View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2931R-Insertion-6 (Length: 549)
Name: NF2931R-Insertion-6
Description: NF2931R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2931R-Insertion-6 |
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Alignment Details
Target: chr2 (Bit Score: 188; Significance: 1e-101; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 188; E-Value: 1e-101
Query Start/End: Original strand, 327 - 539
Target Start/End: Original strand, 29672951 - 29673159
Alignment:
| Q |
327 |
aggaaaaggtagtgttgtttgaagtgagcatgagattttgctgttttgggagatagatcttttcttctttaaagtgattgaatttgatcttgaatctttg |
426 |
Q |
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| T |
29672951 |
aggaaaaggtagtgttgtttgaagtgagcatgagattttgttgttttgggagatagatcttttcttctttaaagtgattgaatttgatcttgaatctttg |
29673050 |
T |
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| Q |
427 |
aaaggagaagagtatgaagatgatgaaccaagtttggtgttaatccatgtgtttgatgaagccgttgatgttgccatagtgattataatagttagttatc |
526 |
Q |
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| T |
29673051 |
aaaggagaagagtatgaagatgatgaaccaagtttggtgttaatccatgtgtttgatgaagccgttgatgttgccatagtgatgataa----tagttatc |
29673146 |
T |
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| Q |
527 |
tattttgattctt |
539 |
Q |
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| T |
29673147 |
tattttgattctt |
29673159 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 9 - 191
Target Start/End: Original strand, 29672633 - 29672815
Alignment:
| Q |
9 |
gtaaacaccgtcaatgttggttgggattttgccggtaattggaagagattgggttaccgggtgttccggtactggggcgaagttaccggcaatttggaca |
108 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
29672633 |
gtaaacaccgtcaatgttggttgggattttgccggtaattggaagagattgggttaccgggtgttccggtactggggcgaagttaccggcaatttgaaca |
29672732 |
T |
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| Q |
109 |
cgtgggtcggaggtttttggtagtgggtgtttctgttcttgtttgattaaggttgtttcgacgaagtcaagggcggtggcggc |
191 |
Q |
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| T |
29672733 |
cgtgggtcggaggttttgggtagtgggtgtttttgttcttgtttgattaaggttgtttcgacgaagtcgagggcggtggcggc |
29672815 |
T |
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