View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2931R-Insertion-7 (Length: 536)
Name: NF2931R-Insertion-7
Description: NF2931R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2931R-Insertion-7 |
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| [»] chr7 (3 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 192; Significance: 1e-104; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 328 - 536
Target Start/End: Complemental strand, 44999350 - 44999146
Alignment:
| Q |
328 |
tagggctcacgaattggagtttatggatcaaattgtcctcagtggattgtggcaatggaggttcccatttctatataacgttctcacatttctttattta |
427 |
Q |
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| T |
44999350 |
tagggctcacgaattggagtttatggatcaaattgtcctcagtggattgtggcaatggaggttcccatttctatataacgttctcacattt----attta |
44999255 |
T |
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| Q |
428 |
tttattttttccttccttctatatatgattgtgttctattataattcataaacttgtttatgttgatgtatgtaggcttgttgcgcccatagcttggttt |
527 |
Q |
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| T |
44999254 |
tttattttttccttccttctatatatgattgtgttctattataattcataaacttgtttatgttgatgtatgtaggcttgttgcgcccatagcttggttt |
44999155 |
T |
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| Q |
528 |
gtgtgcctc |
536 |
Q |
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| T |
44999154 |
gtgtgcctc |
44999146 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 145 - 256
Target Start/End: Complemental strand, 44999520 - 44999409
Alignment:
| Q |
145 |
gtttggatcatatgtgtggaagacatataagcaagtttatgatgaagtcatgcatataggttcagctctacgtgcatctggtgctcaacatgtaagtgtt |
244 |
Q |
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| T |
44999520 |
gtttggatcatatgtgtggaagacatataagcaagtttatgatgaagtcatgcatataggttcagctctacgtgcatctggtgctcaacatgtaagtgtt |
44999421 |
T |
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| Q |
245 |
tgcaatgtaaaa |
256 |
Q |
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| T |
44999420 |
tgcaatgtaaaa |
44999409 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 9 - 111
Target Start/End: Complemental strand, 44999648 - 44999549
Alignment:
| Q |
9 |
gttgggatggcgtgaatttgttgatggaaaggtatttttatgatgacagtcagtccattttattttgtgtttatgtcatgtagactatatgacaaggaaa |
108 |
Q |
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| T |
44999648 |
gttgggatggcgtgaatttgttgatggaaaggtatttttatga---cagacagtccattttattttgtgtttatgtcatgtagactatatgacaaggaaa |
44999552 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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