View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2931R-Insertion-5 (Length: 608)

Name: NF2931R-Insertion-5
Description: NF2931R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2931R-Insertion-5
NF2931R-Insertion-5
[»] chr5 (1 HSPs)
chr5 (8-577)||(26358599-26359167)
[»] chr4 (3 HSPs)
chr4 (9-259)||(53328594-53328844)
chr4 (36-247)||(22898445-22898656)
chr4 (36-247)||(22950113-22950324)
[»] chr7 (1 HSPs)
chr7 (29-260)||(39954917-39955148)
[»] chr3 (5 HSPs)
chr3 (30-228)||(21584670-21584868)
chr3 (36-196)||(24923539-24923699)
chr3 (36-260)||(24981925-24982149)
chr3 (36-199)||(24919965-24920128)
chr3 (36-136)||(31825636-31825736)
[»] chr2 (2 HSPs)
chr2 (39-247)||(41027464-41027672)
chr2 (8-56)||(30012096-30012144)


Alignment Details
Target: chr5 (Bit Score: 488; Significance: 0; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 488; E-Value: 0
Query Start/End: Original strand, 8 - 577
Target Start/End: Original strand, 26358599 - 26359167
Alignment:
Q  8 agcagtaaccgttttgcgacgagcatgttcagtgtaagtaacagcatcacgaataacattctcaagaaatatcttaagaacaccacgagtttcttcatag 107  Q
    ||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  26358599 agcagtaactgttttgcgacgagcatgttcagtgtaagtgacagcatcacgaataacattctcaagaaatatcttgagaacaccacgagtttcttcatag 26358698  T
Q  108 atcagaccactgatacgctttacaccaccacgccttgcaagacgacgaatcgcgggtttggtaattccctgaatgttatctcgaagaactttgcggtgac 207  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  26358699 atcagaccactgatacgttttacaccaccacgccttgcaagacgacgaatcgcgggtttggtaattccctgaatgttatctcgaagaactttgcgatgac 26358798  T
Q  208 gcttagcaccaccctttcctaaaccttttcctccttttcctcttcctgacattgttgattgcaagatcttgtttcgaacttggaaatttcgattttggtg 307  Q
    |||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||| |||    
T  26358799 gctttgcaccaccctttcctaaaccctttcctccttttcctcttcctgacattgttgattgcaagatcttgtttcgagcttcgaaatttcgattttagtg 26358898  T
Q  308 tgttgaagttgttgttggttggttctgtttcgatgtgtatgagggtttgttttatatagaatttgagaagataaatgatttgccgttggattaggtggtg 407  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||| |||||||    
T  26358899 tgttgtagttgttgttggttggttctgtttcgatgtgtatgagggtttg--ttatatagaatttgagaagataaatgatttgccgttggattgggtggtg 26358996  T
Q  408 atccgtgtgaaggacatattcgatgatatgaaccgttggattaaaaatgattggct-gaaaaggtgtcacgcggatcgccagcgtggctttcaattttcg 506  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||| ||||||||||||||||||||||||| ||||||||||||    
T  26358997 atccgtgtgaaggacatattcgatgatatgaaccgttggattacaaatgattggctggaaagggtgtcacgcggatcgccagcgtggttttcaattttcg 26359096  T
Q  507 gaatggcgctaagcaattttgaagtactatcacttaccgctcaggtttatctccaaaataaaatttggttg 577  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26359097 gaatggcgctgagcaattttgaagtactatcacttaccgctcaggtttatctccaaaataaaatttggttg 26359167  T

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Target: chr4 (Bit Score: 119; Significance: 2e-60; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 9 - 259
Target Start/End: Complemental strand, 53328844 - 53328594
Alignment:
Q  9 gcagtaaccgttttgcgacgagcatgttcagtgtaagtaacagcatcacgaataacattctcaagaaatatcttaagaacaccacgagtttcttcataga 108  Q
    |||||||| || || || |||||||| || ||||| || |||||||||||||| |||||||||||||| ||||| ||||| |||||||||||||||||||    
T  53328844 gcagtaacagtcttacggcgagcatgctctgtgtatgtgacagcatcacgaatcacattctcaagaaagatcttgagaacgccacgagtttcttcataga 53328745  T
Q  109 tcagaccactgatacgctttacaccaccacgccttgcaagacgacgaatcgcgggtttggtaattccctgaatgttatctcgaagaactttgcggtgacg 208  Q
    | |  |||||||||||||| ||||||||||| ||||| |||||||||||||| || || || |||||||| |||||||| || ||||| || ||||| ||    
T  53328744 ttaagccactgatacgcttcacaccaccacgtcttgcgagacgacgaatcgcaggctttgtgattccctggatgttatcgcgcagaaccttacggtgtcg 53328645  T
Q  209 cttagcaccaccctttcctaaaccttttcctccttttcctcttcctgacat 259  Q
     || || ||||||||||||||||| ||||||||||| ||||||||||||||    
T  53328644 tttcgctccaccctttcctaaaccctttcctcctttgcctcttcctgacat 53328594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 36 - 247
Target Start/End: Complemental strand, 22898656 - 22898445
Alignment:
Q  36 tcagtgtaagtaacagcatcacgaataacattctcaagaaatatcttaagaacaccacgagtttcttcatagatcagaccactgatacgctttacaccac 135  Q
    ||||||||||| |||||||| | ||| |||||||| | ||||||||| |  || ||||| || || ||||| |||| ||||||||||||||| || || |    
T  22898656 tcagtgtaagtcacagcatctctaatcacattctccaaaaatatcttcaacacgccacgtgtctcctcataaatcaaaccactgatacgcttcactcctc 22898557  T
Q  136 cacgccttgcaagacgacgaatcgcgggtttggtaattccctgaatgttatctcgaagaactttgcggtgacgcttagcaccaccctttcctaaaccttt 235  Q
    | |  |  ||||||||||||||||| || || || |||||||| ||||| || ||||| || || || || ||||| || ||||||||||| ||||| ||    
T  22898556 ctctacgagcaagacgacgaatcgctggctttgttattccctggatgttgtcacgaagcaccttacgatgtcgctttgctccaccctttcccaaaccctt 22898457  T
Q  236 tcctccttttcc 247  Q
    ||| ||||||||    
T  22898456 tccaccttttcc 22898445  T

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Target: chr4; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 36 - 247
Target Start/End: Complemental strand, 22950324 - 22950113
Alignment:
Q  36 tcagtgtaagtaacagcatcacgaataacattctcaagaaatatcttaagaacaccacgagtttcttcatagatcagaccactgatacgctttacaccac 135  Q
    ||||||||||| |||||||| | ||| |||||||| | ||||||||| |  || ||||| || || ||||| |||| ||||||||||||||| || || |    
T  22950324 tcagtgtaagtcacagcatctctaatcacattctccaaaaatatcttcaacacgccacgtgtctcctcataaatcaaaccactgatacgcttcactcctc 22950225  T
Q  136 cacgccttgcaagacgacgaatcgcgggtttggtaattccctgaatgttatctcgaagaactttgcggtgacgcttagcaccaccctttcctaaaccttt 235  Q
    | |  |  ||||||||||||||||| || || || |||||||| ||||| || ||||| || || || || ||||| || ||||||||||| ||||| ||    
T  22950224 ctctacgagcaagacgacgaatcgctggctttgttattccctggatgttgtcacgaagcaccttacgatgtcgctttgctccaccctttcccaaaccctt 22950125  T
Q  236 tcctccttttcc 247  Q
    ||| ||||||||    
T  22950124 tccaccttttcc 22950113  T

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Target: chr7 (Bit Score: 96; Significance: 9e-47; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 96; E-Value: 9e-47
Query Start/End: Original strand, 29 - 260
Target Start/End: Original strand, 39954917 - 39955148
Alignment:
Q  29 agcatgttcagtgtaagtaacagcatcacgaataacattctcaagaaatatcttaagaacaccacgagtttcttcatagatcagaccactgatacgcttt 128  Q
    |||||| |||||||||||||||||||||||||| |||||||||||||| ||||| |||||||| ||||| ||||| ||||| ||||| ||||| | |||     
T  39954917 agcatgctcagtgtaagtaacagcatcacgaatcacattctcaagaaagatcttgagaacaccgcgagtctcttcgtagatgagaccgctgattctcttc 39955016  T
Q  129 acaccaccacgccttgcaagacgacgaatcgcgggtttggtaattccctgaatgttatctcgaagaactttgcggtgacgcttagcaccaccctttccta 228  Q
    |||||||||||||||||||||||||||||||| || ||||| || || || ||||| || |||||||| || | ||| | ||| || || |||||||| |    
T  39955017 acaccaccacgccttgcaagacgacgaatcgcaggcttggttatgccttggatgttgtcgcgaagaacctttctgtgcctctttgctcctccctttccca 39955116  T
Q  229 aaccttttcctccttttcctcttcctgacatt 260  Q
    | || |||||||||||||| |  |||||||||    
T  39955117 atccctttcctccttttccacgacctgacatt 39955148  T

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Target: chr3 (Bit Score: 60; Significance: 3e-25; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 30 - 228
Target Start/End: Original strand, 21584670 - 21584868
Alignment:
Q  30 gcatgttcagtgtaagtaacagcatcacgaataacattctc-aagaaatatcttaagaacaccacgagtttcttcatagatcagaccactgatacgcttt 128  Q
    ||||| |||||||| ||||| ||||||||||| |||||||| |||||| ||||||||||| || |  ||||| ||||| |||| ||||||||| | |||     
T  21584670 gcatgctcagtgtacgtaaccgcatcacgaatcacattctccaagaaa-atcttaagaactcctcttgtttcctcataaatcaaaccactgattctctta 21584768  T
Q  129 acaccaccacgccttgcaagacgacgaatcgcgggtttggtaattccctgaatgttatctcgaagaactttgcggtgacgcttagcaccaccctttccta 228  Q
    |||||||| |  || || |  ||||||||||| || ||||| ||||||||||||||||| ||||||||||| | ||| | ||| ||||| ||||||||||    
T  21584769 acaccacctcttctcgccaatcgacgaatcgctggcttggtgattccctgaatgttatcacgaagaactttcctgtgtctctttgcacctccctttccta 21584868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 36 - 196
Target Start/End: Original strand, 24923539 - 24923699
Alignment:
Q  36 tcagtgtaagtaacagcatcacgaataacattctcaagaaatatcttaagaacaccacgagtttcttcatagatcagaccactgatacgctttacaccac 135  Q
    |||||||| || |||||||||||||| |||||||| |  || ||||| |  ||||| |  |||||||||||||||| ||||||||| | ||| |||||||    
T  24923539 tcagtgtatgtcacagcatcacgaatgacattctccaagaagatcttcaagacacctctggtttcttcatagatcaaaccactgattctcttaacaccac 24923638  T
Q  136 cacgccttgcaagacgacgaatcgcgggtttggtaattccctgaatgttatctcgaagaac 196  Q
    | |  ||||| |  |||||||| || || ||||| || ||||| |||||||| ||||||||    
T  24923639 ctcttcttgccaatcgacgaatagcaggcttggtgataccctggatgttatcacgaagaac 24923699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 36 - 260
Target Start/End: Complemental strand, 24982149 - 24981925
Alignment:
Q  36 tcagtgtaagtaacagcatcacgaataacattctcaagaaatatcttaagaacaccacgagtttcttcatagatcagaccactgatacgctttacaccac 135  Q
    |||||||| ||||| |||||||| || |||||||| |  || ||||| |  ||||| |  ||||||||||| |||| ||||||||| | ||| |||||||    
T  24982149 tcagtgtatgtaactgcatcacggatgacattctccaagaagatcttcaagacacctctggtttcttcatatatcaaaccactgattctcttaacaccac 24982050  T
Q  136 cacgccttgcaagacgacgaatcgcgggtttggtaattccctgaatgttatctcgaagaactttgcggtgacgcttagcaccaccctttcctaaaccttt 235  Q
    | |  ||||| |  |||||||| || || ||||| || ||||| |||||||| ||||||||||| |  || | ||| ||||| ||||||||||  || ||    
T  24982049 ctcttcttgccaatcgacgaatagcaggcttggtgataccctggatgttatcacgaagaactttcctatgcctctttgcacctccctttcctagtccctt 24981950  T
Q  236 tcctccttttcctcttcctgacatt 260  Q
     ||||||||||| |  |||||||||    
T  24981949 acctccttttccacgccctgacatt 24981925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 36 - 199
Target Start/End: Original strand, 24919965 - 24920128
Alignment:
Q  36 tcagtgtaagtaacagcatcacgaataacattctcaagaaatatcttaagaacaccacgagtttcttcatagatcagaccactgatacgctttacaccac 135  Q
    |||||||| || |||||||||||||| |||||||| |  || ||||| |  ||||| |  |||||||||||||||| ||| ||||| | ||| |||||||    
T  24919965 tcagtgtatgtcacagcatcacgaatgacattctctaagaagatcttcaagacacctctggtttcttcatagatcaaaccgctgattctcttcacaccac 24920064  T
Q  136 cacgccttgcaagacgacgaatcgcgggtttggtaattccctgaatgttatctcgaagaacttt 199  Q
    | |  ||||| |  |||||||| || || ||||| || ||||| |||||||| |||||||||||    
T  24920065 ctcttcttgccaatcgacgaattgcaggcttggtgataccctggatgttatcacgaagaacttt 24920128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 36 - 136
Target Start/End: Original strand, 31825636 - 31825736
Alignment:
Q  36 tcagtgtaagtaacagcatcacgaataacattctcaagaaatatcttaagaacaccacgagtttcttcatagatcagaccactgatacgctttacaccac 135  Q
    |||||||| || || |||||||| || |||||||| |  || ||||| |  ||||| | ||||||||||||||||| ||||||||| | ||| |||||||    
T  31825636 tcagtgtatgtgaccgcatcacggatgacattctccaagaagatcttcaagacacctctagtttcttcatagatcaaaccactgatcctcttcacaccac 31825735  T
Q  136 c 136  Q
    |    
T  31825736 c 31825736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 53; Significance: 4e-21; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 39 - 247
Target Start/End: Complemental strand, 41027672 - 41027464
Alignment:
Q  39 gtgtaagtaacagcatcacgaataacattctcaagaaatatcttaagaacaccacgagtttcttcatagatcagaccactgatacgctttacaccaccac 138  Q
    |||||||||||||||||||||||||||||||| | ||| ||||| |  || ||||| || ||||| ||||||| ||| || |||||||| || || || |    
T  41027672 gtgtaagtaacagcatcacgaataacattctccaaaaagatcttcaacacgccacgtgtctcttcgtagatcaaaccgcttatacgcttcactcctcctc 41027573  T
Q  139 gccttgcaagacgacgaatcgcgggtttggtaattccctgaatgttatctcgaagaactttgcggtgacgcttagcaccaccctttcctaaaccttttcc 238  Q
      | ||| | |||||||||||| || || |||||||| ||||||||||| ||||| || || ||||| || || || || |||||||| || || |||||    
T  41027572 tacgtgccaaacgacgaatcgcaggcttcgtaattccttgaatgttatcacgaagcaccttacggtgtcgttttgctcctccctttcccaatccctttcc 41027473  T
Q  239 tccttttcc 247  Q
     ||||||||    
T  41027472 accttttcc 41027464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 8 - 56
Target Start/End: Complemental strand, 30012144 - 30012096
Alignment:
Q  8 agcagtaaccgttttgcgacgagcatgttcagtgtaagtaacagcatca 56  Q
    |||||| || || ||||||||||| ||||||||||||||||||||||||    
T  30012144 agcagtcactgtcttgcgacgagcgtgttcagtgtaagtaacagcatca 30012096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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