View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2931R-Insertion-4 (Length: 608)

Name: NF2931R-Insertion-4
Description: NF2931R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2931R-Insertion-4
NF2931R-Insertion-4
[»] chr2 (10 HSPs)
chr2 (9-374)||(4481568-4481933)
chr2 (367-498)||(4480819-4480950)
chr2 (498-603)||(4480642-4480747)
chr2 (291-361)||(19235103-19235173)
chr2 (291-362)||(26784459-26784530)
chr2 (291-361)||(42543328-42543398)
chr2 (291-324)||(907810-907843)
chr2 (273-361)||(23714361-23714450)
chr2 (273-361)||(24102033-24102122)
chr2 (289-361)||(13592415-13592487)
[»] chr8 (6 HSPs)
chr8 (291-361)||(38178379-38178449)
chr8 (291-344)||(45512614-45512667)
chr8 (291-347)||(4011190-4011246)
chr8 (293-361)||(10080028-10080096)
chr8 (293-361)||(29520743-29520810)
chr8 (291-331)||(45419358-45419398)
[»] chr1 (11 HSPs)
chr1 (290-361)||(44008672-44008743)
chr1 (288-362)||(50806761-50806835)
chr1 (288-361)||(52442644-52442717)
chr1 (291-361)||(2544692-2544761)
chr1 (291-361)||(3818975-3819045)
chr1 (291-361)||(12231458-12231528)
chr1 (291-361)||(30834096-30834166)
chr1 (291-353)||(51584845-51584907)
chr1 (292-361)||(6025698-6025767)
chr1 (291-343)||(10272369-10272421)
chr1 (297-345)||(43423828-43423876)
[»] chr7 (6 HSPs)
chr7 (291-361)||(14593853-14593923)
chr7 (291-333)||(44401244-44401286)
chr7 (273-349)||(28359362-28359439)
chr7 (291-361)||(16013376-16013446)
chr7 (291-349)||(28628052-28628110)
chr7 (294-334)||(45601596-45601636)
[»] chr5 (5 HSPs)
chr5 (291-349)||(6859486-6859544)
chr5 (291-349)||(6889098-6889156)
chr5 (288-358)||(14749403-14749473)
chr5 (291-331)||(28005-28045)
chr5 (293-361)||(219575-219643)
[»] chr3 (4 HSPs)
chr3 (288-346)||(31261058-31261116)
chr3 (291-361)||(2340836-2340906)
chr3 (291-361)||(39600800-39600870)
chr3 (291-361)||(54365094-54365164)
[»] chr6 (1 HSPs)
chr6 (291-331)||(9593827-9593867)
[»] chr4 (4 HSPs)
chr4 (291-331)||(45204958-45204998)
chr4 (288-366)||(7682026-7682104)
chr4 (293-349)||(26356724-26356780)
chr4 (291-331)||(35690394-35690434)


Alignment Details
Target: chr2 (Bit Score: 321; Significance: 0; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 9 - 374
Target Start/End: Complemental strand, 4481933 - 4481568
Alignment:
Q  9 cttcaccctttacaaaaataaaaggaatatattaatgaaaggaataaatcccaagtaatgtgagttcctcttgaaaataagcaagcaaatgtatatgtac 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||     
T  4481933 cttcaccctttacaaaaataaaaggaatatattaatgaaaggaataaatcccaagtaatgtgagtacctcttgaaaataagcaagcaaatgtatatgtaa 4481834  T
Q  109 ccttaacattcaaggttgatacaattatttgtctccttcaaagatagcannnnnnnagggaaccttcaaagatagtattaaaattcattttgagttatga 208  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||| |       ||||||||||||||||||||||||||||||||||||||||||||    
T  4481833 ccttaacattcaaggttgatacaattagttgtctccttcaaagatagtatttttttagggaaccttcaaagatagtattaaaattcattttgagttatga 4481734  T
Q  209 tcactatacagaccacaacaactataaccaagcctaatctgtcatcatatatctataaaaacttattaatctctaggttttgatagtttctcttataatt 308  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4481733 tcactatacagaccacaacaactataaccaagcctaatctgtcatcatatatctataaaaacttattaatctctaggttttgatagtttctcttataatt 4481634  T
Q  309 tttctaggccttcctccacctctagcggtttgactaccctctatttgatctaccttccatctctct 374  Q
    |||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  4481633 tttctaggtcttcctccacctctagcggtttgactaccctccatttgatctaccttccatctctct 4481568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 112; E-Value: 3e-56
Query Start/End: Original strand, 367 - 498
Target Start/End: Complemental strand, 4480950 - 4480819
Alignment:
Q  367 atctctctctaatgatgacattactaatctgatcccgactagccttttcatgtatccaacgtaacattctcatgtctgctacaaaagattcaacttcatc 466  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||   ||||||||||||||| |||||||||||||||||||||||||||||||    
T  4480950 atctctctctaatgatgacattattaatctgatcccgactagccttttcacacatccaacgtaacattgtcatgtctgctacaaaagattcaacttcatc 4480851  T
Q  467 gttctacatcttctatcagccataaaacaaaa 498  Q
    ||||||||||||||||||||||||||||||||    
T  4480850 gttctacatcttctatcagccataaaacaaaa 4480819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 498 - 603
Target Start/End: Complemental strand, 4480747 - 4480642
Alignment:
Q  498 atttgaaaaatgttaagcaatcttggttagattcttttgaatgagtgaatttgaatacttactaattttcctatgtttgaatagtcattagtatatatct 597  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  4480747 atttgaaaaatgttaagcaatcttggttagattcttttgaatgagtgaatttgaatacttactaattttcctatggttgaatagtcattagtatatatct 4480648  T
Q  598 tgttaa 603  Q
    ||||||    
T  4480647 tgttaa 4480642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 291 - 361
Target Start/End: Original strand, 19235103 - 19235173
Alignment:
Q  291 atagtttctcttataatttttctaggccttcctccacctctagcggtttgactaccctctatttgatctac 361  Q
    ||||||||||||||| |||||||||| ||||||| | |||||| | ||||||| ||||| || ||||||||    
T  19235103 atagtttctcttatagtttttctaggtcttcctctatctctagtgatttgactcccctccatctgatctac 19235173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 291 - 362
Target Start/End: Original strand, 26784459 - 26784530
Alignment:
Q  291 atagtttctcttataatttttctaggccttcctccacctctagcggtttgactaccctctatttgatctacc 362  Q
    ||||||||||||||| |||||||||| ||| |||  ||||||| | ||||||||||||| || | |||||||    
T  26784459 atagtttctcttatagtttttctaggtctttctctgcctctagtgatttgactaccctccatcttatctacc 26784530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 291 - 361
Target Start/End: Complemental strand, 42543398 - 42543328
Alignment:
Q  291 atagtttctcttataatttttctaggccttcctccacctctagcggtttgactaccctctatttgatctac 361  Q
    ||||||||||||||| |||||||||| || || | |||||||| | | ||||| ||||| |||||||||||    
T  42543398 atagtttctcttatagtttttctaggtctacccctacctctagtgatctgactcccctccatttgatctac 42543328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 291 - 324
Target Start/End: Complemental strand, 907843 - 907810
Alignment:
Q  291 atagtttctcttataatttttctaggccttcctc 324  Q
    ||||||||||||||||| ||||||||||||||||    
T  907843 atagtttctcttataatatttctaggccttcctc 907810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 273 - 361
Target Start/End: Original strand, 23714361 - 23714450
Alignment:
Q  273 attaatctctaggt-tttgatagtttctcttataatttttctaggccttcctccacctctagcggtttgactaccctctatttgatctac 361  Q
    |||||||||||| | ||||||| ||||||||||| |||||||| | |||| || || ||||| | ||||||| ||| | |||||||||||    
T  23714361 attaatctctagatctttgataatttctcttatagtttttctaagtcttcatctacgtctagtgatttgactccccaccatttgatctac 23714450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 273 - 361
Target Start/End: Original strand, 24102033 - 24102122
Alignment:
Q  273 attaatctctaggt-tttgatagtttctcttataatttttctaggccttcctccacctctagcggtttgactaccctctatttgatctac 361  Q
    |||||||||||| | ||||||| ||||||||||| |||||||| | |||| || || ||||| | ||||||| ||| | |||||||||||    
T  24102033 attaatctctagatctttgataatttctcttatagtttttctaagtcttcatctacgtctagtgatttgactccccaccatttgatctac 24102122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 289 - 361
Target Start/End: Original strand, 13592415 - 13592487
Alignment:
Q  289 tgatagtttctcttataatttttctaggccttcctccacctctagcggtttgactaccctctatttgatctac 361  Q
    ||||||||||||||||| || ||||||| ||||||  |||||| |   | |||||| ||||||||||||||||    
T  13592415 tgatagtttctcttatagttcttctaggtcttcctatacctcttgaaatatgactatcctctatttgatctac 13592487  T

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Target: chr8 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 291 - 361
Target Start/End: Original strand, 38178379 - 38178449
Alignment:
Q  291 atagtttctcttataatttttctaggccttcctccacctctagcggtttgactaccctctatttgatctac 361  Q
    ||||||||||||||| |||||||||| ||||||| |||||||||| |||||||| |||| || ||||||||    
T  38178379 atagtttctcttatagtttttctaggtcttcctctacctctagcgatttgactatcctccatctgatctac 38178449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 291 - 344
Target Start/End: Original strand, 45512614 - 45512667
Alignment:
Q  291 atagtttctcttataatttttctaggccttcctccacctctagcggtttgacta 344  Q
    ||||||||||||||| |||||||||| |||||||  ||||||| | ||||||||    
T  45512614 atagtttctcttatagtttttctaggtcttcctctgcctctagtgatttgacta 45512667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 291 - 347
Target Start/End: Complemental strand, 4011246 - 4011190
Alignment:
Q  291 atagtttctcttataatttttctaggccttcctccacctctagcggtttgactaccc 347  Q
    ||||||||||||||| |||||||||| |||||||   |||||||| ||| |||||||    
T  4011246 atagtttctcttatagtttttctaggtcttcctctgtctctagcgatttaactaccc 4011190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 293 - 361
Target Start/End: Original strand, 10080028 - 10080096
Alignment:
Q  293 agtttctcttataatttttctaggccttcctccacctctagcggtttgactaccctctatttgatctac 361  Q
    ||||| ||||||| ||| |||||| ||||||| |||||||| | ||||||| ||||  |||||||||||    
T  10080028 agtttttcttatagtttctctaggtcttcctctacctctagtgatttgactccccttcatttgatctac 10080096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 293 - 361
Target Start/End: Complemental strand, 29520810 - 29520743
Alignment:
Q  293 agtttctcttataatttttctaggccttcctccacctctagcggtttgactaccctctatttgatctac 361  Q
    ||||||||||||| |||||||||| ||||||| |||||| | | |||||||| |||| || ||||||||    
T  29520810 agtttctcttatagtttttctagg-cttcctctacctcttgtgatttgactatcctccatctgatctac 29520743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 291 - 331
Target Start/End: Complemental strand, 45419398 - 45419358
Alignment:
Q  291 atagtttctcttataatttttctaggccttcctccacctct 331  Q
    ||||||||||||||| |||||||||| ||||||| ||||||    
T  45419398 atagtttctcttatagtttttctaggtcttcctctacctct 45419358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000006; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 290 - 361
Target Start/End: Complemental strand, 44008743 - 44008672
Alignment:
Q  290 gatagtttctcttataatttttctaggccttcctccacctctagcggtttgactaccctctatttgatctac 361  Q
    |||||||||||||| | |||||||||| |||||||  ||||||| | ||||||||||| |||||| ||||||    
T  44008743 gatagtttctcttagattttttctaggtcttcctctgcctctagtgatttgactacccgctatttaatctac 44008672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 288 - 362
Target Start/End: Complemental strand, 50806835 - 50806761
Alignment:
Q  288 ttgatagtttctcttataatttttctaggccttcctccacctctagcggtttgactaccctctatttgatctacc 362  Q
    |||||||||||||||||  |||||||||| |||| || || ||||| | ||||||| ||||| ||||||||||||    
T  50806835 ttgatagtttctcttattgtttttctaggtcttcatctacttctagtgatttgactcccctccatttgatctacc 50806761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 288 - 361
Target Start/End: Original strand, 52442644 - 52442717
Alignment:
Q  288 ttgatagtttctcttataatttttctaggccttcctccacctctagcggtttgactaccctctatttgatctac 361  Q
    |||||||||||||||||| || ||||||| ||||||| |||||||| | ||||||| || || || ||||||||    
T  52442644 ttgatagtttctcttatatttgttctaggtcttcctctacctctagagatttgactcccttccatctgatctac 52442717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 291 - 361
Target Start/End: Complemental strand, 2544761 - 2544692
Alignment:
Q  291 atagtttctcttataatttttctaggccttcctccacctctagcggtttgactaccctctatttgatctac 361  Q
    ||||||||||| ||| |||||||||| ||||||| ||||||||  ||||||||| |||| || ||||||||    
T  2544761 atagtttctctgatagtttttctaggtcttcctctacctctag-tgtttgactatcctccatctgatctac 2544692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 291 - 361
Target Start/End: Original strand, 3818975 - 3819045
Alignment:
Q  291 atagtttctcttataatttttctaggccttcctccacctctagcggtttgactaccctctatttgatctac 361  Q
    ||||||||||||||| |||||| ||| |||||||   |||||| ||||||| ||||||| || ||||||||    
T  3818975 atagtttctcttatagtttttcaaggtcttcctctttctctagtggtttgattaccctccatctgatctac 3819045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 291 - 361
Target Start/End: Complemental strand, 12231528 - 12231458
Alignment:
Q  291 atagtttctcttataatttttctaggccttcctccacctctagcggtttgactaccctctatttgatctac 361  Q
    ||||| ||||||||| |||||||| |  ||||||||||| ||| | ||||||||||||  |||||||||||    
T  12231528 atagtctctcttatagtttttctaagtattcctccacctttagtgatttgactacccttaatttgatctac 12231458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 291 - 361
Target Start/End: Original strand, 30834096 - 30834166
Alignment:
Q  291 atagtttctcttataatttttctaggccttcctccacctctagcggtttgactaccctctatttgatctac 361  Q
    |||||||||||||||  ||||||||| |||||||  |||||| || |||||||||| || || ||||||||    
T  30834096 atagtttctcttatagcttttctaggtcttcctctccctctatcgatttgactaccttccatctgatctac 30834166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 291 - 353
Target Start/End: Complemental strand, 51584907 - 51584845
Alignment:
Q  291 atagtttctcttataatttttctaggccttcctccacctctagcggtttgactaccctctatt 353  Q
    ||||||||||||||| |||||||||| ||||| | |||||||| | |||||||  ||||||||    
T  51584907 atagtttctcttatagtttttctaggtcttcccctacctctagtgatttgacttacctctatt 51584845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 292 - 361
Target Start/End: Complemental strand, 6025767 - 6025698
Alignment:
Q  292 tagtttctcttataatttttctaggccttcctccacctctagcggtttgactaccctctatttgatctac 361  Q
    |||| ||||||||| |||||||||| |||||||  ||||||| | ||||||||||||  || ||||||||    
T  6025767 tagtatctcttatagtttttctaggtcttcctctgcctctagtgatttgactaccctacatctgatctac 6025698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 291 - 343
Target Start/End: Complemental strand, 10272421 - 10272369
Alignment:
Q  291 atagtttctcttataatttttctaggccttcctccacctctagcggtttgact 343  Q
    |||||||||||||||| ||||||||| ||||| | |||||||| | |||||||    
T  10272421 atagtttctcttataagttttctaggtcttcccctacctctagtgatttgact 10272369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 297 - 345
Target Start/End: Complemental strand, 43423876 - 43423828
Alignment:
Q  297 tctcttataatttttctaggccttcctccacctctagcggtttgactac 345  Q
    |||||| ||||||||||||| ||||||| |||||||| | |||||||||    
T  43423876 tctcttgtaatttttctaggtcttcctctacctctagtgatttgactac 43423828  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 291 - 361
Target Start/End: Complemental strand, 14593923 - 14593853
Alignment:
Q  291 atagtttctcttataatttttctaggccttcctccacctctagcggtttgactaccctctatttgatctac 361  Q
    ||||||||||||||| |||||||||| ||||| | |||||||| | ||||||| | |||||| ||||||||    
T  14593923 atagtttctcttatagtttttctaggtcttcccctacctctagtgatttgactcctctctatctgatctac 14593853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 291 - 333
Target Start/End: Original strand, 44401244 - 44401286
Alignment:
Q  291 atagtttctcttataatttttctaggccttcctccacctctag 333  Q
    |||||||||||||||||||||||||| | ||||||||||||||    
T  44401244 atagtttctcttataatttttctaggtcatcctccacctctag 44401286  T

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Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 273 - 349
Target Start/End: Complemental strand, 28359439 - 28359362
Alignment:
Q  273 attaatctctaggttttgatagtttctcttataatttttctaggccttcctccacctct-agcggtttgactaccctc 349  Q
    |||||||||||| | || ||| |||||||||||||||||||||| ||| ||| |||||| || | |||||||||||||    
T  28359439 attaatctctagatcttaatattttctcttataatttttctaggactttctctacctctaagtgatttgactaccctc 28359362  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 291 - 361
Target Start/End: Complemental strand, 16013446 - 16013376
Alignment:
Q  291 atagtttctcttataatttttctaggccttcctccacctctagcggtttgactaccctctatttgatctac 361  Q
    ||||||||||||||| |||||||||| ||||| | |||||| | | ||||||| | |||||| ||||||||    
T  16013446 atagtttctcttatagtttttctaggtcttcccctacctctggtgatttgactcctctctatctgatctac 16013376  T

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Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 291 - 349
Target Start/End: Original strand, 28628052 - 28628110
Alignment:
Q  291 atagtttctcttataatttttctaggccttcctccacctctagcggtttgactaccctc 349  Q
    ||||||||||||||| |||||||||| ||||||| |||||| | | |||||||| ||||    
T  28628052 atagtttctcttatagtttttctaggtcttcctctacctcttgtgatttgactatcctc 28628110  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 294 - 334
Target Start/End: Complemental strand, 45601636 - 45601596
Alignment:
Q  294 gtttctcttataatttttctaggccttcctccacctctagc 334  Q
    |||||||||||| |||||||||| ||||||| |||||||||    
T  45601636 gtttctcttatagtttttctaggtcttcctctacctctagc 45601596  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 291 - 349
Target Start/End: Complemental strand, 6859544 - 6859486
Alignment:
Q  291 atagtttctcttataatttttctaggccttcctccacctctagcggtttgactaccctc 349  Q
    ||||||||||||||| |||||||||| |||||||  ||||||| |||||||||| ||||    
T  6859544 atagtttctcttatagtttttctaggtcttcctcttcctctagtggtttgactatcctc 6859486  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 291 - 349
Target Start/End: Complemental strand, 6889156 - 6889098
Alignment:
Q  291 atagtttctcttataatttttctaggccttcctccacctctagcggtttgactaccctc 349  Q
    ||||||||||||||| ||||||||||||||||||  |||| || |||||||||| ||||    
T  6889156 atagtttctcttatagtttttctaggccttcctcttcctcaagtggtttgactatcctc 6889098  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 288 - 358
Target Start/End: Complemental strand, 14749473 - 14749403
Alignment:
Q  288 ttgatagtttctcttataatttttctaggccttcctccacctctagcggtttgactaccctctatttgatc 358  Q
    |||||||||||||||||| |||||||||| |||||||  ||| ||| | ||||||| ||||| || |||||    
T  14749473 ttgatagtttctcttatagtttttctaggtcttcctctgcctttagtgatttgactcccctccatctgatc 14749403  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 291 - 331
Target Start/End: Complemental strand, 28045 - 28005
Alignment:
Q  291 atagtttctcttataatttttctaggccttcctccacctct 331  Q
    ||||||||||||||| |||||||||| ||||||| ||||||    
T  28045 atagtttctcttatagtttttctaggtcttcctcaacctct 28005  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 293 - 361
Target Start/End: Original strand, 219575 - 219643
Alignment:
Q  293 agtttctcttataatttttctaggccttcctccacctctagcggtttgactaccctctatttgatctac 361  Q
    ||||||| ||||| ||| | |||| |||||||  |||||||| |||||||||||||| || ||||||||    
T  219575 agtttctattatagtttatttaggtcttcctcagcctctagcagtttgactaccctccatatgatctac 219643  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 288 - 346
Target Start/End: Original strand, 31261058 - 31261116
Alignment:
Q  288 ttgatagtttctcttataatttttctaggccttcctccacctctagcggtttgactacc 346  Q
    |||||||||||||||||| |||||||||| |||||||  ||||||| | ||||||||||    
T  31261058 ttgatagtttctcttatagtttttctaggtcttcctctgcctctagtgatttgactacc 31261116  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 291 - 361
Target Start/End: Original strand, 2340836 - 2340906
Alignment:
Q  291 atagtttctcttataatttttctaggccttcctccacctctagcggtttgactaccctctatttgatctac 361  Q
    ||||||||||||||| |||| ||||| ||| ||| | || ||| | ||||||||||||||||||| |||||    
T  2340836 atagtttctcttatagttttcctaggtctttctctagctttagtgatttgactaccctctatttgctctac 2340906  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 291 - 361
Target Start/End: Original strand, 39600800 - 39600870
Alignment:
Q  291 atagtttctcttataatttttctaggccttcctccacctctagcggtttgactaccctctatttgatctac 361  Q
    ||||||||||||||| |||||||||| ||||||| |||||| ||  | |||||| |||| || ||||||||    
T  39600800 atagtttctcttatagtttttctaggtcttcctctacctcttgcaatctgactatcctcgatctgatctac 39600870  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 291 - 361
Target Start/End: Original strand, 54365094 - 54365164
Alignment:
Q  291 atagtttctcttataatttttctaggccttcctccacctctagcggtttgactaccctctatttgatctac 361  Q
    ||||||||||||||| |||||||||| |||||||  ||||| | ||| |||||| |||  |||||||||||    
T  54365094 atagtttctcttatagtttttctaggtcttcctctgcctctcgtggtctgactatccttcatttgatctac 54365164  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 291 - 331
Target Start/End: Original strand, 9593827 - 9593867
Alignment:
Q  291 atagtttctcttataatttttctaggccttcctccacctct 331  Q
    |||||||||||||||||||||||||| ||||||| ||||||    
T  9593827 atagtttctcttataatttttctaggtcttcctctacctct 9593867  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000003; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 291 - 331
Target Start/End: Original strand, 45204958 - 45204998
Alignment:
Q  291 atagtttctcttataatttttctaggccttcctccacctct 331  Q
    ||||||||||||||| |||||||||| ||||||||||||||    
T  45204958 atagtttctcttatagtttttctaggtcttcctccacctct 45204998  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 288 - 366
Target Start/End: Original strand, 7682026 - 7682104
Alignment:
Q  288 ttgatagtttctcttataatttttctaggccttcctccacctctagcggtttgactaccctctatttgatctaccttcc 366  Q
    |||||||||||||||||| |||||| ||| |||||||  ||||||| | | ||||||||||| || | |||||| ||||    
T  7682026 ttgatagtttctcttatagtttttccaggtcttcctctgcctctagtgatgtgactaccctccatctaatctactttcc 7682104  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 293 - 349
Target Start/End: Complemental strand, 26356780 - 26356724
Alignment:
Q  293 agtttctcttataatttttctaggccttcctccacctctagcggtttgactaccctc 349  Q
    ||||||||||||| |||||||||| ||||| | |||||||| | ||||||| |||||    
T  26356780 agtttctcttatagtttttctaggtcttcccctacctctagtgatttgactcccctc 26356724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 291 - 331
Target Start/End: Complemental strand, 35690434 - 35690394
Alignment:
Q  291 atagtttctcttataatttttctaggccttcctccacctct 331  Q
    ||||||||||||||| |||||||||| ||||||| ||||||    
T  35690434 atagtttctcttatagtttttctaggtcttcctctacctct 35690394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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