View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2931_low_14 (Length: 253)

Name: NF2931_low_14
Description: NF2931
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2931_low_14
NF2931_low_14
[»] chr3 (2 HSPs)
chr3 (10-236)||(25915394-25915620)
chr3 (10-236)||(25901376-25901602)
[»] chr4 (12 HSPs)
chr4 (25-227)||(10571388-10571590)
chr4 (22-227)||(10553655-10553860)
chr4 (17-142)||(10460466-10460591)
chr4 (63-128)||(10482036-10482101)
chr4 (71-143)||(6392661-6392732)
chr4 (62-138)||(10493520-10493596)
chr4 (63-128)||(10467898-10467963)
chr4 (62-133)||(829721-829792)
chr4 (17-140)||(8447758-8447881)
chr4 (61-143)||(10464106-10464188)
chr4 (97-142)||(1110987-1111032)
chr4 (61-141)||(6388082-6388162)
[»] chr1 (2 HSPs)
chr1 (63-118)||(50645635-50645690)
chr1 (50-143)||(4366632-4366725)
[»] chr7 (1 HSPs)
chr7 (51-138)||(26256620-26256707)
[»] chr6 (1 HSPs)
chr6 (73-138)||(19746854-19746919)
[»] chr2 (1 HSPs)
chr2 (179-227)||(25376860-25376908)


Alignment Details
Target: chr3 (Bit Score: 207; Significance: 1e-113; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 10 - 236
Target Start/End: Original strand, 25915394 - 25915620
Alignment:
Q  10 caaagggagtccatcaaaaccacaattgttggatgaacacgtggcacttcgtcaaaaccccgaggcagcaacaactgagtgtatgactcagtggacagat 109  Q
    |||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25915394 caaagggagtccatcaaaaccacaattgttggctgaacacgtggcacctcgtcaaaaccccgaggcagcaacaactgagtgtatgactcagtggacagat 25915493  T
Q  110 caagtgaaacgatcacatattgctcaacagtaatcttactaacattatcaaattcatagtcagaatagaagtaattgcgaagtgccaaccagttaatagt 209  Q
    |||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25915494 caagcgaaacaatcacatattgctcaacagtaatcttactaacattatcaaattcatagtcagaatagaagtaattgcgaagtgccaaccagttaatagt 25915593  T
Q  210 gccactcaagtaaacaccttggctctt 236  Q
     ||||||||||||||||||||||||||    
T  25915594 accactcaagtaaacaccttggctctt 25915620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 10 - 236
Target Start/End: Original strand, 25901376 - 25901602
Alignment:
Q  10 caaagggagtccatcaaaaccacaattgttggatgaacacgtggcacttcgtcaaaaccccgaggcagcaacaactgagtgtatgactcagtggacagat 109  Q
    |||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  25901376 caaagggagtccatcaaaaccacaattgttggctgaacacgtggcacctcgtcaaaaccccgaggtagcaacaactgagtgtatgactcagtggacagat 25901475  T
Q  110 caagtgaaacgatcacatattgctcaacagtaatcttactaacattatcaaattcatagtcagaatagaagtaattgcgaagtgccaaccagttaatagt 209  Q
    |||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||| ||||||||||||||||||||||    
T  25901476 caagcgaaacaatcacatattgctcaacagtaatcttactaacattatcaaattcataatctgaatagaagtaattgtgaagtgccaaccagttaatagt 25901575  T
Q  210 gccactcaagtaaacaccttggctctt 236  Q
     ||||||||||||||||||||| ||||    
T  25901576 accactcaagtaaacaccttggttctt 25901602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 99; Significance: 6e-49; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 25 - 227
Target Start/End: Original strand, 10571388 - 10571590
Alignment:
Q  25 aaaaccacaattgttggatgaacacgtggcacttcgtcaaaaccccgaggcagcaacaactgagtgtatgactcagtggacagatcaagtgaaacgatca 124  Q
    ||||||||||  ||||| |||||||  | ||| ||||||||||||||||| |||||||| | ||||||||||||||| || |||||||||||||| ||||    
T  10571388 aaaaccacaagcgttggttgaacacaagacacctcgtcaaaaccccgaggaagcaacaattcagtgtatgactcagttgagagatcaagtgaaacaatca 10571487  T
Q  125 catattgctcaacagtaatcttactaacattatcaaattcatagtcagaatagaagtaattgcgaagtgccaaccagttaatagtgccactcaagtaaac 224  Q
    |||||||||||||||||||  ||||||||||| ||| |||||| |||||||||||||||| |||||| | || ||||||||| || |||||||| || ||    
T  10571488 catattgctcaacagtaatactactaacattaccaatttcataatcagaatagaagtaatcgcgaagggtcatccagttaattgtaccactcaaatacac 10571587  T
Q  225 acc 227  Q
    |||    
T  10571588 acc 10571590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 22 - 227
Target Start/End: Original strand, 10553655 - 10553860
Alignment:
Q  22 atcaaaaccacaattgttggatgaacacgtggcacttcgtcaaaaccccgaggcagcaacaactgagtgtatgactcagtggacagatcaagtgaaacga 121  Q
    |||||| ||||||  ||||| |||||||| | ||| | |||||||||||| || |||||||| | ||||||||||||||| || |||||||||||||| |    
T  10553655 atcaaacccacaagcgttggctgaacacgagacaccttgtcaaaaccccggggaagcaacaattcagtgtatgactcagttgagagatcaagtgaaacaa 10553754  T
Q  122 tcacatattgctcaacagtaatcttactaacattatcaaattcatagtcagaatagaagtaattgcgaagtgccaaccagttaatagtgccactcaagta 221  Q
    || |||||||| ||||| |||| || ||||||||| ||| |||||| |||||||||||||||| |||||| | |||||||||||| || ||| |||| ||    
T  10553755 tcccatattgcgcaacactaatattgctaacattaccaatttcataatcagaatagaagtaatcgcgaagggtcaaccagttaattgtaccattcaaata 10553854  T
Q  222 aacacc 227  Q
     |||||    
T  10553855 cacacc 10553860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 17 - 142
Target Start/End: Complemental strand, 10460591 - 10460466
Alignment:
Q  17 agtccatcaaaaccacaattgttggatgaacacgtggcacttcgtcaaaaccccgaggcagcaacaactgagtgtatgactcagtggacagatcaagtga 116  Q
    |||||||||||||||||| |||||| |||  ||||||||| || || ||||||||||||| ||||| ||||||||||| ||||| ||| ||||| | |||    
T  10460591 agtccatcaaaaccacaagtgttggctgataacgtggcacctcatcgaaaccccgaggcaacaacagctgagtgtatgtctcagaggagagatccaatga 10460492  T
Q  117 aacgatcacatattgctcaacagtaa 142  Q
    ||| |||||||||| |||||||||||    
T  10460491 aacaatcacatatttctcaacagtaa 10460466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 63 - 128
Target Start/End: Complemental strand, 10482101 - 10482036
Alignment:
Q  63 aaaaccccgaggcagcaacaactgagtgtatgactcagtggacagatcaagtgaaacgatcacata 128  Q
    |||||||||||| |||||||| |||||||||| |||||| || |||||||||||||  ||||||||    
T  10482101 aaaaccccgaggtagcaacaattgagtgtatgtctcagttgagagatcaagtgaaagaatcacata 10482036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 71 - 143
Target Start/End: Complemental strand, 6392732 - 6392661
Alignment:
Q  71 gaggcagcaacaactgagtgtatgactcagtggacagatcaagtgaaacgatcacatattgctcaacagtaat 143  Q
    ||||||||||||| | |||||||| ||||||||| ||| | |||||||  |||||||||||||||||||||||    
T  6392732 gaggcagcaacaatttagtgtatgtctcagtggagaga-cgagtgaaagaatcacatattgctcaacagtaat 6392661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 62 - 138
Target Start/End: Complemental strand, 10493596 - 10493520
Alignment:
Q  62 caaaaccccgaggcagcaacaactgagtgtatgactcagtggacagatcaagtgaaacgatcacatattgctcaaca 138  Q
    |||||||| |||||| |||||  |||||||||| ||||||||| ||||| | |||||  ||||||||||||||||||    
T  10493596 caaaaccctgaggcaacaacagttgagtgtatgtctcagtggaaagatcgactgaaagaatcacatattgctcaaca 10493520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 63 - 128
Target Start/End: Complemental strand, 10467963 - 10467898
Alignment:
Q  63 aaaaccccgaggcagcaacaactgagtgtatgactcagtggacagatcaagtgaaacgatcacata 128  Q
    |||||| ||||| |||||||| |||||||||| |||||| || |||||||||||||  ||||||||    
T  10467963 aaaacctcgaggtagcaacaattgagtgtatgtctcagttgagagatcaagtgaaagaatcacata 10467898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 62 - 133
Target Start/End: Original strand, 829721 - 829792
Alignment:
Q  62 caaaaccccgaggcagcaacaactgagtgtatgactcagtggacagatcaagtgaaacgatcacatattgct 133  Q
    ||||| || |||||||| |||| | |||||||| ||||||||| |||||||||||||  ||| |||||||||    
T  829721 caaaaacctgaggcagccacaatttagtgtatgtctcagtggaaagatcaagtgaaagaatcgcatattgct 829792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 17 - 140
Target Start/End: Original strand, 8447758 - 8447881
Alignment:
Q  17 agtccatcaaaaccacaattgttggatgaacacgtggcacttcgtcaaaaccccgaggcagcaacaactgagtgtatgactcagtggacagatcaagtga 116  Q
    |||||||||||||  ||| ||| ||||||   | |||||| || ||||||||| |||||| ||||| |||||||| |||||| ||||| | | |||| ||    
T  8447758 agtccatcaaaactgcaagtgtcggatgatgtcatggcacctcatcaaaaccctgaggcaacaacagctgagtgtgtgactcggtggagatagcaagcga 8447857  T
Q  117 aacgatcacatattgctcaacagt 140  Q
    ||| |||| |||||  ||||||||    
T  8447858 aacaatcatatattcatcaacagt 8447881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 61 - 143
Target Start/End: Complemental strand, 10464188 - 10464106
Alignment:
Q  61 tcaaaaccccgaggcagcaacaactgagtgtatgactcagtggacagatcaagtgaaacgatcacatattgctcaacagtaat 143  Q
    ||||||||||||||||||||||  |||||||| | ||||||||| ||||  | |||||  |||||||||| ||| | ||||||    
T  10464188 tcaaaaccccgaggcagcaacagttgagtgtacgtctcagtggaaagattgattgaaagaatcacatatttctccatagtaat 10464106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 97 - 142
Target Start/End: Original strand, 1110987 - 1111032
Alignment:
Q  97 tcagtggacagatcaagtgaaacgatcacatattgctcaacagtaa 142  Q
    |||||||| |||||||||||||| ||||||| ||||||||| ||||    
T  1110987 tcagtggaaagatcaagtgaaacaatcacatgttgctcaacggtaa 1111032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 61 - 141
Target Start/End: Complemental strand, 6388162 - 6388082
Alignment:
Q  61 tcaaaaccccgaggcagcaacaactgagtgtatgactcagtggacagatcaagtgaaacgatcacatattgctcaacagta 141  Q
    |||||| ||||||| ||||| || |||||||||  |||| | || |||||||||||||  |||||| |||||| |||||||    
T  6388162 tcaaaatcccgaggaagcaaaaattgagtgtatttctcacttgatagatcaagtgaaagaatcacacattgcttaacagta 6388082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 63 - 118
Target Start/End: Original strand, 50645635 - 50645690
Alignment:
Q  63 aaaaccccgaggcagcaacaactgagtgtatgactcagtggacagatcaagtgaaa 118  Q
    ||||||||||||||||||||  |||||||||| ||| ||||| |||||||||||||    
T  50645635 aaaaccccgaggcagcaacagttgagtgtatgtctcggtggagagatcaagtgaaa 50645690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 50 - 143
Target Start/End: Original strand, 4366632 - 4366725
Alignment:
Q  50 gtggcacttcgtcaaaaccccgaggcagcaacaactgagtgtatgactcagtggacagatcaagtgaaacgatcacatattgctcaacagtaat 143  Q
    |||||||||| |||||||| |||||||||||  | ||| |||||| ||| ||   ||||||||| ||||| || ||| |||||||||| |||||    
T  4366632 gtggcacttcttcaaaaccacgaggcagcaagtattgattgtatgtctctgtacccagatcaagcgaaacaataacaaattgctcaacggtaat 4366725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 51 - 138
Target Start/End: Complemental strand, 26256707 - 26256620
Alignment:
Q  51 tggcacttcgtcaaaaccccgaggcagcaacaactgagtgtatgactcagtggacagatcaagtgaaacgatcacatattgctcaaca 138  Q
    |||||| || ||||||||  ||||||||||||||||  |||||| ||| || || |||||||| ||||  |||||| |||||||||||    
T  26256707 tggcacctcatcaaaaccttgaggcagcaacaactgcttgtatgtctccgttgaaagatcaagcgaaataatcacaaattgctcaaca 26256620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 73 - 138
Target Start/End: Original strand, 19746854 - 19746919
Alignment:
Q  73 ggcagcaacaactgagtgtatgactcagtggacagatcaagtgaaacgatcacatattgctcaaca 138  Q
    |||||||| || || ||||||| |||||| || |||||||| ||||| |||||| |||||||||||    
T  19746854 ggcagcaaaaattgtgtgtatgtctcagtcgaaagatcaagggaaacaatcacaaattgctcaaca 19746919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 179 - 227
Target Start/End: Complemental strand, 25376908 - 25376860
Alignment:
Q  179 agtaattgcgaagtgccaaccagttaatagtgccactcaagtaaacacc 227  Q
    ||||||||||||| ||||||||| ||||||| |||||||| || |||||    
T  25376908 agtaattgcgaagggccaaccaggtaatagtaccactcaaatacacacc 25376860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University