View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2931_high_10 (Length: 253)
Name: NF2931_high_10
Description: NF2931
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2931_high_10 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 8 - 233
Target Start/End: Complemental strand, 38727535 - 38727310
Alignment:
| Q |
8 |
gagcagagatgaggaaaaataactgaacnnnnnnnngaaaatgaacaagcattatatacaagcaaagaagaaaaacgaacttttccattaaaaccaaagt |
107 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38727535 |
gagcagagatgaggaaaaataactgaacaaaaaaaagaaaatgaacaagcattatatacaagcaaagaagaaaaacgaacttttccattaaaaccaaagt |
38727436 |
T |
|
| Q |
108 |
tcagaggcaggtcatctgttgattgcagcatcatttgcatctgattaggtgccggtgtgcaagttgtagcacgcgttccatctgctggtcctgttcctcc |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38727435 |
tcagaggcaggtcatctgttgattgcagcatcatttgcatctgattaggtgccggtgtgcaagttgtagcacgcgttccatctgctggtcctgttcctcc |
38727336 |
T |
|
| Q |
208 |
tcccactagtgtagtgatccctatat |
233 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
38727335 |
tcccactagtgtagtgatccctatat |
38727310 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University