View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2931R-Insertion-8 (Length: 490)

Name: NF2931R-Insertion-8
Description: NF2931R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2931R-Insertion-8
NF2931R-Insertion-8
[»] chr1 (52 HSPs)
chr1 (9-270)||(12097942-12098203)
chr1 (281-490)||(12097690-12097899)
chr1 (281-490)||(12095978-12096177)
chr1 (385-490)||(11429430-11429536)
chr1 (387-477)||(9419564-9419654)
chr1 (385-490)||(32849678-32849784)
chr1 (206-270)||(32847807-32847871)
chr1 (383-490)||(27524490-27524597)
chr1 (374-490)||(35381567-35381685)
chr1 (212-270)||(12095876-12095934)
chr1 (369-437)||(13223095-13223163)
chr1 (212-270)||(11431331-11431389)
chr1 (383-490)||(43883552-43883660)
chr1 (212-270)||(8323441-8323499)
chr1 (204-270)||(31809980-31810046)
chr1 (212-270)||(31815772-31815830)
chr1 (212-270)||(35383058-35383116)
chr1 (396-490)||(37402380-37402474)
chr1 (213-262)||(13222914-13222963)
chr1 (371-477)||(13229040-13229149)
chr1 (211-260)||(50315316-50315365)
chr1 (214-262)||(35381385-35381433)
chr1 (383-489)||(28253365-28253472)
chr1 (213-268)||(32849933-32849988)
chr1 (390-466)||(33753843-33753921)
chr1 (212-262)||(10708029-10708079)
chr1 (216-270)||(40767618-40767672)
chr1 (212-270)||(46605924-46605982)
chr1 (213-270)||(8322521-8322578)
chr1 (211-260)||(26734424-26734473)
chr1 (212-260)||(24437073-24437121)
chr1 (374-418)||(40767808-40767852)
chr1 (213-268)||(11429226-11429281)
chr1 (213-260)||(46604439-46604486)
chr1 (212-270)||(43883807-43883865)
chr1 (211-260)||(22684162-22684211)
chr1 (214-270)||(9626469-9626525)
chr1 (212-260)||(9627593-9627641)
chr1 (212-260)||(33753634-33753682)
chr1 (212-260)||(33755328-33755376)
chr1 (385-437)||(35382856-35382908)
chr1 (211-262)||(9419828-9419879)
chr1 (212-270)||(13229275-13229334)
chr1 (207-270)||(27524259-27524322)
chr1 (383-489)||(37401222-37401329)
chr1 (212-270)||(43882053-43882112)
chr1 (211-257)||(18604583-18604629)
chr1 (212-270)||(28251930-28251988)
chr1 (212-270)||(52793703-52793761)
chr1 (385-437)||(11431132-11431184)
chr1 (216-260)||(44268891-44268935)
chr1 (211-255)||(46652798-46652842)
[»] chr5 (14 HSPs)
chr5 (369-466)||(33489683-33489780)
chr5 (212-270)||(33489901-33489959)
chr5 (385-465)||(41282078-41282159)
chr5 (212-260)||(38624715-38624763)
chr5 (446-490)||(41284198-41284242)
chr5 (383-466)||(35931120-35931205)
chr5 (212-260)||(38626182-38626230)
chr5 (211-270)||(9672353-9672412)
chr5 (212-270)||(16308564-16308622)
chr5 (215-260)||(35931360-35931405)
chr5 (214-270)||(35929523-35929579)
chr5 (211-243)||(41281872-41281904)
chr5 (383-437)||(35929726-35929780)
chr5 (210-270)||(27756787-27756847)
[»] chr3 (46 HSPs)
chr3 (374-470)||(39870636-39870732)
chr3 (385-490)||(25529667-25529773)
chr3 (377-437)||(3149448-3149508)
chr3 (212-270)||(3026883-3026941)
chr3 (210-270)||(3150021-3150081)
chr3 (212-267)||(25529922-25529977)
chr3 (396-490)||(27361399-27361493)
chr3 (212-270)||(41081801-41081859)
chr3 (213-270)||(31795373-31795430)
chr3 (210-270)||(32558916-32558976)
chr3 (212-260)||(40499264-40499312)
chr3 (387-466)||(1677177-1677256)
chr3 (346-437)||(20340153-20340244)
chr3 (211-262)||(27662667-27662718)
chr3 (213-260)||(31796846-31796893)
chr3 (392-490)||(55198067-55198166)
chr3 (214-260)||(24612279-24612325)
chr3 (320-437)||(3026685-3026802)
chr3 (213-270)||(5377807-5377864)
chr3 (371-472)||(26537594-26537695)
chr3 (392-465)||(27329054-27329127)
chr3 (378-466)||(27662394-27662482)
chr3 (387-486)||(34594455-34594551)
chr3 (211-260)||(41083283-41083332)
chr3 (213-262)||(55196574-55196623)
chr3 (390-490)||(27320426-27320526)
chr3 (371-435)||(27661307-27661371)
chr3 (216-260)||(33781506-33781550)
chr3 (385-437)||(39871949-39872001)
chr3 (212-260)||(48566995-48567043)
chr3 (371-437)||(3149830-3149897)
chr3 (211-270)||(5387257-5387316)
chr3 (383-450)||(13645043-13645110)
chr3 (215-270)||(24613614-24613669)
chr3 (213-260)||(48568542-48568589)
chr3 (212-262)||(3025822-3025872)
chr3 (216-270)||(32615648-32615702)
chr3 (209-262)||(3149258-3149311)
chr3 (383-490)||(1678523-1678631)
chr3 (396-467)||(27319669-27319740)
chr3 (211-254)||(32559901-32559944)
chr3 (212-267)||(33551587-33551641)
chr3 (211-262)||(39870452-39870503)
chr3 (213-270)||(32613883-32613941)
chr3 (213-259)||(39872159-39872205)
chr3 (213-262)||(26537414-26537463)
[»] chr2 (39 HSPs)
chr2 (369-437)||(28167139-28167207)
chr2 (343-487)||(5694776-5694921)
chr2 (206-262)||(28167340-28167396)
chr2 (211-270)||(28165656-28165715)
chr2 (212-270)||(22054333-22054391)
chr2 (210-260)||(40303290-40303340)
chr2 (374-490)||(9261654-9261770)
chr2 (213-262)||(9262902-9262951)
chr2 (213-270)||(40304764-40304821)
chr2 (212-261)||(44906146-44906195)
chr2 (212-260)||(45499304-45499352)
chr2 (371-437)||(44904712-44904779)
chr2 (211-270)||(45493034-45493093)
chr2 (211-270)||(45500776-45500835)
chr2 (211-260)||(6844109-6844158)
chr2 (213-270)||(22060162-22060219)
chr2 (375-477)||(28165844-28165949)
chr2 (392-477)||(31559301-31559386)
chr2 (206-270)||(44097355-44097419)
chr2 (207-270)||(44820932-44820995)
chr2 (212-270)||(18224847-18224905)
chr2 (214-260)||(22060492-22060538)
chr2 (388-490)||(40127441-40127543)
chr2 (212-270)||(43516397-43516455)
chr2 (391-437)||(44905982-44906028)
chr2 (215-260)||(7317392-7317437)
chr2 (213-262)||(9261463-9261512)
chr2 (209-262)||(16288984-16289037)
chr2 (213-270)||(28563957-28564014)
chr2 (215-260)||(42928937-42928982)
chr2 (387-466)||(5696155-5696234)
chr2 (388-467)||(43517851-43517930)
chr2 (213-262)||(5696379-5696428)
chr2 (207-260)||(6842709-6842762)
chr2 (213-270)||(10343988-10344045)
chr2 (213-270)||(40128929-40128986)
chr2 (211-270)||(5694611-5694671)
chr2 (211-267)||(31557943-31557999)
chr2 (218-270)||(44904532-44904584)
[»] chr7 (37 HSPs)
chr7 (374-437)||(38758130-38758193)
chr7 (211-270)||(38758319-38758378)
chr7 (385-490)||(37556281-37556387)
chr7 (369-466)||(19639753-19639850)
chr7 (212-270)||(32429872-32429930)
chr7 (383-460)||(44815886-44815963)
chr7 (381-437)||(30045976-30046032)
chr7 (211-270)||(37547932-37547991)
chr7 (211-270)||(46246577-46246636)
chr7 (388-490)||(41592954-41593056)
chr7 (210-270)||(706740-706800)
chr7 (207-262)||(708162-708217)
chr7 (213-260)||(46245122-46245169)
chr7 (212-270)||(12178482-12178540)
chr7 (374-477)||(38756847-38756953)
chr7 (211-260)||(27162007-27162056)
chr7 (213-270)||(38756655-38756712)
chr7 (383-466)||(27160506-27160592)
chr7 (212-268)||(37556536-37556592)
chr7 (211-270)||(13420288-13420347)
chr7 (211-270)||(27160303-27160362)
chr7 (211-270)||(41385811-41385870)
chr7 (216-270)||(37350206-37350260)
chr7 (388-490)||(41384355-41384457)
chr7 (212-270)||(41591514-41591572)
chr7 (216-270)||(44816108-44816162)
chr7 (213-270)||(41593205-41593262)
chr7 (383-450)||(5975456-5975523)
chr7 (213-260)||(11669841-11669888)
chr7 (212-259)||(30045787-30045834)
chr7 (383-466)||(27161768-27161853)
chr7 (213-267)||(37348735-37348789)
chr7 (212-270)||(41384148-41384206)
chr7 (375-408)||(19638722-19638755)
chr7 (211-255)||(28848556-28848600)
chr7 (212-260)||(37133661-37133709)
chr7 (211-255)||(43546747-43546791)
[»] chr4 (30 HSPs)
chr4 (369-437)||(11148528-11148596)
chr4 (211-270)||(2671539-2671598)
chr4 (211-262)||(11148348-11148399)
chr4 (374-477)||(34538313-34538419)
chr4 (369-437)||(34539612-34539679)
chr4 (212-270)||(4906128-4906186)
chr4 (213-270)||(4931998-4932055)
chr4 (383-490)||(2672713-2672821)
chr4 (212-260)||(4933343-4933391)
chr4 (210-270)||(22307668-22307728)
chr4 (212-260)||(29756271-29756319)
chr4 (387-466)||(2671736-2671815)
chr4 (213-260)||(4907473-4907520)
chr4 (211-270)||(29757610-29757669)
chr4 (216-270)||(22309140-22309194)
chr4 (214-260)||(33609356-33609402)
chr4 (208-262)||(34538121-34538175)
chr4 (211-260)||(23703875-23703924)
chr4 (215-260)||(35786692-35786737)
chr4 (441-490)||(20947364-20947413)
chr4 (212-261)||(34539809-34539857)
chr4 (216-260)||(33607471-33607515)
chr4 (211-262)||(2672973-2673024)
chr4 (211-262)||(20945859-20945910)
chr4 (215-262)||(28426836-28426883)
chr4 (212-258)||(20947606-20947652)
chr4 (214-260)||(23702398-23702444)
chr4 (215-260)||(22674154-22674199)
chr4 (210-270)||(19994495-19994555)
chr4 (216-260)||(39665274-39665318)
[»] chr8 (18 HSPs)
chr8 (209-270)||(357973-358034)
chr8 (210-270)||(7272897-7272957)
chr8 (343-490)||(7273061-7273209)
chr8 (210-270)||(39886078-39886138)
chr8 (212-270)||(39884615-39884673)
chr8 (207-262)||(17706159-17706214)
chr8 (212-262)||(7274661-7274711)
chr8 (212-270)||(36899897-36899955)
chr8 (209-270)||(3158039-3158100)
chr8 (212-260)||(359326-359374)
chr8 (389-477)||(44690247-44690334)
chr8 (387-466)||(7274437-7274516)
chr8 (213-260)||(45448504-45448551)
chr8 (214-260)||(21142480-21142526)
chr8 (212-262)||(45447004-45447054)
chr8 (210-270)||(17707450-17707510)
chr8 (211-262)||(36901187-36901238)
chr8 (212-267)||(25562790-25562846)
[»] chr6 (12 HSPs)
chr6 (371-487)||(1134328-1134443)
chr6 (208-270)||(7796744-7796806)
chr6 (212-260)||(843533-843581)
chr6 (212-270)||(11065656-11065714)
chr6 (388-437)||(28050144-28050193)
chr6 (204-270)||(1443408-1443474)
chr6 (213-270)||(842186-842243)
chr6 (211-260)||(19597989-19598038)
chr6 (211-270)||(19402124-19402183)
chr6 (206-260)||(28048973-28049027)
chr6 (216-270)||(30321166-30321220)
chr6 (212-260)||(19596342-19596390)
[»] scaffold0129 (1 HSPs)
scaffold0129 (211-270)||(4259-4318)
[»] scaffold0517 (2 HSPs)
scaffold0517 (396-490)||(5602-5696)
scaffold0517 (383-489)||(6747-6854)
[»] scaffold0280 (1 HSPs)
scaffold0280 (211-270)||(12129-12188)
[»] scaffold0060 (1 HSPs)
scaffold0060 (211-260)||(13263-13312)
[»] scaffold1118 (1 HSPs)
scaffold1118 (224-260)||(2423-2459)


Alignment Details
Target: chr1 (Bit Score: 230; Significance: 1e-127; HSPs: 52)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 9 - 270
Target Start/End: Complemental strand, 12098203 - 12097942
Alignment:
Q  9 atttcctcaacccaacctaattactaatcctctaccccattcatataaaccaaatccataatgataatgaatctaaaaatcctaatttgagagaaaaatg 108  Q
    ||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12098203 atttcctcatcccaacctaattactaatcctctacctcattcatataaaccaaatccataatgataatgaatctaaaaatcctaatttgagagaaaaatg 12098104  T
Q  109 atgaaattgattgacgtcttacgaattcaaagatgcttttgcatatttgtaaatttaaagcaataaagtgatagacaatttcgtaatttactcagttaat 208  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||    
T  12098103 atgaaattgattgacgtcttacgaatttaaagatgcttttgcatatttgtaaatttaaagcaataaaatgatagacaatttcgtaatttactcagtgaat 12098004  T
Q  209 aataggcttaaataagtaaaaggtccctgtaagttcgcgcgtttttggttttagcccctgta 270  Q
    ||||||||||||||||||||||||||| |||||||||||| ||||||||||||| |||||||    
T  12098003 aataggcttaaataagtaaaaggtccccgtaagttcgcgcatttttggttttagtccctgta 12097942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 170; E-Value: 5e-91
Query Start/End: Original strand, 281 - 490
Target Start/End: Complemental strand, 12097899 - 12097690
Alignment:
Q  281 ttgcaaatagtccctaccgtgaggatccgtnnnnnnnncgcatcgctggctaacggacaccgacgtggcatttggtgagttgtcaattgttgacaactgg 380  Q
    |||||||||||||||||||||| |||||||        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12097899 ttgcaaatagtccctaccgtgatgatccgtaaaaaaaacgcatcgctggctaacggacaccgacgtggcatttggtgagttgtcaattgttgacaactgg 12097800  T
Q  381 tcttagtagagggactaaaaccaaaaacgcatttttacgtagggatgaaattaaaaatcttaattatcaatttttgaattttaaaaaccaatctttcttt 480  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||    
T  12097799 tcttagtagagggactaaaaccaaaaacgcatttttaggtagggatgaaattaaaaaacttaattatcaatttttgaattttaaaaaccaacctttcttt 12097700  T
Q  481 cttcttcctc 490  Q
    ||||||||||    
T  12097699 cttcttcctc 12097690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 281 - 490
Target Start/End: Original strand, 12095978 - 12096177
Alignment:
Q  281 ttgcaaatagtccctaccgtgaggatccgtnnnnnnnncgcatcgctggctaacggacaccgacgtggcatttggtgagttgtcaattgttgacaactgg 380  Q
    ||||||||||||||||| ||||||||||||         |||| ||||||||||||||||| |||||||||||||||||||| ||||||          |    
T  12095978 ttgcaaatagtccctactgtgaggatccgtcaaaaaaatgcatagctggctaacggacaccaacgtggcatttggtgagttggcaattg----------g 12096067  T
Q  381 tcttagtagagggactaaaaccaaaaacgcatttttacgtagggatgaaattaaaaatcttaattatcaatttttgaattttaaaaaccaatctttcttt 480  Q
     |||||||||| ||||||||||||||||||||||||||   |||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||    
T  12096068 acttagtagagtgactaaaaccaaaaacgcatttttacacggggatgaaattaaaaaacttaattatcaatttttgaattttaaaaaccaatcttttttt 12096167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 385 - 490
Target Start/End: Original strand, 11429430 - 11429536
Alignment:
Q  385 agtagagggactaaaaccaaaaacgcatttttacgtagggatgaaattaaaaatct-taattatcaatttttgaattttaaaaaccaatctttctttctt 483  Q
    ||||||||||||||||||||||||| ||||||||  ||||||| |||||||||  | |||  ||||||||||||||||||||||||| |||||| |||||    
T  11429430 agtagagggactaaaaccaaaaacgtatttttacacagggatgtaattaaaaaaatgtaaacatcaatttttgaattttaaaaaccactctttccttctt 11429529  T
Q  484 cttcctc 490  Q
    |||||||    
T  11429530 cttcctc 11429536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 387 - 477
Target Start/End: Complemental strand, 9419654 - 9419564
Alignment:
Q  387 tagagggactaaaaccaaaaacgcatttttacgtagggatgaaattaaaaatcttaattatcaatttttgaattttaaaaaccaatctttc 477  Q
    |||||||| |||||||||||||| || ||||| |||||||||||||||||| | |||| ||||| ||||||| ||||||||||||||||||    
T  9419654 tagagggaataaaaccaaaaacgaatatttacatagggatgaaattaaaaaacgtaatcatcaaattttgaaatttaaaaaccaatctttc 9419564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 385 - 490
Target Start/End: Complemental strand, 32849784 - 32849678
Alignment:
Q  385 agtagagggactaaaaccaaaaacgcatttttacgtagggatgaaatt-aaaaatcttaattatcaatttttgaattttaaaaaccaatctttctttctt 483  Q
    ||||||||||||||||||||||||| ||||||||  ||||||| |||| ||||| | |||  ||||||||||||||||||||||||| | |||| |||||    
T  32849784 agtagagggactaaaaccaaaaacgtatttttacacagggatgtaattaaaaaaacgtaaacatcaatttttgaattttaaaaaccactttttccttctt 32849685  T
Q  484 cttcctc 490  Q
    |||||||    
T  32849684 cttcctc 32849678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 206 - 270
Target Start/End: Original strand, 32847807 - 32847871
Alignment:
Q  206 aataataggcttaaataagtaaaaggtccctgtaagttcgcgcgtttttggttttagcccctgta 270  Q
    ||||| |||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||    
T  32847807 aataaaaggcttaaataagtaaaaggtccctgtaagttggcgcgtttttggttttagtccctgta 32847871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 383 - 490
Target Start/End: Original strand, 27524490 - 27524597
Alignment:
Q  383 ttagtagagggactaaaaccaaaaacgcatttttacgtagggatgaaattaaaaatcttaattatcaatttttgaattttaaaaaccaatctttctttct 482  Q
    |||||| ||||||||||||||||||| ||  ||||| ||||||||||||| |||| | |||  ||||| |||||||||||||||||||| |||||  |||    
T  27524490 ttagtacagggactaaaaccaaaaacacaaatttacatagggatgaaatttaaaaacgtaaacatcaaattttgaattttaaaaaccaaactttccatct 27524589  T
Q  483 tcttcctc 490  Q
    ||||||||    
T  27524590 tcttcctc 27524597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 374 - 490
Target Start/End: Original strand, 35381567 - 35381685
Alignment:
Q  374 caactggtcttagtagagggactaaaaccaaaaacgcatttttacgtagggatgaaattaaaaatcttaattatcaatttttgaattttaaaaac--caa 471  Q
    |||||||| | | ||||| |||||||| |||||||| |||||||| |||||||| |||||||||   |||| |||||||||||||||||||||||  ||     
T  35381567 caactggtttaattagagagactaaaagcaaaaacgtatttttacatagggatgtaattaaaaaatgtaatcatcaatttttgaattttaaaaaccacac 35381666  T
Q  472 tctttctttcttcttcctc 490  Q
    |||||| ||||||||||||    
T  35381667 tctttccttcttcttcctc 35381685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 212 - 270
Target Start/End: Original strand, 12095876 - 12095934
Alignment:
Q  212 aggcttaaataagtaaaaggtccctgtaagttcgcgcgtttttggttttagcccctgta 270  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||    
T  12095876 aggcttaaataagtaaaaggtccctgtaagttcgtgcgtttttggttttagtccctgta 12095934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 369 - 437
Target Start/End: Original strand, 13223095 - 13223163
Alignment:
Q  369 gttgacaactggtcttagtagagggactaaaaccaaaaacgcatttttacgtagggatgaaattaaaaa 437  Q
    |||| ||||| || |||||||||||||||||||||||||||||||||||| |||||| |||||||||||    
T  13223095 gttggcaactagtgttagtagagggactaaaaccaaaaacgcatttttacatagggacgaaattaaaaa 13223163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 212 - 270
Target Start/End: Complemental strand, 11431389 - 11431331
Alignment:
Q  212 aggcttaaataagtaaaaggtccctgtaagttcgcgcgtttttggttttagcccctgta 270  Q
    |||||||||||||||||||||||||||||||| |||||||||| ||||||| |||||||    
T  11431389 aggcttaaataagtaaaaggtccctgtaagttggcgcgtttttcgttttagtccctgta 11431331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 383 - 490
Target Start/End: Complemental strand, 43883660 - 43883552
Alignment:
Q  383 ttagtagagggactaaaaccaaaaacgcatttttacgtagggatgaaattaaaaat-cttaattatcaatttttgaattttaaaaaccaatctttctttc 481  Q
    |||||| |||||||||||||||||||||| ||| || ||||||  || |||||||  | |||| |||||||||| ||||| |||||||| |||||| |||    
T  43883660 ttagtacagggactaaaaccaaaaacgcaatttaacatagggactaatttaaaaaaacgtaatcatcaatttttaaatttaaaaaaccagtctttccttc 43883561  T
Q  482 ttcttcctc 490  Q
    |||||||||    
T  43883560 ttcttcctc 43883552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 212 - 270
Target Start/End: Complemental strand, 8323499 - 8323441
Alignment:
Q  212 aggcttaaataagtaaaaggtccctgtaagttcgcgcgtttttggttttagcccctgta 270  Q
    ||||||||||| ||||||||||||||||||||||||| ||||||||||| | |||||||    
T  8323499 aggcttaaatatgtaaaaggtccctgtaagttcgcgcatttttggttttcgtccctgta 8323441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 204 - 270
Target Start/End: Original strand, 31809980 - 31810046
Alignment:
Q  204 ttaataataggcttaaataagtaaaaggtccctgtaagttcgcgcgtttttggttttagcccctgta 270  Q
    ||||||| ||||||||||| ||||||||||||||||||||||||| ||||| ||||| | |||||||    
T  31809980 ttaataaaaggcttaaatatgtaaaaggtccctgtaagttcgcgcattttttgttttcgtccctgta 31810046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 212 - 270
Target Start/End: Complemental strand, 31815830 - 31815772
Alignment:
Q  212 aggcttaaataagtaaaaggtccctgtaagttcgcgcgtttttggttttagcccctgta 270  Q
    ||||||||||| ||||||||||||||||||||||||| ||||||||||| | |||||||    
T  31815830 aggcttaaatatgtaaaaggtccctgtaagttcgcgcatttttggttttcgtccctgta 31815772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 212 - 270
Target Start/End: Complemental strand, 35383116 - 35383058
Alignment:
Q  212 aggcttaaataagtaaaaggtccctgtaagttcgcgcgtttttggttttagcccctgta 270  Q
    ||||||||||||||||||||||||  |||||| |||||||||||||||||| |||||||    
T  35383116 aggcttaaataagtaaaaggtcccgataagttggcgcgtttttggttttagtccctgta 35383058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 396 - 490
Target Start/End: Complemental strand, 37402474 - 37402380
Alignment:
Q  396 taaaaccaaaaacgcatttttacgtagggatgaaattaaaaatcttaattatcaatttttgaattttaaaaaccaatctttctttcttcttcctc 490  Q
    |||||||||||| |||  ||||| |||||||||||||||||| | |||  ||||| |||||||||||||||||||| || ||  |||||||||||    
T  37402474 taaaaccaaaaatgcaaatttacatagggatgaaattaaaaaacgtaaaaatcaaattttgaattttaaaaaccaaactgtccatcttcttcctc 37402380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 213 - 262
Target Start/End: Original strand, 13222914 - 13222963
Alignment:
Q  213 ggcttaaataagtaaaaggtccctgtaagttcgcgcgtttttggttttag 262  Q
    ||||||||||||||||||||||||||||||| || |||||||||||||||    
T  13222914 ggcttaaataagtaaaaggtccctgtaagttagcacgtttttggttttag 13222963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 371 - 477
Target Start/End: Complemental strand, 13229149 - 13229040
Alignment:
Q  371 tgacaactggtcttagtagagggactaaaaccaaaaacgcatttttacgtaggga-tgaaatt-aaaaatcttaattatcaa-tttttgaattttaaaaa 467  Q
    ||||||||| ||||||||||||||||||||| |||||| ||||||||| |||||| | ||||| ||||| | |||| ||||| |||||||| ||| |||     
T  13229149 tgacaactgctcttagtagagggactaaaacgaaaaacacatttttacatagggactaaaattaaaaaaacgtaatcatcaattttttgaaattttaaac 13229050  T
Q  468 ccaatctttc 477  Q
    ||||||||||    
T  13229049 ccaatctttc 13229040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 211 - 260
Target Start/End: Original strand, 50315316 - 50315365
Alignment:
Q  211 taggcttaaataagtaaaaggtccctgtaagttcgcgcgtttttggtttt 260  Q
    |||||||||||| |||||||||||||||||||||||| ||||||||||||    
T  50315316 taggcttaaatatgtaaaaggtccctgtaagttcgcgtgtttttggtttt 50315365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 214 - 262
Target Start/End: Original strand, 35381385 - 35381433
Alignment:
Q  214 gcttaaataagtaaaaggtccctgtaagttcgcgcgtttttggttttag 262  Q
    ||||||||||||||||||| |||||||||| ||||||||||||||||||    
T  35381385 gcttaaataagtaaaaggtacctgtaagttggcgcgtttttggttttag 35381433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 383 - 489
Target Start/End: Complemental strand, 28253472 - 28253365
Alignment:
Q  383 ttagtagagggactaaaaccaaaaacgcatttttacgtagggatgaaattaaaaatct-taattatcaatttttgaattttaaaaaccaatctttctttc 481  Q
    |||||||||||||||||| |||||||| |  ||||| ||||||||||||||||||    |||  ||||| |||||||||||||||||||| ||||   ||    
T  28253472 ttagtagagggactaaaatcaaaaacgtaaatttacatagggatgaaattaaaaaaaggtaaacatcaaattttgaattttaaaaaccaaacttttcatc 28253373  T
Q  482 ttcttcct 489  Q
    ||||||||    
T  28253372 ttcttcct 28253365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 213 - 268
Target Start/End: Complemental strand, 32849988 - 32849933
Alignment:
Q  213 ggcttaaataagtaaaaggtccctgtaagttcgcgcgtttttggttttagcccctg 268  Q
    |||||||||||||||||||||||||||| || |||||||||| ||||||| |||||    
T  32849988 ggcttaaataagtaaaaggtccctgtaaattggcgcgttttttgttttagtccctg 32849933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 390 - 466
Target Start/End: Original strand, 33753843 - 33753921
Alignment:
Q  390 agggactaaaaccaaaaacgcatttttacgtagggatgaaatta--aaaatcttaattatcaatttttgaattttaaaa 466  Q
    ||||||||||||||||||||||||||||| ||||||  ||||||  |||| | ||||  ||||||||||||||||||||    
T  33753843 agggactaaaaccaaaaacgcatttttacatagggactaaattaagaaaaacgtaatcttcaatttttgaattttaaaa 33753921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 212 - 262
Target Start/End: Original strand, 10708029 - 10708079
Alignment:
Q  212 aggcttaaataagtaaaaggtccctgtaagttcgcgcgtttttggttttag 262  Q
    ||||||||||| |||||| ||||||||||||||||| ||||||||||||||    
T  10708029 aggcttaaatatgtaaaaagtccctgtaagttcgcgtgtttttggttttag 10708079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 216 - 270
Target Start/End: Original strand, 40767618 - 40767672
Alignment:
Q  216 ttaaataagtaaaaggtccctgtaagttcgcgcgtttttggttttagcccctgta 270  Q
    ||||||| |||||||||| ||||||||| |||||||||||||||||| |||||||    
T  40767618 ttaaatatgtaaaaggtctctgtaagtttgcgcgtttttggttttagtccctgta 40767672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 212 - 270
Target Start/End: Complemental strand, 46605982 - 46605924
Alignment:
Q  212 aggcttaaataagtaaaaggtccctgtaagttcgcgcgtttttggttttagcccctgta 270  Q
    ||||||||||||| |||||||||||| |||| ||||||||||| ||||||| |||||||    
T  46605982 aggcttaaataagaaaaaggtccctgaaagtccgcgcgttttttgttttagtccctgta 46605924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 213 - 270
Target Start/End: Original strand, 8322521 - 8322578
Alignment:
Q  213 ggcttaaataagtaaaaggtccctgtaagttcgcgcgtttttggttttagcccctgta 270  Q
    |||||||||| ||||||||||||||||||||||||| ||||| ||||| | |||||||    
T  8322521 ggcttaaatatgtaaaaggtccctgtaagttcgcgcattttttgttttcgtccctgta 8322578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 211 - 260
Target Start/End: Original strand, 26734424 - 26734473
Alignment:
Q  211 taggcttaaataagtaaaaggtccctgtaagttcgcgcgtttttggtttt 260  Q
    |||||||||||| ||||||||||| ||||||||||||| |||||||||||    
T  26734424 taggcttaaatatgtaaaaggtccatgtaagttcgcgcatttttggtttt 26734473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 212 - 260
Target Start/End: Original strand, 24437073 - 24437121
Alignment:
Q  212 aggcttaaataagtaaaaggtccctgtaagttcgcgcgtttttggtttt 260  Q
    ||||||||||| |||||||||||||||||||||||| |||||| |||||    
T  24437073 aggcttaaatatgtaaaaggtccctgtaagttcgcgtgttttttgtttt 24437121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 374 - 418
Target Start/End: Original strand, 40767808 - 40767852
Alignment:
Q  374 caactggtcttagtagagggactaaaaccaaaaacgcatttttac 418  Q
    |||||| ||||||||||||||||||||| ||||||||||||||||    
T  40767808 caactgctcttagtagagggactaaaacgaaaaacgcatttttac 40767852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 213 - 268
Target Start/End: Original strand, 11429226 - 11429281
Alignment:
Q  213 ggcttaaataagtaaaaggtccctgtaagttcgcgcgtttttggttttagcccctg 268  Q
    ||||||||||||||||||||| |||||| || |||||||||| ||||||| |||||    
T  11429226 ggcttaaataagtaaaaggtctctgtaaattggcgcgttttttgttttagtccctg 11429281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 213 - 260
Target Start/End: Original strand, 46604439 - 46604486
Alignment:
Q  213 ggcttaaataagtaaaaggtccctgtaagttcgcgcgtttttggtttt 260  Q
    |||||||||| |||||||||||||||||||| ||| ||||||||||||    
T  46604439 ggcttaaatatgtaaaaggtccctgtaagtttgcgtgtttttggtttt 46604486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 212 - 270
Target Start/End: Complemental strand, 43883865 - 43883807
Alignment:
Q  212 aggcttaaataagtaaaaggtccctgtaagttcgcgcgtttttggttttagcccctgta 270  Q
    ||||||||||||||||||||||| |||||||| | || ||||| ||||||| |||||||    
T  43883865 aggcttaaataagtaaaaggtccatgtaagttggtgcattttttgttttagtccctgta 43883807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 211 - 260
Target Start/End: Complemental strand, 22684211 - 22684162
Alignment:
Q  211 taggcttaaataagtaaaaggtccctgtaagttcgcgcgtttttggtttt 260  Q
    ||||||| |||| ||||||||||| |||||||||||| ||||||||||||    
T  22684211 taggctttaatatgtaaaaggtccttgtaagttcgcgtgtttttggtttt 22684162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 214 - 270
Target Start/End: Original strand, 9626469 - 9626525
Alignment:
Q  214 gcttaaataagtaaaaggtccctgtaagttcgcgcgtttttggttttagcccctgta 270  Q
    ||||||||| ||||||||||||||||||||||||  ||||| ||||| | |||||||    
T  9626469 gcttaaatatgtaaaaggtccctgtaagttcgcgtattttttgttttcgtccctgta 9626525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 212 - 260
Target Start/End: Complemental strand, 9627641 - 9627593
Alignment:
Q  212 aggcttaaataagtaaaaggtccctgtaagttcgcgcgtttttggtttt 260  Q
    ||||||||||| |||||||||| |||||||||||||| ||||| |||||    
T  9627641 aggcttaaatatgtaaaaggtctctgtaagttcgcgcattttttgtttt 9627593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 212 - 260
Target Start/End: Original strand, 33753634 - 33753682
Alignment:
Q  212 aggcttaaataagtaaaaggtccctgtaagttcgcgcgtttttggtttt 260  Q
    ||||||| ||| |||||||||||||||||||||||| | ||||||||||    
T  33753634 aggcttacataggtaaaaggtccctgtaagttcgcgagattttggtttt 33753682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 212 - 260
Target Start/End: Complemental strand, 33755376 - 33755328
Alignment:
Q  212 aggcttaaataagtaaaaggtccctgtaagttcgcgcgtttttggtttt 260  Q
    ||||||||||||||||||||||| |||||||||| | | ||||||||||    
T  33755376 aggcttaaataagtaaaaggtccttgtaagttcgtgagattttggtttt 33755328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #41
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 385 - 437
Target Start/End: Complemental strand, 35382908 - 35382856
Alignment:
Q  385 agtagagggactaaaaccaaaaacgcatttttacgtagggatgaaattaaaaa 437  Q
    ||||||||||||||||||||| ||  |||||||| |||||||| |||||||||    
T  35382908 agtagagggactaaaaccaaatacatatttttacatagggatgtaattaaaaa 35382856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #42
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 211 - 262
Target Start/End: Complemental strand, 9419879 - 9419828
Alignment:
Q  211 taggcttaaataagtaaaaggtccctgtaagttcgcgcgtttttggttttag 262  Q
    |||||||||||| ||||||||||| |||||||| ||| ||||||| ||||||    
T  9419879 taggcttaaatatgtaaaaggtccttgtaagttggcgtgtttttgcttttag 9419828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #43
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 212 - 270
Target Start/End: Complemental strand, 13229334 - 13229275
Alignment:
Q  212 aggcttaaataagtaaaaggtccctgtaagttcgcgcg-tttttggttttagcccctgta 270  Q
    ||||||||||| | |||||||||||||||||| ||||| ||||||||||||  |||||||    
T  13229334 aggcttaaatatgcaaaaggtccctgtaagttagcgcgttttttggttttaatccctgta 13229275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #44
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 207 - 270
Target Start/End: Original strand, 27524259 - 27524322
Alignment:
Q  207 ataataggcttaaataagtaaaaggtccctgtaagttcgcgcgtttttggttttagcccctgta 270  Q
    |||||||||||||||| ||||||||||||| ||| || |||| ||||| ||||| | |||||||    
T  27524259 ataataggcttaaatatgtaaaaggtccctataatttagcgcattttttgtttttgtccctgta 27524322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #45
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 383 - 489
Target Start/End: Original strand, 37401222 - 37401329
Alignment:
Q  383 ttagtagagggactaaaacc-aaaaacgcatttttacgtagggatgaaattaaaaatcttaattatcaatttttgaattttaaaaaccaatctttctttc 481  Q
    |||||| ||||||||||||| |||||| ||  ||||| |||||||||| |||||||   |||  ||||| |||||| ||||||||||||| ||||   ||    
T  37401222 ttagtacagggactaaaaccaaaaaacacaaatttacatagggatgaagttaaaaaaggtaaacatcaaattttgatttttaaaaaccaaacttttcatc 37401321  T
Q  482 ttcttcct 489  Q
    ||||||||    
T  37401322 ttcttcct 37401329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #46
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 212 - 270
Target Start/End: Original strand, 43882053 - 43882112
Alignment:
Q  212 aggcttaaataagtaaaaggtccct-gtaagttcgcgcgtttttggttttagcccctgta 270  Q
    ||||||||||||| |||| | |||| |||||||||||| ||||||||||||| |||||||    
T  43882053 aggcttaaataagaaaaaaggcccttgtaagttcgcgcttttttggttttagtccctgta 43882112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #47
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 211 - 257
Target Start/End: Complemental strand, 18604629 - 18604583
Alignment:
Q  211 taggcttaaataagtaaaaggtccctgtaagttcgcgcgtttttggt 257  Q
    |||||||||||| ||||||| |||||||||||||||| | |||||||    
T  18604629 taggcttaaatatgtaaaagatccctgtaagttcgcgtgcttttggt 18604583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #48
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 212 - 270
Target Start/End: Original strand, 28251930 - 28251988
Alignment:
Q  212 aggcttaaataagtaaaaggtccctgtaagttcgcgcgtttttggttttagcccctgta 270  Q
    ||||||||||| | ||||||||||||||| || |||| ||||||||||| | |||||||    
T  28251930 aggcttaaatatgcaaaaggtccctgtaatttagcgcatttttggttttcgtccctgta 28251988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #49
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 212 - 270
Target Start/End: Original strand, 52793703 - 52793761
Alignment:
Q  212 aggcttaaataagtaaaaggtccctgtaagttcgcgcgtttttggttttagcccctgta 270  Q
    ||||||||||| || |||||||||||||||||||| | ||||| ||||| | |||||||    
T  52793703 aggcttaaatatgttaaaggtccctgtaagttcgctcattttttgttttcgtccctgta 52793761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #50
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 385 - 437
Target Start/End: Complemental strand, 11431184 - 11431132
Alignment:
Q  385 agtagagggactaaaaccaaaaacgcatttttacgtagggatgaaattaaaaa 437  Q
    |||||| |||||||||||||||| | ||||||||  ||||||| |||||||||    
T  11431184 agtagaaggactaaaaccaaaaaagaatttttacacagggatgtaattaaaaa 11431132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #51
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 216 - 260
Target Start/End: Original strand, 44268891 - 44268935
Alignment:
Q  216 ttaaataagtaaaaggtccctgtaagttcgcgcgtttttggtttt 260  Q
    ||||||| |||||  ||||||||||||||||| ||||||||||||    
T  44268891 ttaaatatgtaaatcgtccctgtaagttcgcgtgtttttggtttt 44268935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #52
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 211 - 255
Target Start/End: Complemental strand, 46652842 - 46652798
Alignment:
Q  211 taggcttaaataagtaaaaggtccctgtaagttcgcgcgtttttg 255  Q
    |||||||||||| |||||| |||||||||| |||||| |||||||    
T  46652842 taggcttaaatatgtaaaacgtccctgtaatttcgcgtgtttttg 46652798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 58; Significance: 3e-24; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 369 - 466
Target Start/End: Complemental strand, 33489780 - 33489683
Alignment:
Q  369 gttgacaactggtcttagtagagggactaaaaccaaaaacgcatttttacgtagggatgaaattaaaaatcttaattatcaatttttgaattttaaaa 466  Q
    |||| ||||||||||||||||||||||||| ||||||||||||||||||| |||||| | ||||||||| | |||| ||||| ||||||| |||||||    
T  33489780 gttggcaactggtcttagtagagggactaataccaaaaacgcatttttacatagggacggaattaaaaaacataatcatcaaattttgaaatttaaaa 33489683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 212 - 270
Target Start/End: Complemental strand, 33489959 - 33489901
Alignment:
Q  212 aggcttaaataagtaaaaggtccctgtaagttcgcgcgtttttggttttagcccctgta 270  Q
    |||||||||||||||||| ||||||||||||| |||||||||| ||||||| |||||||    
T  33489959 aggcttaaataagtaaaatgtccctgtaagttagcgcgtttttcgttttagtccctgta 33489901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 385 - 465
Target Start/End: Original strand, 41282078 - 41282159
Alignment:
Q  385 agtagagggactaaaaccaaaaacgcatttttacgtagggatgaaatt-aaaaatcttaattatcaatttttgaattttaaa 465  Q
    |||| |||||||||||||||||||| ||||||||  ||||||| |||| ||||| |||||  ||||||||||||||||||||    
T  41282078 agtacagggactaaaaccaaaaacgtatttttacacagggatgtaattaaaaaaacttaaacatcaatttttgaattttaaa 41282159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 212 - 260
Target Start/End: Original strand, 38624715 - 38624763
Alignment:
Q  212 aggcttaaataagtaaaaggtccctgtaagttcgcgcgtttttggtttt 260  Q
    ||||||||||| |||||||||||||||||||||||| ||||||||||||    
T  38624715 aggcttaaatatgtaaaaggtccctgtaagttcgcgtgtttttggtttt 38624763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 446 - 490
Target Start/End: Complemental strand, 41284242 - 41284198
Alignment:
Q  446 atcaatttttgaattttaaaaaccaatctttctttcttcttcctc 490  Q
    ||||||||||||||||||||||||| |||||||||||||||||||    
T  41284242 atcaatttttgaattttaaaaaccactctttctttcttcttcctc 41284198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 383 - 466
Target Start/End: Complemental strand, 35931205 - 35931120
Alignment:
Q  383 ttagtagagggactaaaaccaaaaacgcatttttacgtagggatgaaatta--aaaatcttaattatcaatttttgaattttaaaa 466  Q
    |||||| ||| ||||||||||||||||||||||||| ||||||  ||||||  |||| | ||||  ||||||||||||||||||||    
T  35931205 ttagtataggaactaaaaccaaaaacgcatttttacatagggactaaattaagaaaaacgtaatcttcaatttttgaattttaaaa 35931120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 212 - 260
Target Start/End: Complemental strand, 38626230 - 38626182
Alignment:
Q  212 aggcttaaataagtaaaaggtccctgtaagttcgcgcgtttttggtttt 260  Q
    ||||||||||| |||||||||||||||||||||||  ||||||||||||    
T  38626230 aggcttaaatatgtaaaaggtccctgtaagttcgcatgtttttggtttt 38626182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 211 - 270
Target Start/End: Complemental strand, 9672412 - 9672353
Alignment:
Q  211 taggcttaaataagtaaaaggtccctgtaagttcgcgcgtttttggttttagcccctgta 270  Q
    ||||||||||||  |||||||||||||||||||||||| ||||| ||||| | |||||||    
T  9672412 taggcttaaatatataaaaggtccctgtaagttcgcgcattttttgttttcgtccctgta 9672353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 212 - 270
Target Start/End: Original strand, 16308564 - 16308622
Alignment:
Q  212 aggcttaaataagtaaaaggtccctgtaagttcgcgcgtttttggttttagcccctgta 270  Q
    ||||||||||| |||||  ||||||||||||||||| |||||||||||| | |||||||    
T  16308564 aggcttaaatatgtaaatcgtccctgtaagttcgcgtgtttttggttttcgtccctgta 16308622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 215 - 260
Target Start/End: Complemental strand, 35931405 - 35931360
Alignment:
Q  215 cttaaataagtaaaaggtccctgtaagttcgcgcgtttttggtttt 260  Q
    |||||||| |||||||||||||||||||||||| | ||||||||||    
T  35931405 cttaaataggtaaaaggtccctgtaagttcgcgagattttggtttt 35931360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 214 - 270
Target Start/End: Original strand, 35929523 - 35929579
Alignment:
Q  214 gcttaaataagtaaaaggtccctgtaagttcgcgcgtttttggttttagcccctgta 270  Q
    ||||||||||||||||||||| |||||||||| | | |||||||||| | |||||||    
T  35929523 gcttaaataagtaaaaggtccttgtaagttcgtgagattttggttttcgtccctgta 35929579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 211 - 243
Target Start/End: Original strand, 41281872 - 41281904
Alignment:
Q  211 taggcttaaataagtaaaaggtccctgtaagtt 243  Q
    |||||||||||||||||||||||||||||||||    
T  41281872 taggcttaaataagtaaaaggtccctgtaagtt 41281904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 383 - 437
Target Start/End: Original strand, 35929726 - 35929780
Alignment:
Q  383 ttagtagagggactaaaaccaaaaacgcatttttacgtagggatgaaattaaaaa 437  Q
    |||||| ||||||||||| ||||||||||||||||| ||| ||  ||||||||||    
T  35929726 ttagtatagggactaaaatcaaaaacgcatttttacatagagactaaattaaaaa 35929780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 210 - 270
Target Start/End: Complemental strand, 27756847 - 27756787
Alignment:
Q  210 ataggcttaaataagtaaaaggtccctgtaagttcgcgcgtttttggttttagcccctgta 270  Q
    ||||||||||||| |||||  |||||| |||||||||| |||||| ||||| | |||||||    
T  27756847 ataggcttaaatatgtaaatcgtccctctaagttcgcgtgttttttgttttcgtccctgta 27756787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 57; Significance: 1e-23; HSPs: 46)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 374 - 470
Target Start/End: Original strand, 39870636 - 39870732
Alignment:
Q  374 caactggtcttagtagagggactaaaaccaaaaacgcatttttacgtagggatgaaattaaaaatcttaattatcaatttttgaattttaaaaacca 470  Q
    |||||||| | | |||||||||||||| |||||||| |||||||| |||||||| ||||||||| | |||| |||||||||||||||||||||||||    
T  39870636 caactggtttaattagagggactaaaatcaaaaacgtatttttacatagggatgtaattaaaaaacgtaatcatcaatttttgaattttaaaaacca 39870732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 385 - 490
Target Start/End: Complemental strand, 25529773 - 25529667
Alignment:
Q  385 agtagagggactaaaaccaaaaacgcatttttacgtagggatgaaattaaaaatct-taattatcaatttttgaattttaaaaaccaatctttctttctt 483  Q
    ||||||||||||||||||||||||  ||||||||  ||||||| |||||||||  | |||  |||| |||||||||||||||||||| ||||||||||||    
T  25529773 agtagagggactaaaaccaaaaacatatttttacacagggatgtaattaaaaaaatgtaaacatcagtttttgaattttaaaaaccactctttctttctt 25529674  T
Q  484 cttcctc 490  Q
    |||||||    
T  25529673 cttcctc 25529667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 377 - 437
Target Start/End: Original strand, 3149448 - 3149508
Alignment:
Q  377 ctggtcttagtagagggactaaaaccaaaaacgcatttttacgtagggatgaaattaaaaa 437  Q
    ||||||||||||||||||||||||||||| |||||||||||| |||||| |||||||||||    
T  3149448 ctggtcttagtagagggactaaaaccaaagacgcatttttacatagggacgaaattaaaaa 3149508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 212 - 270
Target Start/End: Complemental strand, 3026941 - 3026883
Alignment:
Q  212 aggcttaaataagtaaaaggtccctgtaagttcgcgcgtttttggttttagcccctgta 270  Q
    |||||||||||||||||||||||||||||||| || ||||||||||||||| |||||||    
T  3026941 aggcttaaataagtaaaaggtccctgtaagttggcacgtttttggttttagtccctgta 3026883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 210 - 270
Target Start/End: Complemental strand, 3150081 - 3150021
Alignment:
Q  210 ataggcttaaataagtaaaaggtccctgtaagttcgcgcgtttttggttttagcccctgta 270  Q
    ||||||||||||| ||||||||||||||||||||  ||||||||||||||||| |||||||    
T  3150081 ataggcttaaatatgtaaaaggtccctgtaagttaacgcgtttttggttttagtccctgta 3150021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 212 - 267
Target Start/End: Complemental strand, 25529977 - 25529922
Alignment:
Q  212 aggcttaaataagtaaaaggtccctgtaagttcgcgcgtttttggttttagcccct 267  Q
    ||||||||||||||||||||||| |||||||| |||||||||||||||||| ||||    
T  25529977 aggcttaaataagtaaaaggtccttgtaagttggcgcgtttttggttttagtccct 25529922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 396 - 490
Target Start/End: Original strand, 27361399 - 27361493
Alignment:
Q  396 taaaaccaaaaacgcatttttacgtagggatgaaattaaaaatcttaattatcaatttttgaattttaaaaaccaatctttctttcttcttcctc 490  Q
    ||||||||||||| ||  ||||| |||||||||||||||||| | ||| |||||| |||||||||||||||| |||  ||||  |||||||||||    
T  27361399 taaaaccaaaaacacaaatttacatagggatgaaattaaaaaacctaaatatcaaattttgaattttaaaaatcaaattttccatcttcttcctc 27361493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 212 - 270
Target Start/End: Original strand, 41081801 - 41081859
Alignment:
Q  212 aggcttaaataagtaaaaggtccctgtaagttcgcgcgtttttggttttagcccctgta 270  Q
    ||||||||||| |||||||||||||||||||||||| |||||||||||| | |||||||    
T  41081801 aggcttaaatatgtaaaaggtccctgtaagttcgcgtgtttttggttttcgtccctgta 41081859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 213 - 270
Target Start/End: Original strand, 31795373 - 31795430
Alignment:
Q  213 ggcttaaataagtaaaaggtccctgtaagttcgcgcgtttttggttttagcccctgta 270  Q
    |||||||||| |||||||||||||||||||||||| |||||||||||| | |||||||    
T  31795373 ggcttaaatacgtaaaaggtccctgtaagttcgcgtgtttttggttttcggccctgta 31795430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 210 - 270
Target Start/End: Original strand, 32558916 - 32558976
Alignment:
Q  210 ataggcttaaataagtaaaaggtccctgtaagttcgcgcgtttttggttttagcccctgta 270  Q
    ||||||||||||| |||||||||||||||||||||||| |||||| ||||| | |||||||    
T  32558916 ataggcttaaatatgtaaaaggtccctgtaagttcgcgtgttttttgttttcgtccctgta 32558976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 212 - 260
Target Start/End: Complemental strand, 40499312 - 40499264
Alignment:
Q  212 aggcttaaataagtaaaaggtccctgtaagttcgcgcgtttttggtttt 260  Q
    ||||||||||| |||||||||||||||||||||||| ||||||||||||    
T  40499312 aggcttaaatatgtaaaaggtccctgtaagttcgcgtgtttttggtttt 40499264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 387 - 466
Target Start/End: Original strand, 1677177 - 1677256
Alignment:
Q  387 tagagggactaaaaccaaaaacgcatttttacgtagggatgaaattaaaaatcttaattatcaatttttgaattttaaaa 466  Q
    |||||||||||||||||||||||||  ||||| |||||| |||| |||||| | |||| |||||  ||||||||||||||    
T  1677177 tagagggactaaaaccaaaaacgcaaatttacatagggacgaaaataaaaaacgtaatcatcaaaatttgaattttaaaa 1677256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 346 - 437
Target Start/End: Complemental strand, 20340244 - 20340153
Alignment:
Q  346 tggcatttggtgagttgtcaattgttgacaactggtcttagtagagggactaaaaccaaaaacgcatttttacgtagggatgaaattaaaaa 437  Q
    ||||| |||||||  ||||| | |||||  |||||| |||||| |||||| |||||||||||||||||||||| ||||||  ||||||||||    
T  20340244 tggcacttggtgatatgtcattagttgatgactggtgttagtatagggaccaaaaccaaaaacgcatttttacatagggactaaattaaaaa 20340153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 211 - 262
Target Start/End: Complemental strand, 27662718 - 27662667
Alignment:
Q  211 taggcttaaataagtaaaaggtccctgtaagttcgcgcgtttttggttttag 262  Q
    ||||||||||||||||||||||||| ||||||| |||||||||| |||||||    
T  27662718 taggcttaaataagtaaaaggtcccggtaagttagcgcgttttttgttttag 27662667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 213 - 260
Target Start/End: Complemental strand, 31796893 - 31796846
Alignment:
Q  213 ggcttaaataagtaaaaggtccctgtaagttcgcgcgtttttggtttt 260  Q
    |||||||||| |||||||||||||||||||||||| ||||||||||||    
T  31796893 ggcttaaatatgtaaaaggtccctgtaagttcgcgtgtttttggtttt 31796846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 392 - 490
Target Start/End: Complemental strand, 55198166 - 55198067
Alignment:
Q  392 ggactaaaaccaaaaacgcatttttacgtagggatgaaattaaaaat-cttaattatcaatttttgaattttaaaaaccaatctttctttcttcttcctc 490  Q
    |||||||||||||||||||| ||| || ||||||  || |||||||  | |||| |||||||||| |||||||||||||| | |||| ||||||||||||    
T  55198166 ggactaaaaccaaaaacgcaatttaacatagggactaatttaaaaaaacgtaatcatcaattttttaattttaaaaaccagtttttccttcttcttcctc 55198067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 214 - 260
Target Start/End: Original strand, 24612279 - 24612325
Alignment:
Q  214 gcttaaataagtaaaaggtccctgtaagttcgcgcgtttttggtttt 260  Q
    ||||||||| ||||||||||||||||||||||||| |||||||||||    
T  24612279 gcttaaatatgtaaaaggtccctgtaagttcgcgcatttttggtttt 24612325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 320 - 437
Target Start/End: Complemental strand, 3026802 - 3026685
Alignment:
Q  320 gcatcgctggctaacggacaccgacgtggcatttggtgagttgtcaattgttgacaactggtcttagtagagggactaaaaccaaaaacgcatttttacg 419  Q
    |||| |||||||||||| | || ||||||||  || |||  || |||  |||| |||||||  | ||||||||||||||||||||||||  ||||||||     
T  3026802 gcattgctggctaacggtcgcctacgtggcacatgctgatatggcaacagttgccaactggattaagtagagggactaaaaccaaaaacatatttttaca 3026703  T
Q  420 tagggatgaaattaaaaa 437  Q
    |||||||| |||||||||    
T  3026702 tagggatgtaattaaaaa 3026685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 213 - 270
Target Start/End: Original strand, 5377807 - 5377864
Alignment:
Q  213 ggcttaaataagtaaaaggtccctgtaagttcgcgcgtttttggttttagcccctgta 270  Q
    |||||||||||||||||||||||||||| || |||| ||||| ||||||| |||||||    
T  5377807 ggcttaaataagtaaaaggtccctgtaaattggcgcattttttgttttagtccctgta 5377864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 371 - 472
Target Start/End: Original strand, 26537594 - 26537695
Alignment:
Q  371 tgacaactggtcttagtagagggactaaaaccaaaaacgcatttttacgtagggatgaaattaaaaatcttaattatcaatttttgaattttaaaaacca 470  Q
    |||||| |||| |||||||||||||||||| ||||||| ||| ||||  || ||||||||||||||| | |||| ||||| ||||  | ||||||| |||    
T  26537594 tgacaattggtgttagtagagggactaaaatcaaaaacacatatttaaataaggatgaaattaaaaaacgtaatcatcaaattttacaatttaaaaccca 26537693  T
Q  471 at 472  Q
    ||    
T  26537694 at 26537695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 392 - 465
Target Start/End: Original strand, 27329054 - 27329127
Alignment:
Q  392 ggactaaaaccaaaaacgcatttttacgtagggatgaaattaaaaatcttaattatcaatttttgaattttaaa 465  Q
    ||||||||||||||||| ||  ||||| |||||||||||||||||| | |||  ||||| ||||||||||||||    
T  27329054 ggactaaaaccaaaaacacaaatttacatagggatgaaattaaaaaacctaaacatcaaattttgaattttaaa 27329127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 378 - 466
Target Start/End: Complemental strand, 27662482 - 27662394
Alignment:
Q  378 tggtcttagtagagggactaaaaccaaaaacgcatttttacgtagggatgaaatt-aaaaatcttaattatcaatttttgaattttaaaa 466  Q
    |||||||||||||||||||||||| |||||||||| |||||  | ||| |||||| ||||| | |||||||||| ||||||| |||||||    
T  27662482 tggtcttagtagagggactaaaactaaaaacgcatatttacaga-ggacgaaattaaaaaaacataattatcaaattttgaaatttaaaa 27662394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 387 - 486
Target Start/End: Original strand, 34594455 - 34594551
Alignment:
Q  387 tagagggactaaaaccaaaaacgcatttttacgtagggatgaaattaaaaatcttaattatcaatttttgaattttaaaaaccaatctttctttcttctt 486  Q
    ||||||||||||||||||||||| |  ||||| |||||||||||||||||| | |||| ||  | ||||||   |||||||||||||||||  |||||||    
T  34594455 tagagggactaaaaccaaaaacggaaatttacatagggatgaaattaaaaaacataatcattgaattttga---ttaaaaaccaatctttccatcttctt 34594551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 211 - 260
Target Start/End: Complemental strand, 41083332 - 41083283
Alignment:
Q  211 taggcttaaataagtaaaaggtccctgtaagttcgcgcgtttttggtttt 260  Q
    |||||||||||| |||||||||||||||||||| ||| ||||||||||||    
T  41083332 taggcttaaatatgtaaaaggtccctgtaagtttgcgtgtttttggtttt 41083283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 213 - 262
Target Start/End: Original strand, 55196574 - 55196623
Alignment:
Q  213 ggcttaaataagtaaaaggtccctgtaagttcgcgcgtttttggttttag 262  Q
    |||||||||||| ||||||||| ||||||||||||| |||||||||||||    
T  55196574 ggcttaaataagaaaaaggtccttgtaagttcgcgcatttttggttttag 55196623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 390 - 490
Target Start/End: Complemental strand, 27320526 - 27320426
Alignment:
Q  390 agggactaaaaccaaaaacgcatttttacgtagggatgaaattaaaaatcttaattatcaatttttgaattttaaaaaccaatctttctttcttcttcct 489  Q
    ||||||||||| |||||||| |  ||||| ||||||||||| |||||| | ||   || || |||||||||||||||||||| |||||  ||||||||||    
T  27320526 agggactaaaatcaaaaacgaaaatttacatagggatgaaaataaaaaacgtagacattaaattttgaattttaaaaaccaaactttccatcttcttcct 27320427  T
Q  490 c 490  Q
    |    
T  27320426 c 27320426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 371 - 435
Target Start/End: Original strand, 27661307 - 27661371
Alignment:
Q  371 tgacaactggtcttagtagagggactaaaaccaaaaacgcatttttacgtagggatgaaattaaa 435  Q
    ||||||||||| ||||||||||||||||||| || ||| ||| ||||| ||||| ||||||||||    
T  27661307 tgacaactggtgttagtagagggactaaaacaaataacacatatttacataggggtgaaattaaa 27661371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 216 - 260
Target Start/End: Complemental strand, 33781550 - 33781506
Alignment:
Q  216 ttaaataagtaaaaggtccctgtaagttcgcgcgtttttggtttt 260  Q
    ||||||| ||||||||||||||||||||||||||||||| |||||    
T  33781550 ttaaatatgtaaaaggtccctgtaagttcgcgcgttttttgtttt 33781506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 385 - 437
Target Start/End: Complemental strand, 39872001 - 39871949
Alignment:
Q  385 agtagagggactaaaaccaaaaacgcatttttacgtagggatgaaattaaaaa 437  Q
    ||||||||||||||||||||||||  |||||||| |||||||| |||||||||    
T  39872001 agtagagggactaaaaccaaaaacatatttttacatagggatgtaattaaaaa 39871949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 212 - 260
Target Start/End: Original strand, 48566995 - 48567043
Alignment:
Q  212 aggcttaaataagtaaaaggtccctgtaagttcgcgcgtttttggtttt 260  Q
    ||||||||||| |||||||||||||||||||| ||| ||||||||||||    
T  48566995 aggcttaaatatgtaaaaggtccctgtaagtttgcgtgtttttggtttt 48567043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 371 - 437
Target Start/End: Complemental strand, 3149897 - 3149830
Alignment:
Q  371 tgacaactggtcttagtagagggactaaaaccaaaaacgcatttttacgtaggga-tgaaattaaaaa 437  Q
    ||||| ||| |||| |||||||||| ||||| |||||||||||||||| |||||| ||||||||||||    
T  3149897 tgacagctgctcttggtagagggacaaaaacgaaaaacgcatttttacatagggactgaaattaaaaa 3149830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 211 - 270
Target Start/End: Complemental strand, 5387316 - 5387257
Alignment:
Q  211 taggcttaaataagtaaaaggtccctgtaagttcgcgcgtttttggttttagcccctgta 270  Q
    ||||||||||||||| |||||||||||||| || | || ||||||||||||| |||||||    
T  5387316 taggcttaaataagtgaaaggtccctgtaaattggtgcatttttggttttagtccctgta 5387257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 383 - 450
Target Start/End: Original strand, 13645043 - 13645110
Alignment:
Q  383 ttagtagagggactaaaaccaaaaacgcatttttacgtagggatgaaattaaaaatcttaattatcaa 450  Q
    |||||||||||||||||||||||||||||  ||||| |||||| |||| |||||| | |||| |||||    
T  13645043 ttagtagagggactaaaaccaaaaacgcaaatttacatagggacgaaaataaaaaacataataatcaa 13645110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 215 - 270
Target Start/End: Complemental strand, 24613669 - 24613614
Alignment:
Q  215 cttaaataagtaaaaggtccctgtaagttcgcgcgtttttggttttagcccctgta 270  Q
    |||||||| ||||||||||||||||||||||||| ||||| ||||| | |||||||    
T  24613669 cttaaatatgtaaaaggtccctgtaagttcgcgcattttttgttttcgtccctgta 24613614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 213 - 260
Target Start/End: Complemental strand, 48568589 - 48568542
Alignment:
Q  213 ggcttaaataagtaaaaggtccctgtaagttcgcgcgtttttggtttt 260  Q
    |||||||||| |||||||||| ||||||||||||| ||||||||||||    
T  48568589 ggcttaaatatgtaaaaggtctctgtaagttcgcgtgtttttggtttt 48568542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 212 - 262
Target Start/End: Original strand, 3025822 - 3025872
Alignment:
Q  212 aggcttaaataagtaaaaggtccctgtaagttcgcgcgtttttggttttag 262  Q
    ||||||||||||||||||||| |||||||||| |||| ||||| |||||||    
T  3025822 aggcttaaataagtaaaaggttcctgtaagttggcgcattttttgttttag 3025872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 216 - 270
Target Start/End: Complemental strand, 32615702 - 32615648
Alignment:
Q  216 ttaaataagtaaaaggtccctgtaagttcgcgcgtttttggttttagcccctgta 270  Q
    ||||||| |||||||||||||||||||||||| |||||| ||||| | |||||||    
T  32615702 ttaaatatgtaaaaggtccctgtaagttcgcgtgttttttgtttttgtccctgta 32615648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 209 - 262
Target Start/End: Original strand, 3149258 - 3149311
Alignment:
Q  209 aataggcttaaataagtaaaaggtccctgtaagttcgcgcgtttttggttttag 262  Q
    |||||| |||||||||||||||||||||||||||| ||  ||||| ||||||||    
T  3149258 aataggtttaaataagtaaaaggtccctgtaagttagccagttttgggttttag 3149311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 383 - 490
Target Start/End: Complemental strand, 1678631 - 1678523
Alignment:
Q  383 ttagtagagggactaaaaccaaaaacgcatttttacgtagggatgaaattaaaaat-cttaattatcaatttttgaattttaaaaaccaatctttctttc 481  Q
    |||||| |||||||||||||||||| |||  || || ||||||  || |||||||  | |||| |||||||||| ||||||||||||||   |||| |||    
T  1678631 ttagtatagggactaaaaccaaaaaagcaaattaacatagggactaatttaaaaaaacgtaatcatcaatttttaaattttaaaaaccaggttttccttc 1678532  T
Q  482 ttcttcctc 490  Q
    |||||||||    
T  1678531 ttcttcctc 1678523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 396 - 467
Target Start/End: Original strand, 27319669 - 27319740
Alignment:
Q  396 taaaaccaaaaacgcatttttacgtagggatgaaattaaaaatcttaattatcaatttttgaattttaaaaa 467  Q
    ||||||||| ||| ||  ||||| ||||| |||||||||||| | ||| |||||| ||||||||||||||||    
T  27319669 taaaaccaagaacacaaatttacatagggttgaaattaaaaaacctaaatatcaaattttgaattttaaaaa 27319740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 211 - 254
Target Start/End: Complemental strand, 32559944 - 32559901
Alignment:
Q  211 taggcttaaataagtaaaaggtccctgtaagttcgcgcgttttt 254  Q
    |||||||||||| |||||||||| ||||||||||||| ||||||    
T  32559944 taggcttaaatatgtaaaaggtctctgtaagttcgcgtgttttt 32559901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #42
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 212 - 267
Target Start/End: Original strand, 33551587 - 33551641
Alignment:
Q  212 aggcttaaataagtaaaaggtccctgtaagttcgcgcgtttttggttttagcccct 267  Q
    ||||||||||| |||||||| ||||||||||| |||||||||| ||||||| ||||    
T  33551587 aggcttaaatatgtaaaagg-ccctgtaagttggcgcgttttttgttttagtccct 33551641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #43
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 211 - 262
Target Start/End: Original strand, 39870452 - 39870503
Alignment:
Q  211 taggcttaaataagtaaaaggtccctgtaagttcgcgcgtttttggttttag 262  Q
    |||||||||||||||||||||| | ||||||||  ||||||||| |||||||    
T  39870452 taggcttaaataagtaaaaggttcttgtaagttgacgcgttttttgttttag 39870503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #44
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 213 - 270
Target Start/End: Original strand, 32613883 - 32613941
Alignment:
Q  213 ggcttaaataagtaaaaggtccctgt-aagttcgcgcgtttttggttttagcccctgta 270  Q
    |||||||||| ||||||||||| ||| ||||||||| |||||||||||| | |||||||    
T  32613883 ggcttaaatatgtaaaaggtccttgtaaagttcgcgtgtttttggttttcgtccctgta 32613941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #45
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 213 - 259
Target Start/End: Complemental strand, 39872205 - 39872159
Alignment:
Q  213 ggcttaaataagtaaaaggtccctgtaagttcgcgcgtttttggttt 259  Q
    |||||||||||||||||||||| ||||||||  ||| ||||||||||    
T  39872205 ggcttaaataagtaaaaggtccttgtaagttgacgcatttttggttt 39872159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #46
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 213 - 262
Target Start/End: Original strand, 26537414 - 26537463
Alignment:
Q  213 ggcttaaataagtaaaaggtccctgtaagttcgcgcgtttttggttttag 262  Q
    |||||||||||||||||||||| | |||| | || |||||||||||||||    
T  26537414 ggcttaaataagtaaaaggtccatataagctagcacgtttttggttttag 26537463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 53; Significance: 3e-21; HSPs: 39)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 369 - 437
Target Start/End: Complemental strand, 28167207 - 28167139
Alignment:
Q  369 gttgacaactggtcttagtagagggactaaaaccaaaaacgcatttttacgtagggatgaaattaaaaa 437  Q
    |||| ||||||||||||||||||||||||||| ||||||||||||||||| |||||| |||||||||||    
T  28167207 gttggcaactggtcttagtagagggactaaaatcaaaaacgcatttttacatagggacgaaattaaaaa 28167139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 343 - 487
Target Start/End: Original strand, 5694776 - 5694921
Alignment:
Q  343 acgtggcatttggtgagttgtcaattgttgacaactggtcttagtagagggactaaaaccaaaaacgcatttttacgtagggatgaaatt-aaaaatctt 441  Q
    |||||||| || |||||||| || | |||||  |||||  |||||| |||||||||||||||||||||| ||| || ||||||  || || ||||| | |    
T  5694776 acgtggcacttcgtgagttggcactagttgatgactggggttagtatagggactaaaaccaaaaacgcaatttaacatagggactaatttaaaaaaacat 5694875  T
Q  442 aattatcaatttttgaattttaaaaaccaatctttctttcttcttc 487  Q
    ||| |||||||||| ||||||||||| || |||||| |||||||||    
T  5694876 aatcatcaatttttaaattttaaaaatcagtctttccttcttcttc 5694921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 206 - 262
Target Start/End: Complemental strand, 28167396 - 28167340
Alignment:
Q  206 aataataggcttaaataagtaaaaggtccctgtaagttcgcgcgtttttggttttag 262  Q
    ||||| ||| |||||||||||||||||||||||||||| ||||||||||||||||||    
T  28167396 aataaaaggtttaaataagtaaaaggtccctgtaagttagcgcgtttttggttttag 28167340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 211 - 270
Target Start/End: Original strand, 28165656 - 28165715
Alignment:
Q  211 taggcttaaataagtaaaaggtccctgtaagttcgcgcgtttttggttttagcccctgta 270  Q
    |||||||||||| ||||||||||| |||||||| |||||||||||||||||| |||||||    
T  28165656 taggcttaaatatgtaaaaggtccatgtaagttagcgcgtttttggttttagtccctgta 28165715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 212 - 270
Target Start/End: Original strand, 22054333 - 22054391
Alignment:
Q  212 aggcttaaataagtaaaaggtccctgtaagttcgcgcgtttttggttttagcccctgta 270  Q
    ||||||||||| ||||||||||||||||||||||||| ||||||||||| | |||||||    
T  22054333 aggcttaaatatgtaaaaggtccctgtaagttcgcgcatttttggttttcgtccctgta 22054391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 210 - 260
Target Start/End: Original strand, 40303290 - 40303340
Alignment:
Q  210 ataggcttaaataagtaaaaggtccctgtaagttcgcgcgtttttggtttt 260  Q
    ||||||||||||| |||||||||||||||||||||||| ||||||||||||    
T  40303290 ataggcttaaatatgtaaaaggtccctgtaagttcgcgtgtttttggtttt 40303340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 374 - 490
Target Start/End: Original strand, 9261654 - 9261770
Alignment:
Q  374 caactggtcttagtagagggactaaaaccaaaaacgcatttttacgtagggatgaaatt-aaaaatcttaattatcaatttttgaattttaaaaaccaat 472  Q
    |||||||| | |||||| |||||||||||||||||| ||||||||  | | ||| |||| ||||| | |||| || |||||||||| ||||||||||| |    
T  9261654 caactggtataagtagacggactaaaaccaaaaacgtatttttacaaaagtatgtaattaaaaaaacgtaatcattaatttttgaa-tttaaaaaccact 9261752  T
Q  473 ctttctttcttcttcctc 490  Q
    ||||| ||||||||||||    
T  9261753 ctttccttcttcttcctc 9261770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 213 - 262
Target Start/End: Complemental strand, 9262951 - 9262902
Alignment:
Q  213 ggcttaaataagtaaaaggtccctgtaagttcgcgcgtttttggttttag 262  Q
    |||||||||||||||||||| ||||||||||||||||| |||||||||||    
T  9262951 ggcttaaataagtaaaaggttcctgtaagttcgcgcgtatttggttttag 9262902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 213 - 270
Target Start/End: Complemental strand, 40304821 - 40304764
Alignment:
Q  213 ggcttaaataagtaaaaggtccctgtaagttcgcgcgtttttggttttagcccctgta 270  Q
    |||||||||| |||||||||||||||||||||||| |||||||||||| | |||||||    
T  40304821 ggcttaaatatgtaaaaggtccctgtaagttcgcgtgtttttggttttcgtccctgta 40304764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 212 - 261
Target Start/End: Complemental strand, 44906195 - 44906146
Alignment:
Q  212 aggcttaaataagtaaaaggtccctgtaagttcgcgcgtttttggtttta 261  Q
    ||||||||||||||||||||||||| |||||| |||||||||||||||||    
T  44906195 aggcttaaataagtaaaaggtccctataagttagcgcgtttttggtttta 44906146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 212 - 260
Target Start/End: Original strand, 45499304 - 45499352
Alignment:
Q  212 aggcttaaataagtaaaaggtccctgtaagttcgcgcgtttttggtttt 260  Q
    ||||||||||| |||||||||||||||||||||||| ||||||||||||    
T  45499304 aggcttaaatatgtaaaaggtccctgtaagttcgcgtgtttttggtttt 45499352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 371 - 437
Target Start/End: Original strand, 44904712 - 44904779
Alignment:
Q  371 tgacaactggtcttagtagagggactaaaaccaaaaacgcatttttacgtaggga-tgaaattaaaaa 437  Q
    ||||||||| ||||||||||||||||||||  |||||| ||||||||| |||||| ||||||||||||    
T  44904712 tgacaactgctcttagtagagggactaaaatgaaaaacacatttttacatagggactgaaattaaaaa 44904779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 211 - 270
Target Start/End: Complemental strand, 45493093 - 45493034
Alignment:
Q  211 taggcttaaataagtaaaaggtccctgtaagttcgcgcgtttttggttttagcccctgta 270  Q
    |||||||||||| ||||||||||||||||| |||||| |||||||||||| | |||||||    
T  45493093 taggcttaaatatgtaaaaggtccctgtaaattcgcgtgtttttggttttcgtccctgta 45493034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 211 - 270
Target Start/End: Complemental strand, 45500835 - 45500776
Alignment:
Q  211 taggcttaaataagtaaaaggtccctgtaagttcgcgcgtttttggttttagcccctgta 270  Q
    |||||||||||| ||||||||||||||||| |||||| |||||||||||| | |||||||    
T  45500835 taggcttaaatatgtaaaaggtccctgtaaattcgcgtgtttttggttttcgtccctgta 45500776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 211 - 260
Target Start/End: Complemental strand, 6844158 - 6844109
Alignment:
Q  211 taggcttaaataagtaaaaggtccctgtaagttcgcgcgtttttggtttt 260  Q
    |||||||||||| ||||||||||| |||||||||||| ||||||||||||    
T  6844158 taggcttaaatatgtaaaaggtccttgtaagttcgcgtgtttttggtttt 6844109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 213 - 270
Target Start/End: Complemental strand, 22060219 - 22060162
Alignment:
Q  213 ggcttaaataagtaaaaggtccctgtaagttcgcgcgtttttggttttagcccctgta 270  Q
    |||||||||| ||||||||||| ||||||||||||| ||||||||||| | |||||||    
T  22060219 ggcttaaatatgtaaaaggtccatgtaagttcgcgcatttttggttttcgtccctgta 22060162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 375 - 477
Target Start/End: Original strand, 28165844 - 28165949
Alignment:
Q  375 aactggtcttagtagagggactaaaaccaaaaacgcatttttacgtaggga-tgaaatt-aaaaatcttaattatc-aatttttgaattttaaaaaccaa 471  Q
    ||||| ||||||||||||||||||||| |||| ||||||||||| || ||| ||||||| ||||| | |||| ||| |||||||||| ||| ||| ||||    
T  28165844 aactgctcttagtagagggactaaaacgaaaagcgcatttttacataaggactgaaattaaaaaaacgtaatcatcaaatttttgaaattttaaacccaa 28165943  T
Q  472 tctttc 477  Q
    ||||||    
T  28165944 tctttc 28165949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 392 - 477
Target Start/End: Complemental strand, 31559386 - 31559301
Alignment:
Q  392 ggactaaaaccaaaaacgcatttttacgtagggatgaaattaaaaatcttaattatcaatttttgaattttaaaaaccaatctttc 477  Q
    |||||||||||||||||| || ||||| |||||||||||||||||  | |||| ||| | ||||||| |||||||| |||| ||||    
T  31559386 ggactaaaaccaaaaacgaatatttacatagggatgaaattaaaacacgtaatcatcgaattttgaaatttaaaaatcaatatttc 31559301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 206 - 270
Target Start/End: Complemental strand, 44097419 - 44097355
Alignment:
Q  206 aataataggcttaaataagtaaaaggtccctgtaagttcgcgcgtttttggttttagcccctgta 270  Q
    ||||| |||||||||||  ||||||||| ||||||||||||| |||||||||||| | |||||||    
T  44097419 aataaaaggcttaaatatataaaaggtctctgtaagttcgcgtgtttttggttttcgtccctgta 44097355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 207 - 270
Target Start/End: Complemental strand, 44820995 - 44820932
Alignment:
Q  207 ataataggcttaaataagtaaaaggtccctgtaagttcgcgcgtttttggttttagcccctgta 270  Q
    |||| ||||||||||| ||||||||||||||||| ||||||| ||||| ||||| | |||||||    
T  44820995 ataaaaggcttaaatatgtaaaaggtccctgtaaattcgcgcattttttgttttcgtccctgta 44820932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 212 - 270
Target Start/End: Complemental strand, 18224905 - 18224847
Alignment:
Q  212 aggcttaaataagtaaaaggtccctgtaagttcgcgcgtttttggttttagcccctgta 270  Q
    ||||||||||| ||||||||||||||||| || | | |||||||||||||| |||||||    
T  18224905 aggcttaaatatgtaaaaggtccctgtaatttagtgtgtttttggttttagtccctgta 18224847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 214 - 260
Target Start/End: Complemental strand, 22060538 - 22060492
Alignment:
Q  214 gcttaaataagtaaaaggtccctgtaagttcgcgcgtttttggtttt 260  Q
    ||||||||| |||||||||||||||||||| ||| ||||||||||||    
T  22060538 gcttaaatatgtaaaaggtccctgtaagtttgcgtgtttttggtttt 22060492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 388 - 490
Target Start/End: Original strand, 40127441 - 40127543
Alignment:
Q  388 agagggactaaaaccaaaaacgcatttttacgtagggatgaaattaaaaatcttaattatcaatttttgaattttaaaaaccaatctttctttcttcttc 487  Q
    |||||||||||||||||||||| |  || || |||||||||| |||||||   |||  ||||| |||| ||||||||||| ||| |||||  ||||||||    
T  40127441 agagggactaaaaccaaaaacgaaaattgacatagggatgaatttaaaaaaagtaaacatcaaattttaaattttaaaaatcaaactttccatcttcttc 40127540  T
Q  488 ctc 490  Q
    |||    
T  40127541 ctc 40127543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 212 - 270
Target Start/End: Original strand, 43516397 - 43516455
Alignment:
Q  212 aggcttaaataagtaaaaggtccctgtaagttcgcgcgtttttggttttagcccctgta 270  Q
    ||||||||||| ||||||||||||||||| ||||||| ||||| ||||| | |||||||    
T  43516397 aggcttaaatatgtaaaaggtccctgtaatttcgcgcattttttgttttcgtccctgta 43516455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 391 - 437
Target Start/End: Complemental strand, 44906028 - 44905982
Alignment:
Q  391 gggactaaaaccaaaaacgcatttttacgtagggatgaaattaaaaa 437  Q
    ||||||||||||||||| |||||||||| |||||| |||||||||||    
T  44906028 gggactaaaaccaaaaatgcatttttacatagggacgaaattaaaaa 44905982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 215 - 260
Target Start/End: Original strand, 7317392 - 7317437
Alignment:
Q  215 cttaaataagtaaaaggtccctgtaagttcgcgcgtttttggtttt 260  Q
    |||||||| ||||||| |||||||||||||||| ||||||||||||    
T  7317392 cttaaatatgtaaaagatccctgtaagttcgcgtgtttttggtttt 7317437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 213 - 262
Target Start/End: Original strand, 9261463 - 9261512
Alignment:
Q  213 ggcttaaataagtaaaaggtccctgtaagttcgcgcgtttttggttttag 262  Q
    |||||||||||||||||||||  |||||||| |||||| |||||||||||    
T  9261463 ggcttaaataagtaaaaggtcaatgtaagtttgcgcgtgtttggttttag 9261512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 209 - 262
Target Start/End: Complemental strand, 16289037 - 16288984
Alignment:
Q  209 aataggcttaaataagtaaaaggtccctgtaagttcgcgcgtttttggttttag 262  Q
    |||||||||||||| ||||||| ||||||||||||  ||||||||| |||||||    
T  16289037 aataggcttaaatatgtaaaagatccctgtaagttgacgcgttttttgttttag 16288984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 213 - 270
Target Start/End: Complemental strand, 28564014 - 28563957
Alignment:
Q  213 ggcttaaataagtaaaaggtccctgtaagttcgcgcgtttttggttttagcccctgta 270  Q
    ||||| |||||||||||||||| |||||||||||| | |||||||||| | |||||||    
T  28564014 ggctttaataagtaaaaggtccttgtaagttcgcgagattttggttttcgtccctgta 28563957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 215 - 260
Target Start/End: Original strand, 42928937 - 42928982
Alignment:
Q  215 cttaaataagtaaaaggtccctgtaagttcgcgcgtttttggtttt 260  Q
    |||||||| |||||||||| |||||||||||||| |||||||||||    
T  42928937 cttaaatatgtaaaaggtctctgtaagttcgcgcatttttggtttt 42928982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 387 - 466
Target Start/End: Complemental strand, 5696234 - 5696155
Alignment:
Q  387 tagagggactaaaaccaaaaacgcatttttacgtagggatgaaattaaaaatcttaattatcaatttttgaattttaaaa 466  Q
    ||||||||||||||||||||||| |  |||||  ||||| |||| |||||| | |||| |||||  ||||||||||||||    
T  5696234 tagagggactaaaaccaaaaacgtaaatttacacagggacgaaaataaaaaacataatcatcaaaatttgaattttaaaa 5696155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 388 - 467
Target Start/End: Complemental strand, 43517930 - 43517851
Alignment:
Q  388 agagggactaaaaccaaaaacgcatttttacgtagggatgaaattaaaaatcttaattatcaatttttgaattttaaaaa 467  Q
    |||||||||||||||||||||| |  || || |||||||||| |||||||   |||  ||||| ||||||||||||||||    
T  43517930 agagggactaaaaccaaaaacgaaaattgacatagggatgaatttaaaaaaagtaaacatcaaattttgaattttaaaaa 43517851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 213 - 262
Target Start/End: Complemental strand, 5696428 - 5696379
Alignment:
Q  213 ggcttaaataagtaaaaggtccctgtaagttcgcgcgtttttggttttag 262  Q
    |||||||||||| ||||||||| |||||||| |||| ||||| |||||||    
T  5696428 ggcttaaataagaaaaaggtccatgtaagtttgcgcatttttagttttag 5696379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 207 - 260
Target Start/End: Original strand, 6842709 - 6842762
Alignment:
Q  207 ataataggcttaaataagtaaaaggtccctgtaagttcgcgcgtttttggtttt 260  Q
    |||| ||| ||||||| ||||||||| |||||||||| ||| ||||||||||||    
T  6842709 ataaaaggtttaaatatgtaaaaggttcctgtaagtttgcgtgtttttggtttt 6842762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 213 - 270
Target Start/End: Original strand, 10343988 - 10344045
Alignment:
Q  213 ggcttaaataagtaaaaggtccctgtaagttcgcgcgtttttggttttagcccctgta 270  Q
    |||||||||| ||||||||||| |||||||||| || ||||| ||||| | |||||||    
T  10343988 ggcttaaatatgtaaaaggtccatgtaagttcgtgcattttttgttttcgtccctgta 10344045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 213 - 270
Target Start/End: Complemental strand, 40128986 - 40128929
Alignment:
Q  213 ggcttaaataagtaaaaggtccctgtaagttcgcgcgtttttggttttagcccctgta 270  Q
    |||||| ||| ||||||||||||||||| ||||||| ||||| ||||| | |||||||    
T  40128986 ggcttacatatgtaaaaggtccctgtaatttcgcgcattttttgttttcgtccctgta 40128929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #37
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 211 - 270
Target Start/End: Original strand, 5694611 - 5694671
Alignment:
Q  211 taggcttaaataagt-aaaaggtccctgtaagttcgcgcgtttttggttttagcccctgta 270  Q
    ||||||||||||||| |||||||| |||||| || |||| ||||| ||||||| |||||||    
T  5694611 taggcttaaataagtaaaaaggtctctgtaaattggcgcattttttgttttagtccctgta 5694671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #38
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 211 - 267
Target Start/End: Original strand, 31557943 - 31557999
Alignment:
Q  211 taggcttaaataagtaaaaggtccctgtaagttcgcgcgtttttggttttagcccct 267  Q
    |||| ||||||| |||||||||||| |||||||  |||| |||||||||||| ||||    
T  31557943 taggtttaaatatgtaaaaggtccccgtaagttgacgcgcttttggttttagtccct 31557999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #39
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 218 - 270
Target Start/End: Original strand, 44904532 - 44904584
Alignment:
Q  218 aaataagtaaaaggtccctgtaagttcgcgcgtttttggttttagcccctgta 270  Q
    ||||| ||||||||||  |||||||| |||| ||||||||||||| |||||||    
T  44904532 aaatatgtaaaaggtctttgtaagttagcgcatttttggttttagtccctgta 44904584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 52; Significance: 1e-20; HSPs: 37)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 374 - 437
Target Start/End: Complemental strand, 38758193 - 38758130
Alignment:
Q  374 caactggtcttagtagagggactaaaaccaaaaacgcatttttacgtagggatgaaattaaaaa 437  Q
    ||||||||||||||||||||||||||||||||||| ||||||||| |||||| |||||||||||    
T  38758193 caactggtcttagtagagggactaaaaccaaaaacacatttttacatagggacgaaattaaaaa 38758130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 211 - 270
Target Start/End: Complemental strand, 38758378 - 38758319
Alignment:
Q  211 taggcttaaataagtaaaaggtccctgtaagttcgcgcgtttttggttttagcccctgta 270  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||    
T  38758378 taggcttaaataagtaaaaggtccctgtaagttagcgcgtttttggttttagtccctgta 38758319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 385 - 490
Target Start/End: Complemental strand, 37556387 - 37556281
Alignment:
Q  385 agtagagggactaaaaccaaaaacgcatttttacgtagggatgaaatt-aaaaatcttaattatcaatttttgaattttaaaaaccaatctttctttctt 483  Q
    ||||||||||||||||||||||||| ||||||||  ||||||| |||| ||||| | |||  ||||||||||||||||||||||||| | || | |||||    
T  37556387 agtagagggactaaaaccaaaaacgtatttttacacagggatgtaattaaaaaaacgtaaacatcaatttttgaattttaaaaaccacttttcccttctt 37556288  T
Q  484 cttcctc 490  Q
    |||||||    
T  37556287 cttcctc 37556281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 369 - 466
Target Start/End: Complemental strand, 19639850 - 19639753
Alignment:
Q  369 gttgacaactggtcttagtagagggactaaaaccaaaaacgcatttttacgtagggatgaaattaaaaatcttaattatcaatttttgaattttaaaa 466  Q
    ||||||||| | | |||||||||||| |||||| |||||||||| ||||| |||||||||||||||||| | |||| ||||| ||||||| |||||||    
T  19639850 gttgacaaccgttgttagtagagggattaaaacaaaaaacgcatgtttacatagggatgaaattaaaaaacgtaatcatcaaattttgaaatttaaaa 19639753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 212 - 270
Target Start/End: Complemental strand, 32429930 - 32429872
Alignment:
Q  212 aggcttaaataagtaaaaggtccctgtaagttcgcgcgtttttggttttagcccctgta 270  Q
    |||||||||||||||||| ||||||||||||| |||||||||||||||||| |||||||    
T  32429930 aggcttaaataagtaaaaagtccctgtaagttggcgcgtttttggttttagtccctgta 32429872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 383 - 460
Target Start/End: Complemental strand, 44815963 - 44815886
Alignment:
Q  383 ttagtagagggactaaaaccaaaaacgcatttttacgtagggatgaaattaaaaatcttaattatcaatttttgaatt 460  Q
    ||||||||||| |||||||||||||||||||||||| || |||| ||||||||||   |||| |||||||||||||||    
T  44815963 ttagtagaggggctaaaaccaaaaacgcatttttacataaggattaaattaaaaaaagtaataatcaatttttgaatt 44815886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 381 - 437
Target Start/End: Original strand, 30045976 - 30046032
Alignment:
Q  381 tcttagtagagggactaaaaccaaaaacgcatttttacgtagggatgaaattaaaaa 437  Q
    ||||||||||||||||||||||||||||| |||||||| |||||| |||||||||||    
T  30045976 tcttagtagagggactaaaaccaaaaacgtatttttacatagggacgaaattaaaaa 30046032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 211 - 270
Target Start/End: Original strand, 37547932 - 37547991
Alignment:
Q  211 taggcttaaataagtaaaaggtccctgtaagttcgcgcgtttttggttttagcccctgta 270  Q
    |||||||||||||||||||||||| |||||||| | |||||||||||||||| |||||||    
T  37547932 taggcttaaataagtaaaaggtccttgtaagttggtgcgtttttggttttagtccctgta 37547991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 211 - 270
Target Start/End: Complemental strand, 46246636 - 46246577
Alignment:
Q  211 taggcttaaataagtaaaaggtccctgtaagttcgcgcgtttttggttttagcccctgta 270  Q
    |||||||||||| |||||||||||||||||||||||| |||||||||||| | |||||||    
T  46246636 taggcttaaatatgtaaaaggtccctgtaagttcgcgtgtttttggttttcgtccctgta 46246577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 388 - 490
Target Start/End: Complemental strand, 41593056 - 41592954
Alignment:
Q  388 agagggactaaaaccaaaaacgcatttttacgtagggatgaaattaaaaatcttaattatcaatttttgaattttaaaaaccaatctttctttcttcttc 487  Q
    |||||||||||||||||||||| |  || || ||||||||||||||||||   |||  ||||| |||||||||||||||| ||| |||||  ||||||||    
T  41593056 agagggactaaaaccaaaaacgaaaattgacatagggatgaaattaaaaaaagtaaacatcaaattttgaattttaaaaatcaaactttccatcttcttc 41592957  T
Q  488 ctc 490  Q
    |||    
T  41592956 ctc 41592954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 210 - 270
Target Start/End: Original strand, 706740 - 706800
Alignment:
Q  210 ataggcttaaataagtaaaaggtccctgtaagttcgcgcgtttttggttttagcccctgta 270  Q
    ||||||||||||| ||||||||||||||||| || ||| |||||||||||||| |||||||    
T  706740 ataggcttaaatatgtaaaaggtccctgtaatttagcgtgtttttggttttagtccctgta 706800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 207 - 262
Target Start/End: Complemental strand, 708217 - 708162
Alignment:
Q  207 ataataggcttaaataagtaaaaggtccctgtaagttcgcgcgtttttggttttag 262  Q
    |||||||||||||||| ||||||||||||||||| || ||| ||||||||||||||    
T  708217 ataataggcttaaatatgtaaaaggtccctgtaatttagcgtgtttttggttttag 708162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 213 - 260
Target Start/End: Original strand, 46245122 - 46245169
Alignment:
Q  213 ggcttaaataagtaaaaggtccctgtaagttcgcgcgtttttggtttt 260  Q
    |||||||||| |||||||||||||||||||||||| ||||||||||||    
T  46245122 ggcttaaatatgtaaaaggtccctgtaagttcgcgtgtttttggtttt 46245169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 212 - 270
Target Start/End: Original strand, 12178482 - 12178540
Alignment:
Q  212 aggcttaaataagtaaaaggtccctgtaagttcgcgcgtttttggttttagcccctgta 270  Q
    ||||||||||| ||||||||||||| |||||||||| |||||||||||| | |||||||    
T  12178482 aggcttaaatatgtaaaaggtccctctaagttcgcgtgtttttggttttcgtccctgta 12178540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 374 - 477
Target Start/End: Original strand, 38756847 - 38756953
Alignment:
Q  374 caactggtcttagtagagggactaaaaccaaaaacgcatttttacgtaggga-tgaaatt-aaaaatcttaattatc-aatttttgaattttaaaaacca 470  Q
    |||||| ||||||||||||||||||||| |||||| ||||||||| |||||| | ||||| ||||| | |||| ||| |||||||||| ||| ||| |||    
T  38756847 caactgctcttagtagagggactaaaacgaaaaacacatttttacatagggactaaaattaaaaaaacgtaatcatcaaatttttgaaattttaaatcca 38756946  T
Q  471 atctttc 477  Q
    |||||||    
T  38756947 atctttc 38756953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 211 - 260
Target Start/End: Complemental strand, 27162056 - 27162007
Alignment:
Q  211 taggcttaaataagtaaaaggtccctgtaagttcgcgcgtttttggtttt 260  Q
    |||||||||||| |||||||||||||||||||||||| | ||||||||||    
T  27162056 taggcttaaatatgtaaaaggtccctgtaagttcgcgagattttggtttt 27162007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 213 - 270
Target Start/End: Original strand, 38756655 - 38756712
Alignment:
Q  213 ggcttaaataagtaaaaggtccctgtaagttcgcgcgtttttggttttagcccctgta 270  Q
    ||||||||||   |||||||||||||||||| |||||||||||||||||| |||||||    
T  38756655 ggcttaaatattaaaaaggtccctgtaagttagcgcgtttttggttttagtccctgta 38756712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 383 - 466
Target Start/End: Original strand, 27160506 - 27160592
Alignment:
Q  383 ttagtagagggactaaaaccaaaaacgcatttttacgtagggatgaaattaaaaat---cttaattatcaatttttgaattttaaaa 466  Q
    |||||| ||||||||||| ||||||||||||||||| ||||||  ||||||||||    | ||||  ||||||||||||||||||||    
T  27160506 ttagtatagggactaaaatcaaaaacgcatttttacatagggactaaattaaaaaataacgtaatcttcaatttttgaattttaaaa 27160592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 212 - 268
Target Start/End: Complemental strand, 37556592 - 37556536
Alignment:
Q  212 aggcttaaataagtaaaaggtccctgtaagttcgcgcgtttttggttttagcccctg 268  Q
    ||||||||||||||||||||||||||||| || | |||||||| ||||||| |||||    
T  37556592 aggcttaaataagtaaaaggtccctgtaaattggtgcgttttttgttttagtccctg 37556536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 211 - 270
Target Start/End: Complemental strand, 13420347 - 13420288
Alignment:
Q  211 taggcttaaataagtaaaaggtccctgtaagttcgcgcgtttttggttttagcccctgta 270  Q
    |||||||||||| ||||| || ||||||||||| ||| |||||||||||||| |||||||    
T  13420347 taggcttaaatatgtaaatggcccctgtaagtttgcgtgtttttggttttagtccctgta 13420288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 211 - 270
Target Start/End: Original strand, 27160303 - 27160362
Alignment:
Q  211 taggcttaaataagtaaaaggtccctgtaagttcgcgcgtttttggttttagcccctgta 270  Q
    |||||||||||||||||||||||| |||||||||| | | |||||||||| | |||||||    
T  27160303 taggcttaaataagtaaaaggtccttgtaagttcgtgagattttggttttcgtccctgta 27160362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 211 - 270
Target Start/End: Complemental strand, 41385870 - 41385811
Alignment:
Q  211 taggcttaaataagtaaaaggtccctgtaagttcgcgcgtttttggttttagcccctgta 270  Q
    |||||||||||| ||||| ||||||||||||||||||| ||||| ||||| | |||||||    
T  41385870 taggcttaaatatgtaaatggtccctgtaagttcgcgcattttttgttttggtccctgta 41385811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 216 - 270
Target Start/End: Complemental strand, 37350260 - 37350206
Alignment:
Q  216 ttaaataagtaaaaggtccctgtaagttcgcgcgtttttggttttagcccctgta 270  Q
    ||||||| ||||| |||||| ||||||||||| ||||||||||||||||| ||||    
T  37350260 ttaaatatgtaaatggtccccgtaagttcgcgtgtttttggttttagcccatgta 37350206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 388 - 490
Target Start/End: Original strand, 41384355 - 41384457
Alignment:
Q  388 agagggactaaaaccaaaaacgcatttttacgtagggatgaaattaaaaatcttaattatcaatttttgaattttaaaaaccaatctttctttcttcttc 487  Q
    |||||||||||||||||||||| |  || || |||||||||| |||||||   |||  ||||| || ||||||||||||| ||| |||||  ||||||||    
T  41384355 agagggactaaaaccaaaaacgaaaattgacatagggatgaatttaaaaaaaataaacatcaaattctgaattttaaaaatcaaactttccatcttcttc 41384454  T
Q  488 ctc 490  Q
    |||    
T  41384455 ctc 41384457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 212 - 270
Target Start/End: Original strand, 41591514 - 41591572
Alignment:
Q  212 aggcttaaataagtaaaaggtccctgtaagttcgcgcgtttttggttttagcccctgta 270  Q
    ||||||||||| ||||||||||||||||| ||||||| ||||| ||||| | |||||||    
T  41591514 aggcttaaatatgtaaaaggtccctgtaatttcgcgcattttttgttttcgtccctgta 41591572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 216 - 270
Target Start/End: Complemental strand, 44816162 - 44816108
Alignment:
Q  216 ttaaataagtaaaaggtccctgtaagttcgcgcgtttttggttttagcccctgta 270  Q
    ||||||||| ||||||||||| |||| |||||||||||| ||||||| |||||||    
T  44816162 ttaaataagaaaaaggtccctataagatcgcgcgttttttgttttagtccctgta 44816108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 213 - 270
Target Start/End: Complemental strand, 41593262 - 41593205
Alignment:
Q  213 ggcttaaataagtaaaaggtccctgtaagttcgcgcgtttttggttttagcccctgta 270  Q
    |||||||||| ||||| |||||||||||||||| || ||||||||||| | |||||||    
T  41593262 ggcttaaatatgtaaatggtccctgtaagttcgtgcatttttggttttggtccctgta 41593205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 383 - 450
Target Start/End: Complemental strand, 5975523 - 5975456
Alignment:
Q  383 ttagtagagggactaaaaccaaaaacgcatttttacgtagggatgaaattaaaaatcttaattatcaa 450  Q
    ||||||||||||||||||| ||||| |||  ||||| |||||| ||||||||||| | |||| |||||    
T  5975523 ttagtagagggactaaaacaaaaaatgcaaatttacatagggacgaaattaaaaaacataatcatcaa 5975456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 213 - 260
Target Start/End: Original strand, 11669841 - 11669888
Alignment:
Q  213 ggcttaaataagtaaaaggtccctgtaagttcgcgcgtttttggtttt 260  Q
    |||||||||| ||||| |||||||||||||||||  ||||||||||||    
T  11669841 ggcttaaatatgtaaacggtccctgtaagttcgcatgtttttggtttt 11669888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 212 - 259
Target Start/End: Original strand, 30045787 - 30045834
Alignment:
Q  212 aggcttaaataagtaaaaggtccctgtaagttcgcgcgtttttggttt 259  Q
    ||||||||||||||| |||||||| ||||||| |||||||||| ||||    
T  30045787 aggcttaaataagtagaaggtccccgtaagttagcgcgttttttgttt 30045834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 383 - 466
Target Start/End: Complemental strand, 27161853 - 27161768
Alignment:
Q  383 ttagtagagggactaaaaccaaaaacgcatttttacgtagggatgaaatta--aaaatcttaattatcaatttttgaattttaaaa 466  Q
    |||||| || |||||||||||||||| ||||||||| |||| |  ||||||  |||| | ||||  ||||||||||||||||||||    
T  27161853 ttagtatagtgactaaaaccaaaaacacatttttacataggaactaaattaagaaaaacgtaatcttcaatttttgaattttaaaa 27161768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 213 - 267
Target Start/End: Original strand, 37348735 - 37348789
Alignment:
Q  213 ggcttaaataagtaaaaggtccctgtaagttcgcgcgtttttggttttagcccct 267  Q
    |||||||||  ||||| |||||| ||||||||||| |||||||||||||| ||||    
T  37348735 ggcttaaatttgtaaatggtccccgtaagttcgcgtgtttttggttttagtccct 37348789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 212 - 270
Target Start/End: Original strand, 41384148 - 41384206
Alignment:
Q  212 aggcttaaataagtaaaaggtccctgtaagttcgcgcgtttttggttttagcccctgta 270  Q
    ||||||||||| ||||| ||||| ||||||||||||| ||||| ||||| | |||||||    
T  41384148 aggcttaaatatgtaaatggtccttgtaagttcgcgcattttttgttttggtccctgta 41384206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 375 - 408
Target Start/End: Original strand, 19638722 - 19638755
Alignment:
Q  375 aactggtcttagtagagggactaaaaccaaaaac 408  Q
    ||||||||||||||||||||||||||| ||||||    
T  19638722 aactggtcttagtagagggactaaaacaaaaaac 19638755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 211 - 255
Target Start/End: Original strand, 28848556 - 28848600
Alignment:
Q  211 taggcttaaataagtaaaaggtccctgtaagttcgcgcgtttttg 255  Q
    |||||||||||| |||||| |||||||||| |||||| |||||||    
T  28848556 taggcttaaatatgtaaaacgtccctgtaatttcgcgtgtttttg 28848600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 212 - 260
Target Start/End: Complemental strand, 37133709 - 37133661
Alignment:
Q  212 aggcttaaataagtaaaaggtccctgtaagttcgcgcgtttttggtttt 260  Q
    ||||||||||| |||||  ||||| ||||||||||| ||||||||||||    
T  37133709 aggcttaaatatgtaaatcgtccccgtaagttcgcgtgtttttggtttt 37133661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 211 - 255
Target Start/End: Complemental strand, 43546791 - 43546747
Alignment:
Q  211 taggcttaaataagtaaaaggtccctgtaagttcgcgcgtttttg 255  Q
    |||||||||||| |||||| |||||||||| |||||| |||||||    
T  43546791 taggcttaaatatgtaaaacgtccctgtaatttcgcgtgtttttg 43546747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 49; Significance: 8e-19; HSPs: 30)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 369 - 437
Target Start/End: Original strand, 11148528 - 11148596
Alignment:
Q  369 gttgacaactggtcttagtagagggactaaaaccaaaaacgcatttttacgtagggatgaaattaaaaa 437  Q
    |||| |||||| |||||||||||||||||||||||||||| ||||||||| |||||| |||||||||||    
T  11148528 gttggcaactgatcttagtagagggactaaaaccaaaaacacatttttacatagggacgaaattaaaaa 11148596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 211 - 270
Target Start/End: Original strand, 2671539 - 2671598
Alignment:
Q  211 taggcttaaataagtaaaaggtccctgtaagttcgcgcgtttttggttttagcccctgta 270  Q
    |||||||||||||| ||||||||||||||||||||||| ||||||||||||| |||||||    
T  2671539 taggcttaaataagaaaaaggtccctgtaagttcgcgcatttttggttttagtccctgta 2671598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 211 - 262
Target Start/End: Original strand, 11148348 - 11148399
Alignment:
Q  211 taggcttaaataagtaaaaggtccctgtaagttcgcgcgtttttggttttag 262  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  11148348 taggcttaaataagtaaaaggtccctgtaagttagcgcgtttttggttttag 11148399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 374 - 477
Target Start/End: Original strand, 34538313 - 34538419
Alignment:
Q  374 caactggtcttagtagagggactaaaaccaaaaacgcatttttacgtaggga-tgaaatt-aaaaatcttaattatc-aatttttgaattttaaaaacca 470  Q
    |||||| ||||||||||||||||||||| |||||||||||||||| |||||| ||||||| ||||| | |||| ||| |||||||||| ||| ||| |||    
T  34538313 caactgctcttagtagagggactaaaacgaaaaacgcatttttacatagggactgaaattaaaaaaacgtaatcatcaaatttttgaaattttaaaccca 34538412  T
Q  471 atctttc 477  Q
    |||||||    
T  34538413 atctttc 34538419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 369 - 437
Target Start/End: Complemental strand, 34539679 - 34539612
Alignment:
Q  369 gttgacaactggtcttagtagagggactaaaaccaaaaacgcatttttacgtagggatgaaattaaaaa 437  Q
    |||| ||||||||||||||||||||||||||| |||||| |||||||||| |||||| |||||||||||    
T  34539679 gttggcaactggtcttagtagagggactaaaa-caaaaaagcatttttacatagggacgaaattaaaaa 34539612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 212 - 270
Target Start/End: Original strand, 4906128 - 4906186
Alignment:
Q  212 aggcttaaataagtaaaaggtccctgtaagttcgcgcgtttttggttttagcccctgta 270  Q
    ||||||||||| ||||||||||||||||||||||||| ||||||||||| | |||||||    
T  4906128 aggcttaaatatgtaaaaggtccctgtaagttcgcgcatttttggttttcgtccctgta 4906186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 213 - 270
Target Start/End: Original strand, 4931998 - 4932055
Alignment:
Q  213 ggcttaaataagtaaaaggtccctgtaagttcgcgcgtttttggttttagcccctgta 270  Q
    |||||||||| ||||||||||||||||||||||||| ||||||||||| | |||||||    
T  4931998 ggcttaaatatgtaaaaggtccctgtaagttcgcgcatttttggttttcgtccctgta 4932055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 383 - 490
Target Start/End: Complemental strand, 2672821 - 2672713
Alignment:
Q  383 ttagtagagggactaaaaccaaaaacgcatttttacgtagggatgaaatt-aaaaatcttaattatcaatttttgaattttaaaaaccaatctttctttc 481  Q
    |||||| |||||||||||||||||||||| ||| || ||| ||| || || ||||| | |||| |||||||||  |||||||||||| | |||||| |||    
T  2672821 ttagtatagggactaaaaccaaaaacgcaatttaacatagagattaatttaaaaaaacgtaatcatcaattttaaaattttaaaaactagtctttccttc 2672722  T
Q  482 ttcttcctc 490  Q
    |||||||||    
T  2672721 ttcttcctc 2672713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 212 - 260
Target Start/End: Complemental strand, 4933391 - 4933343
Alignment:
Q  212 aggcttaaataagtaaaaggtccctgtaagttcgcgcgtttttggtttt 260  Q
    ||||||||||| ||||||||||||||||||||||||| |||||||||||    
T  4933391 aggcttaaatatgtaaaaggtccctgtaagttcgcgcatttttggtttt 4933343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 210 - 270
Target Start/End: Original strand, 22307668 - 22307728
Alignment:
Q  210 ataggcttaaataagtaaaaggtccctgtaagttcgcgcgtttttggttttagcccctgta 270  Q
    ||||||||||||| | |||||||||||||||||||||  |||||||||||||| |||||||    
T  22307668 ataggcttaaatatgcaaaaggtccctgtaagttcgcatgtttttggttttagtccctgta 22307728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 212 - 260
Target Start/End: Original strand, 29756271 - 29756319
Alignment:
Q  212 aggcttaaataagtaaaaggtccctgtaagttcgcgcgtttttggtttt 260  Q
    ||||||||||| ||||||||||||||||||||||||| |||||||||||    
T  29756271 aggcttaaatatgtaaaaggtccctgtaagttcgcgcatttttggtttt 29756319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 387 - 466
Target Start/End: Original strand, 2671736 - 2671815
Alignment:
Q  387 tagagggactaaaaccaaaaacgcatttttacgtagggatgaaattaaaaatcttaattatcaatttttgaattttaaaa 466  Q
    |||||||||||||||||||||||||  ||||| |||||| |||| |||||| | |||| |||||  ||||||||||||||    
T  2671736 tagagggactaaaaccaaaaacgcaaatttacatagggacgaaaataaaaaacataatcatcaaaatttgaattttaaaa 2671815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 213 - 260
Target Start/End: Complemental strand, 4907520 - 4907473
Alignment:
Q  213 ggcttaaataagtaaaaggtccctgtaagttcgcgcgtttttggtttt 260  Q
    |||||||||| ||||||||||||||||||||||||| |||||||||||    
T  4907520 ggcttaaatatgtaaaaggtccctgtaagttcgcgcatttttggtttt 4907473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 211 - 270
Target Start/End: Complemental strand, 29757669 - 29757610
Alignment:
Q  211 taggcttaaataagtaaaaggtccctgtaagttcgcgcgtttttggttttagcccctgta 270  Q
    |||||||||||| ||||||||||||||||||||| ||| ||||||||||| | |||||||    
T  29757669 taggcttaaatatgtaaaaggtccctgtaagttcacgcatttttggttttcgtccctgta 29757610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 216 - 270
Target Start/End: Complemental strand, 22309194 - 22309140
Alignment:
Q  216 ttaaataagtaaaaggtccctgtaagttcgcgcgtttttggttttagcccctgta 270  Q
    ||||||| ||||| |||||||||||||||||| |||||||||||||| |||||||    
T  22309194 ttaaatatgtaaatggtccctgtaagttcgcgtgtttttggttttagtccctgta 22309140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 214 - 260
Target Start/End: Complemental strand, 33609402 - 33609356
Alignment:
Q  214 gcttaaataagtaaaaggtccctgtaagttcgcgcgtttttggtttt 260  Q
    ||||||||| |||||||||||||||||||||||| ||||||||||||    
T  33609402 gcttaaatatgtaaaaggtccctgtaagttcgcgtgtttttggtttt 33609356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 208 - 262
Target Start/End: Original strand, 34538121 - 34538175
Alignment:
Q  208 taataggcttaaataagtaaaaggtccctgtaagttcgcgcgtttttggttttag 262  Q
    ||||||||||||||| |||||||||||| ||||||| || |||||||||||||||    
T  34538121 taataggcttaaatatgtaaaaggtcccggtaagttagcacgtttttggttttag 34538175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 211 - 260
Target Start/End: Complemental strand, 23703924 - 23703875
Alignment:
Q  211 taggcttaaataagtaaaaggtccctgtaagttcgcgcgtttttggtttt 260  Q
    |||||||||||| ||||||||||||| ||||||||||| |||||||||||    
T  23703924 taggcttaaatatgtaaaaggtccctctaagttcgcgcatttttggtttt 23703875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 215 - 260
Target Start/End: Complemental strand, 35786737 - 35786692
Alignment:
Q  215 cttaaataagtaaaaggtccctgtaagttcgcgcgtttttggtttt 260  Q
    |||||||| ||||||||||||||||||||||||| |||||||||||    
T  35786737 cttaaatatgtaaaaggtccctgtaagttcgcgcatttttggtttt 35786692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 441 - 490
Target Start/End: Complemental strand, 20947413 - 20947364
Alignment:
Q  441 taattatcaatttttgaattttaaaaaccaatctttctttcttcttcctc 490  Q
    |||| |||||||||| |||||||||||||| |||||| ||||||||||||    
T  20947413 taatcatcaatttttaaattttaaaaaccagtctttccttcttcttcctc 20947364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 212 - 261
Target Start/End: Complemental strand, 34539857 - 34539809
Alignment:
Q  212 aggcttaaataagtaaaaggtccctgtaagttcgcgcgtttttggtttta 261  Q
    ||||||||||||||||| ||||| |||||||| |||||||||||||||||    
T  34539857 aggcttaaataagtaaa-ggtccatgtaagttagcgcgtttttggtttta 34539809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 216 - 260
Target Start/End: Original strand, 33607471 - 33607515
Alignment:
Q  216 ttaaataagtaaaaggtccctgtaagttcgcgcgtttttggtttt 260  Q
    ||||||| |||||||||| ||||||||||||| ||||||||||||    
T  33607471 ttaaatatgtaaaaggtctctgtaagttcgcgtgtttttggtttt 33607515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 211 - 262
Target Start/End: Complemental strand, 2673024 - 2672973
Alignment:
Q  211 taggcttaaataagtaaaaggtccctgtaagttcgcgcgtttttggttttag 262  Q
    |||||||||||||||||||| ||  |||||||| |||| |||||||||||||    
T  2673024 taggcttaaataagtaaaagatctatgtaagttggcgcatttttggttttag 2672973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 211 - 262
Target Start/End: Original strand, 20945859 - 20945910
Alignment:
Q  211 taggcttaaataagtaaaaggtccctgtaagttcgcgcgtttttggttttag 262  Q
    |||||||||||||| ||||||||  ||||||||||||| ||||| |||||||    
T  20945859 taggcttaaataagaaaaaggtctttgtaagttcgcgcattttttgttttag 20945910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 215 - 262
Target Start/End: Original strand, 28426836 - 28426883
Alignment:
Q  215 cttaaataagtaaaaggtccctgtaagttcgcgcgtttttggttttag 262  Q
    |||||||||||||||||||| |||||||| |||| ||||| |||||||    
T  28426836 cttaaataagtaaaaggtccatgtaagttggcgcattttttgttttag 28426883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 212 - 258
Target Start/End: Complemental strand, 20947652 - 20947606
Alignment:
Q  212 aggcttaaataagtaaaaggtccctgtaagttcgcgcgtttttggtt 258  Q
    |||||||||||||||||| |||||| |||||| |||| |||||||||    
T  20947652 aggcttaaataagtaaaaagtccctctaagttggcgcatttttggtt 20947606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 214 - 260
Target Start/End: Original strand, 23702398 - 23702444
Alignment:
Q  214 gcttaaataagtaaaaggtccctgtaagttcgcgcgtttttggtttt 260  Q
    ||||||||| ||||||||||| ||||||||||||| ||||| |||||    
T  23702398 gcttaaatatgtaaaaggtccttgtaagttcgcgcattttttgtttt 23702444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 215 - 260
Target Start/End: Original strand, 22674154 - 22674199
Alignment:
Q  215 cttaaataagtaaaaggtccctgtaagttcgcgcgtttttggtttt 260  Q
    |||||||| ||||||||||||| ||||||||||| ||||| |||||    
T  22674154 cttaaatatgtaaaaggtccctataagttcgcgcattttttgtttt 22674199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 210 - 270
Target Start/End: Original strand, 19994495 - 19994555
Alignment:
Q  210 ataggcttaaataagtaaaaggtccctgtaagttcgcgcgtttttggttttagcccctgta 270  Q
    ||||||||||||| |||||  |||||||||| || ||| |||||||||||| | |||||||    
T  19994495 ataggcttaaatatgtaaatcgtccctgtaatttggcgtgtttttggttttcgtccctgta 19994555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 216 - 260
Target Start/End: Original strand, 39665274 - 39665318
Alignment:
Q  216 ttaaataagtaaaaggtccctgtaagttcgcgcgtttttggtttt 260  Q
    ||||||| ||||| ||||||||||||||||||| ||||| |||||    
T  39665274 ttaaatatgtaaatggtccctgtaagttcgcgcattttttgtttt 39665318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 46; Significance: 5e-17; HSPs: 18)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 209 - 270
Target Start/End: Original strand, 357973 - 358034
Alignment:
Q  209 aataggcttaaataagtaaaaggtccctgtaagttcgcgcgtttttggttttagcccctgta 270  Q
    |||||||||||||| ||||||||||||||||||||||||| ||||||||||| | |||||||    
T  357973 aataggcttaaatatgtaaaaggtccctgtaagttcgcgcatttttggttttcgtccctgta 358034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 210 - 270
Target Start/End: Original strand, 7272897 - 7272957
Alignment:
Q  210 ataggcttaaataagtaaaaggtccctgtaagttcgcgcgtttttggttttagcccctgta 270  Q
    |||||||||||||||||||||||| ||||||||| |||| ||||||||||||| |||||||    
T  7272897 ataggcttaaataagtaaaaggtctctgtaagttggcgcatttttggttttagtccctgta 7272957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 343 - 490
Target Start/End: Original strand, 7273061 - 7273209
Alignment:
Q  343 acgtggcatttggtgagttgtcaattgttgacaactggtcttagtagagggactaaaaccaaaaacgcatttttacgtagggatgaaattaaaaat-ctt 441  Q
    |||||||| || |||||||| || | |||||  |||||  ||| || |||||||||||||||||| ||| ||| || ||||||  || |||||||  | |    
T  7273061 acgtggcacttcgtgagttggcactagttgatgactggggttaatatagggactaaaaccaaaaatgcaatttaacatagggactaatttaaaaaaacgt 7273160  T
Q  442 aattatcaatttttgaattttaaaaaccaatctttctttcttcttcctc 490  Q
    ||| |||||||||| |||||||||||||| |||||| ||||||||||||    
T  7273161 aatcatcaatttttaaattttaaaaaccagtctttccttcttcttcctc 7273209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 210 - 270
Target Start/End: Complemental strand, 39886138 - 39886078
Alignment:
Q  210 ataggcttaaataagtaaaaggtccctgtaagttcgcgcgtttttggttttagcccctgta 270  Q
    ||||||||||||| ||||| |||||||||||||||||| |||||||||||||| |||||||    
T  39886138 ataggcttaaatatgtaaatggtccctgtaagttcgcgtgtttttggttttagtccctgta 39886078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 212 - 270
Target Start/End: Original strand, 39884615 - 39884673
Alignment:
Q  212 aggcttaaataagtaaaaggtccctgtaagttcgcgcgtttttggttttagcccctgta 270  Q
    ||||||||||| ||||| |||||||||||||||||| |||||||||||||| |||||||    
T  39884615 aggcttaaatatgtaaatggtccctgtaagttcgcgtgtttttggttttagtccctgta 39884673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 207 - 262
Target Start/End: Original strand, 17706159 - 17706214
Alignment:
Q  207 ataataggcttaaataagtaaaaggtccctgtaagttcgcgcgtttttggttttag 262  Q
    |||||||||||||||| ||||||||||||||||| || ||| ||||||||||||||    
T  17706159 ataataggcttaaatatgtaaaaggtccctgtaatttagcgtgtttttggttttag 17706214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 212 - 262
Target Start/End: Complemental strand, 7274711 - 7274661
Alignment:
Q  212 aggcttaaataagtaaaaggtccctgtaagttcgcgcgtttttggttttag 262  Q
    ||||||||||||| ||||||||||||||||||||||| ||||| |||||||    
T  7274711 aggcttaaataagaaaaaggtccctgtaagttcgcgcattttttgttttag 7274661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 212 - 270
Target Start/End: Original strand, 36899897 - 36899955
Alignment:
Q  212 aggcttaaataagtaaaaggtccctgtaagttcgcgcgtttttggttttagcccctgta 270  Q
    ||||||||||| ||||||||||||||||| || ||| |||||||||||||| |||||||    
T  36899897 aggcttaaatatgtaaaaggtccctgtaatttagcgtgtttttggttttagtccctgta 36899955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 209 - 270
Target Start/End: Complemental strand, 3158100 - 3158039
Alignment:
Q  209 aataggcttaaataagtaaaaggtccctgtaagttcgcgcgtttttggttttagcccctgta 270  Q
    |||||||||||||| |||||  ||||||||||||||||| |||||||||||| | |||||||    
T  3158100 aataggcttaaatatgtaaatcgtccctgtaagttcgcgtgtttttggttttcgtccctgta 3158039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 212 - 260
Target Start/End: Complemental strand, 359374 - 359326
Alignment:
Q  212 aggcttaaataagtaaaaggtccctgtaagttcgcgcgtttttggtttt 260  Q
    ||||||||||| ||||||||||||||||||||||||| ||||| |||||    
T  359374 aggcttaaatatgtaaaaggtccctgtaagttcgcgcattttttgtttt 359326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 389 - 477
Target Start/End: Original strand, 44690247 - 44690334
Alignment:
Q  389 gagggactaaaaccaaaaacgcatttttacgtagggatgaaattaaaaatcttaattatcaatttttgaattttaaaaaccaatctttc 477  Q
    ||||||||||||||||||||  || ||||| |||| ||||||||||||| | |||| ||| | ||||||| ||||||||||||| ||||    
T  44690247 gagggactaaaaccaaaaacaaatatttacatagg-atgaaattaaaaaacgtaatcatcgaattttgaaatttaaaaaccaatatttc 44690334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 387 - 466
Target Start/End: Complemental strand, 7274516 - 7274437
Alignment:
Q  387 tagagggactaaaaccaaaaacgcatttttacgtagggatgaaattaaaaatcttaattatcaatttttgaattttaaaa 466  Q
    ||||| ||||||||||||||| |||  ||||| ||||||||||| |||||| | |||| |||||  ||||||||||||||    
T  7274516 tagagagactaaaaccaaaaatgcaaatttacatagggatgaaaataaaaaacataatcatcaaaatttgaattttaaaa 7274437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 213 - 260
Target Start/End: Complemental strand, 45448551 - 45448504
Alignment:
Q  213 ggcttaaataagtaaaaggtccctgtaagttcgcgcgtttttggtttt 260  Q
    |||||||||| ||||||||||||| |||||||||| ||||||||||||    
T  45448551 ggcttaaatatgtaaaaggtccctctaagttcgcgtgtttttggtttt 45448504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 214 - 260
Target Start/End: Original strand, 21142480 - 21142526
Alignment:
Q  214 gcttaaataagtaaaaggtccctgtaagttcgcgcgtttttggtttt 260  Q
    ||||||||| ||||||||||||||||||||||||| ||||| |||||    
T  21142480 gcttaaatatgtaaaaggtccctgtaagttcgcgcattttttgtttt 21142526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 212 - 262
Target Start/End: Original strand, 45447004 - 45447054
Alignment:
Q  212 aggcttaaataagtaaaaggtccctgtaagttcgcgcgtttttggttttag 262  Q
    ||||||||||||| |||| |||||||||||| ||| |||||||||||||||    
T  45447004 aggcttaaataagaaaaatgtccctgtaagtccgcacgtttttggttttag 45447054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 210 - 270
Target Start/End: Complemental strand, 17707510 - 17707450
Alignment:
Q  210 ataggcttaaataagtaaaaggtccctgtaagttcgcgcgtttttggttttagcccctgta 270  Q
    ||||||||||||| ||||| ||||| ||||| || ||| |||||||||||||| |||||||    
T  17707510 ataggcttaaatatgtaaatggtccatgtaatttagcgtgtttttggttttagtccctgta 17707450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 211 - 262
Target Start/End: Complemental strand, 36901238 - 36901187
Alignment:
Q  211 taggcttaaataagtaaaaggtccctgtaagttcgcgcgtttttggttttag 262  Q
    |||||||||||| ||||||||||||||||| || ||| ||||||| ||||||    
T  36901238 taggcttaaatatgtaaaaggtccctgtaatttagcgtgtttttgtttttag 36901187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 212 - 267
Target Start/End: Complemental strand, 25562846 - 25562790
Alignment:
Q  212 aggcttaaataagtaaaa-ggtccctgtaagttcgcgcgtttttggttttagcccct 267  Q
    ||||||||||||| |||| |||| |||||||||||| |||||||| |||||| ||||    
T  25562846 aggcttaaataaggaaaaaggtcactgtaagttcgcacgtttttgattttagtccct 25562790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 45; Significance: 2e-16; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 371 - 487
Target Start/End: Original strand, 1134328 - 1134443
Alignment:
Q  371 tgacaactggtcttagtagagggactaaaaccaaaaacgcatttttacgtagggatgaaattaaaaatcttaattatcaatttttgaattttaaaaacca 470  Q
    |||||||||| |||||||||||||||||| | |||||||||| ||||| ||||||  |||||| ||| | |||| ||||||||||||| |||||||  ||    
T  1134328 tgacaactggacttagtagagggactaaatc-aaaaacgcatatttacatagggacaaaattagaaaacataatcatcaatttttgaaatttaaaactca 1134426  T
Q  471 atctttctttcttcttc 487  Q
     |||||||  |||||||    
T  1134427 ttctttctaacttcttc 1134443  T

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Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 208 - 270
Target Start/End: Original strand, 7796744 - 7796806
Alignment:
Q  208 taataggcttaaataagtaaaaggtccctgtaagttcgcgcgtttttggttttagcccctgta 270  Q
    ||||||||||||||| |||||||||||| |||||||||||| ||||||||||| | |||||||    
T  7796744 taataggcttaaatatgtaaaaggtcccagtaagttcgcgcatttttggtttttgtccctgta 7796806  T

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Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 212 - 260
Target Start/End: Complemental strand, 843581 - 843533
Alignment:
Q  212 aggcttaaataagtaaaaggtccctgtaagttcgcgcgtttttggtttt 260  Q
    ||||||||||| ||||||||||||||||||||||||| |||||||||||    
T  843581 aggcttaaatatgtaaaaggtccctgtaagttcgcgcatttttggtttt 843533  T

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Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 212 - 270
Target Start/End: Complemental strand, 11065714 - 11065656
Alignment:
Q  212 aggcttaaataagtaaaaggtccctgtaagttcgcgcgtttttggttttagcccctgta 270  Q
    ||||||||||| ||||||||||| ||||||||||||| ||||||||||| | |||||||    
T  11065714 aggcttaaatatgtaaaaggtccttgtaagttcgcgcatttttggttttcgtccctgta 11065656  T

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Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 388 - 437
Target Start/End: Complemental strand, 28050193 - 28050144
Alignment:
Q  388 agagggactaaaaccaaaaacgcatttttacgtagggatgaaattaaaaa 437  Q
    |||||||||||||  |||||||||| ||||||||||||||||||||||||    
T  28050193 agagggactaaaataaaaaacgcatatttacgtagggatgaaattaaaaa 28050144  T

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Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 204 - 270
Target Start/End: Original strand, 1443408 - 1443474
Alignment:
Q  204 ttaataataggcttaaataagtaaaaggtccctgtaagttcgcgcgtttttggttttagcccctgta 270  Q
    |||||||  |||||||||| || |||||||||||||||||| || |||||||||||| | |||||||    
T  1443408 ttaataaagggcttaaatatgtgaaaggtccctgtaagttcacgtgtttttggttttcgtccctgta 1443474  T

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Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 213 - 270
Target Start/End: Original strand, 842186 - 842243
Alignment:
Q  213 ggcttaaataagtaaaaggtccctgtaagttcgcgcgtttttggttttagcccctgta 270  Q
    |||||||||| ||| ||||||||||||||||||||| ||||| ||||| | |||||||    
T  842186 ggcttaaatatgtataaggtccctgtaagttcgcgcattttttgttttcgtccctgta 842243  T

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Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 211 - 260
Target Start/End: Complemental strand, 19598038 - 19597989
Alignment:
Q  211 taggcttaaataagtaaaaggtccctgtaagttcgcgcgtttttggtttt 260  Q
    |||||||||||| ||||| ||||||||||||| ||||| |||||||||||    
T  19598038 taggcttaaatatgtaaatggtccctgtaagtccgcgcatttttggtttt 19597989  T

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Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 211 - 270
Target Start/End: Complemental strand, 19402183 - 19402124
Alignment:
Q  211 taggcttaaataagtaaaaggtccctgtaagttcgcgcgtttttggttttagcccctgta 270  Q
    |||||||||||| ||||||||||| ||||||||||| | ||||| ||||| | |||||||    
T  19402183 taggcttaaatatgtaaaaggtccttgtaagttcgcacattttttgttttcgtccctgta 19402124  T

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Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 206 - 260
Target Start/End: Original strand, 28048973 - 28049027
Alignment:
Q  206 aataataggcttaaataagtaaaaggtccctgtaagttcgcgcgtttttggtttt 260  Q
    ||||| |||||||||||  | ||||||| ||||||||||||| ||||||||||||    
T  28048973 aataaaaggcttaaatatatcaaaggtctctgtaagttcgcgtgtttttggtttt 28049027  T

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Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 216 - 270
Target Start/End: Complemental strand, 30321220 - 30321166
Alignment:
Q  216 ttaaataagtaaaaggtccctgtaagttcgcgcgtttttggttttagcccctgta 270  Q
    ||||||| |||||||||| ||||||||||| || ||||||||||| | |||||||    
T  30321220 ttaaatatgtaaaaggtctctgtaagttcgtgcatttttggttttcgtccctgta 30321166  T

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Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 212 - 260
Target Start/End: Original strand, 19596342 - 19596390
Alignment:
Q  212 aggcttaaataagtaaaaggtccctgtaagttcgcgcgtttttggtttt 260  Q
    ||||||||||| |||||  |||||| ||||||||||| |||||||||||    
T  19596342 aggcttaaatatgtaaattgtccctataagttcgcgcatttttggtttt 19596390  T

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Target: scaffold0129 (Bit Score: 44; Significance: 8e-16; HSPs: 1)
Name: scaffold0129
Description:

Target: scaffold0129; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 211 - 270
Target Start/End: Complemental strand, 4318 - 4259
Alignment:
Q  211 taggcttaaataagtaaaaggtccctgtaagttcgcgcgtttttggttttagcccctgta 270  Q
    |||||||||||| ||||||||||||||||||||||||| ||||||||||| | |||||||    
T  4318 taggcttaaatatgtaaaaggtccctgtaagttcgcgcatttttggttttcgtccctgta 4259  T

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Target: scaffold0517 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: scaffold0517
Description:

Target: scaffold0517; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 396 - 490
Target Start/End: Original strand, 5602 - 5696
Alignment:
Q  396 taaaaccaaaaacgcatttttacgtagggatgaaattaaaaatcttaattatcaatttttgaattttaaaaaccaatctttctttcttcttcctc 490  Q
    |||||||||||| |||  ||||| |||||||||||||||||| | |||  ||||| |||||||||||||||||||| || ||  |||||||||||    
T  5602 taaaaccaaaaatgcaaatttacatagggatgaaattaaaaaacgtaaaaatcaaattttgaattttaaaaaccaaactgtccatcttcttcctc 5696  T

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Target: scaffold0517; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 383 - 489
Target Start/End: Complemental strand, 6854 - 6747
Alignment:
Q  383 ttagtagagggactaaaacca-aaaacgcatttttacgtagggatgaaattaaaaatcttaattatcaatttttgaattttaaaaaccaatctttctttc 481  Q
    |||||| |||||||||||||| ||||| ||  ||||| |||||||||| |||||||   |||  ||||| |||||| ||||||||||||| ||||   ||    
T  6854 ttagtacagggactaaaaccaaaaaacacaaatttacatagggatgaagttaaaaaaggtaaacatcaaattttgatttttaaaaaccaaacttttcatc 6755  T
Q  482 ttcttcct 489  Q
    ||||||||    
T  6754 ttcttcct 6747  T

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Target: scaffold0280 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: scaffold0280
Description:

Target: scaffold0280; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 211 - 270
Target Start/End: Original strand, 12129 - 12188
Alignment:
Q  211 taggcttaaataagtaaaaggtccctgtaagttcgcgcgtttttggttttagcccctgta 270  Q
    |||||||||||| ||||||||| || ||||||||||| |||||||||||| | |||||||    
T  12129 taggcttaaatatgtaaaaggttccggtaagttcgcgtgtttttggttttcgtccctgta 12188  T

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Target: scaffold0060 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold0060
Description:

Target: scaffold0060; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 211 - 260
Target Start/End: Complemental strand, 13312 - 13263
Alignment:
Q  211 taggcttaaataagtaaaaggtccctgtaagttcgcgcgtttttggtttt 260  Q
    |||||||||||| ||||||||||||||||||||| ||| ||||| |||||    
T  13312 taggcttaaatatgtaaaaggtccctgtaagttcacgcattttttgtttt 13263  T

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Target: scaffold1118 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold1118
Description:

Target: scaffold1118; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 224 - 260
Target Start/End: Original strand, 2423 - 2459
Alignment:
Q  224 gtaaaaggtccctgtaagttcgcgcgtttttggtttt 260  Q
    |||||||||||||||||||||||| ||||||||||||    
T  2423 gtaaaaggtccctgtaagttcgcgtgtttttggtttt 2459  T

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