View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2931_low_11 (Length: 266)
Name: NF2931_low_11
Description: NF2931
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2931_low_11 |
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Alignment Details
Target: chr2 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 1 - 264
Target Start/End: Complemental strand, 10751734 - 10751471
Alignment:
| Q |
1 |
ttgtaaacaaacttcatagtcaattgcagactgaattagatatggatacttgctataaattccttcaacgccgagtttctttttctcgaaaggaagaaac |
100 |
Q |
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| T |
10751734 |
ttgtaaacaaacttcatagtcaattgcagactgaattagatatggatacttgctataaattccttcaacgccgagtttctttttctcgaaaggaagaaac |
10751635 |
T |
|
| Q |
101 |
ccttctccccagtcttccattatggaagaattgttaaggagtttatcggctactgcaagataaatggcaatcggtgnnnnnnncaaaccaattatactgt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| |
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| T |
10751634 |
ccttctccccagtcttccattatggaagaattgttaaggagtttatcggctactgcaagataaacggcaatcggtgtttttttcaaaccaattatactgt |
10751535 |
T |
|
| Q |
201 |
ttctaactctttccactatctctttcttgctactgcatatctgatttgtgttcaatctctgctc |
264 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10751534 |
ttctaactctttccactatctctttcttgctactgcatatctgatttgtgttcaatctctgctc |
10751471 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 5 - 164
Target Start/End: Complemental strand, 32561177 - 32561018
Alignment:
| Q |
5 |
aaacaaacttcatagtcaattgcagactgaattagatatggatacttgctataaattccttcaacgccgagtttctttttctcgaaaggaagaaaccctt |
104 |
Q |
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||||| |||||||| ||||||||||||||||||| ||| ||||| || ||| ||| ||||| || |||||||| ||||| ||||| |||||||||| |
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| T |
32561177 |
aaacagacttcataatcaattgcagactgaattaaataaggatattttgcatatattttatcaacaccaagtttcttcttctcaaaaggtagaaaccctt |
32561078 |
T |
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| Q |
105 |
ctccccagtcttccattatggaagaattgttaaggagtttatcggctactgcaagataaa |
164 |
Q |
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| T |
32561077 |
ccttccaaccttccaatattgaagaattttgaagtagtttatcagctactgcaagataaa |
32561018 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 206 - 265
Target Start/End: Complemental strand, 32560979 - 32560920
Alignment:
| Q |
206 |
actctttccactatctctttcttgctactgcatatctgatttgtgttcaatctctgctcc |
265 |
Q |
| |
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|||||||||| |||||| ||||||||||| ||||||||||||||||||||||| |||||| |
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| T |
32560979 |
actctttccattatctcattcttgctactacatatctgatttgtgttcaatctttgctcc |
32560920 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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