View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2931_low_12 (Length: 255)
Name: NF2931_low_12
Description: NF2931
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2931_low_12 |
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Alignment Details
Target: chr8 (Bit Score: 222; Significance: 1e-122; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 18 - 247
Target Start/End: Complemental strand, 34320722 - 34320493
Alignment:
| Q |
18 |
gaggtgaatgcatagaactagaagttgctattgccttaagggacttgatcattgagggttgaaacacaaaccttttacacaccacattgttttttctcgt |
117 |
Q |
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| T |
34320722 |
gaggtgaatgcatagaactagaagttgccattgccttaagggacttgatcattgagggttgaaacacaaaccttttacacaccacattgttttttctcgt |
34320623 |
T |
|
| Q |
118 |
taacacaagttctgggaaaatagttaaatccctttgtggaaaaaccgaagctcctccatcaagtaaaggaaaaggtaatactaataaccctttatcttct |
217 |
Q |
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| T |
34320622 |
taacacaagttctgggaaaatagttaaatccctttgtggaaaaacagaagctcctccatcaagtaaaggaaaaggtaatactaataaccctttatcttct |
34320523 |
T |
|
| Q |
218 |
tcttcttcttgtaatttttggttgatgatg |
247 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
34320522 |
tcttcttcttgtaatttttggttgatgatg |
34320493 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 23 - 227
Target Start/End: Complemental strand, 34329628 - 34329424
Alignment:
| Q |
23 |
gaatgcatagaactagaagttgctattgccttaagggacttgatcattgagggttgaaacacaaaccttttacacaccacattgttttttctcgttaaca |
122 |
Q |
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| T |
34329628 |
gaatgcaccgaactagaagttgccattttcttaagggacttgatcattgagggttgaaacacaaatcttttacacaccacattgttttctctcttaagaa |
34329529 |
T |
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| Q |
123 |
caagttctgggaaaatagttaaatccctttgtggaaaaaccgaagctcctccatcaagtaaaggaaaaggtaatactaataaccctttatcttcttcttc |
222 |
Q |
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| T |
34329528 |
caagttcttgaaaaataggtaaatctctttgtggaaacattgaagctcctccatcaaggaaatgaaagggtaattctaataaccctttttctccttcttt |
34329429 |
T |
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| Q |
223 |
ttctt |
227 |
Q |
| |
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||||| |
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| T |
34329428 |
ttctt |
34329424 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 71; Significance: 3e-32; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 27 - 161
Target Start/End: Original strand, 36622118 - 36622252
Alignment:
| Q |
27 |
gcatagaactagaagttgctattgccttaagggacttgatcattgagggttgaaacacaaaccttttacacaccacattgttttttctcgttaacacaag |
126 |
Q |
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|||| |||||||||||| | ||||||||||| ||||||||||| | |||||||| |||||||||||| || | |||||||||| |||| |||||||| |
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| T |
36622118 |
gcatggaactagaagttaccattgccttaagagacttgatcatcgcaggttgaaaaacaaaccttttaaactcaacattgttttctctctttaacacatt |
36622217 |
T |
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| Q |
127 |
ttctgggaaaatagttaaatccctttgtggaaaaa |
161 |
Q |
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| T |
36622218 |
ttctgggaaaataggtaaatccctttgtggaaaaa |
36622252 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 23 - 210
Target Start/End: Original strand, 36627339 - 36627526
Alignment:
| Q |
23 |
gaatgcatagaactagaagttgctattgccttaagggacttgatcattgagggttgaaacacaaaccttttacacaccacattgttttttctcgttaaca |
122 |
Q |
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|||||||| ||||||||||| | ||||||||||| ||||| ||||||| |||||||| |||||||||||| | || |||||||||| | || ||| || |
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| T |
36627339 |
gaatgcatggaactagaagtcaccattgccttaagagacttaatcattgcaggttgaaaaacaaaccttttaaatacgacattgttttctttctttatca |
36627438 |
T |
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| Q |
123 |
caagttctgggaaaatagttaaatccctttgtggaaaaaccgaagctcctccatcaagtaaaggaaaaggtaatactaataacccttt |
210 |
Q |
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| | ||||||||| |||| ||||||||||||||||||| | || ||| ||||||||||| || ||| ||||||||||| |||| |
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| T |
36627439 |
ccatttctgggaagataggcaaatccctttgtggaaaaattgttgcccctgcatcaagtaaactcaagggtgatactaataactcttt |
36627526 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 23 - 210
Target Start/End: Original strand, 36632911 - 36633098
Alignment:
| Q |
23 |
gaatgcatagaactagaagttgctattgccttaagggacttgatcattgagggttgaaacacaaaccttttacacaccacattgttttttctcgttaaca |
122 |
Q |
| |
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|||||||| ||||||||||| | ||||||||||| || |||||||||| |||||||| | |||||||||| | || |||||||||| |||| || | |
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| T |
36632911 |
gaatgcatgaaactagaagttaccattgccttaagagatttgatcattgcaggttgaaaaaaaaaccttttaaatacgacattgttttctctctttcccg |
36633010 |
T |
|
| Q |
123 |
caagttctgggaaaatagttaaatccctttgtggaaaaaccgaagctcctccatcaagtaaaggaaaaggtaatactaataacccttt |
210 |
Q |
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||| |||||||||| || ||||||||||||||||||| |||||| ||||||||||| || ||| ||||||||||| |||| |
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| T |
36633011 |
caatctctgggaaaacaggcaaatccctttgtggaaaaattattgctcctgcatcaagtaaacttaagggtgatactaataactcttt |
36633098 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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