25447335 ttaaattgtttttgtataagctataaactgttttcata 25447298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 687 - 732
Target Start/End: Complemental strand, 44061115 - 44061070
Alignment:
Q  687 gttaaactgtttttgtataagctataagctgttttcatatgttatc 732  Q
    |||||| ||||||| ||||||||||||| |||||||||||| ||||    
T  44061115 gttaaattgtttttctataagctataagttgttttcatatgatatc 44061070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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