View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2931_low_16 (Length: 239)

Name: NF2931_low_16
Description: NF2931
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2931_low_16
NF2931_low_16
[»] chr4 (13 HSPs)
chr4 (19-222)||(27556815-27557018)
chr4 (113-192)||(27559689-27559768)
chr4 (21-73)||(27503447-27503499)
chr4 (29-75)||(27468901-27468947)
chr4 (29-75)||(27514423-27514469)
chr4 (31-72)||(27489643-27489684)
chr4 (29-75)||(27524054-27524100)
chr4 (29-73)||(27476133-27476177)
chr4 (21-75)||(27486462-27486516)
chr4 (33-75)||(27506280-27506322)
chr4 (31-75)||(27508440-27508484)
chr4 (21-68)||(27497858-27497905)
chr4 (33-75)||(27479402-27479444)


Alignment Details
Target: chr4 (Bit Score: 204; Significance: 1e-111; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 19 - 222
Target Start/End: Complemental strand, 27557018 - 27556815
Alignment:
Q  19 aaatcaacactatcataatgaagaaaacatgtctaaagcatgtttacaaaattatgaggttgcacttgaaagggtggtctacaattttaagaattggttg 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27557018 aaatcaacactatcataatgaagaaaacatgtctaaagcatgtttacaaaattatgaggttgcacttgaaagggtggtctacaattttaagaattggttg 27556919  T
Q  119 taaagtctatttctaaaggggaatctaagttggcatgagttttgaagtgtgaagtaatccttgatataattaaacaataccaagtgacatctcattggcc 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27556918 taaagtctatttctaaaggggaatctaagttggcatgagttttgaagtgtgaagtaatccttgatataattaaacaataccaagtgacatctcattggcc 27556819  T
Q  219 tttg 222  Q
    ||||    
T  27556818 tttg 27556815  T

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Target: chr4; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 113 - 192
Target Start/End: Complemental strand, 27559768 - 27559689
Alignment:
Q  113 tggttgtaaagtctatttctaaaggggaatctaagttggcatgagttttgaagtgtgaagtaatccttgatataattaaa 192  Q
    |||||||||||||| |||||||||||||| || |||||||||||||||| |||| |||||||| |||| |||||||||||    
T  27559768 tggttgtaaagtctctttctaaaggggaaactgagttggcatgagtttttaagtctgaagtaaccctttatataattaaa 27559689  T

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Target: chr4; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 21 - 73
Target Start/End: Original strand, 27503447 - 27503499
Alignment:
Q  21 atcaacactatcataatgaagaaaacatgtctaaagcatgtttacaaaattat 73  Q
    ||||||| |||||||||||||||||||||||| ||||||||||||||||||||    
T  27503447 atcaacattatcataatgaagaaaacatgtctgaagcatgtttacaaaattat 27503499  T

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Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 29 - 75
Target Start/End: Complemental strand, 27468947 - 27468901
Alignment:
Q  29 tatcataatgaagaaaacatgtctaaagcatgtttacaaaattatga 75  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||    
T  27468947 tatcataatgaagaaaacatgtctgaagcatgtttacaaaattatga 27468901  T

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Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 29 - 75
Target Start/End: Original strand, 27514423 - 27514469
Alignment:
Q  29 tatcataatgaagaaaacatgtctaaagcatgtttacaaaattatga 75  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||    
T  27514423 tatcataatgcagaaaacatgtctaaagcatgtttacaaaattatga 27514469  T

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Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 31 - 72
Target Start/End: Original strand, 27489643 - 27489684
Alignment:
Q  31 tcataatgaagaaaacatgtctaaagcatgtttacaaaatta 72  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  27489643 tcataatgaagaaaacatgtctaaagcatgtttacaaaatta 27489684  T

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Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 29 - 75
Target Start/End: Original strand, 27524054 - 27524100
Alignment:
Q  29 tatcataatgaagaaaacatgtctaaagcatgtttacaaaattatga 75  Q
    |||||||||||||||||||||||| |||||||||||| |||||||||    
T  27524054 tatcataatgaagaaaacatgtctgaagcatgtttacgaaattatga 27524100  T

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Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 29 - 73
Target Start/End: Complemental strand, 27476177 - 27476133
Alignment:
Q  29 tatcataatgaagaaaacatgtctaaagcatgtttacaaaattat 73  Q
    |||||||||||||||||||||||| ||||||| ||||||||||||    
T  27476177 tatcataatgaagaaaacatgtctgaagcatgcttacaaaattat 27476133  T

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Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 21 - 75
Target Start/End: Complemental strand, 27486516 - 27486462
Alignment:
Q  21 atcaacactatcataatgaagaaaacatgtctaaagcatgtttacaaaattatga 75  Q
    ||||||||| | |||||||||||||||||||| || |||||||||| ||||||||    
T  27486516 atcaacactttaataatgaagaaaacatgtctgaaacatgtttacacaattatga 27486462  T

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Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 33 - 75
Target Start/End: Original strand, 27506280 - 27506322
Alignment:
Q  33 ataatgaagaaaacatgtctaaagcatgtttacaaaattatga 75  Q
    |||||||||||||||||||| || |||||||||||||||||||    
T  27506280 ataatgaagaaaacatgtctgaaacatgtttacaaaattatga 27506322  T

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Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 31 - 75
Target Start/End: Original strand, 27508440 - 27508484
Alignment:
Q  31 tcataatgaagaaaacatgtctaaagcatgtttacaaaattatga 75  Q
    ||||||||||||||||||||||  |||||||||| ||||||||||    
T  27508440 tcataatgaagaaaacatgtcttcagcatgtttataaaattatga 27508484  T

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Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 21 - 68
Target Start/End: Complemental strand, 27497905 - 27497858
Alignment:
Q  21 atcaacactatcataatgaagaaaacatgtctaaagcatgtttacaaa 68  Q
    ||||||| |||||||||||||||||||||||  |||| ||||||||||    
T  27497905 atcaacattatcataatgaagaaaacatgtcctaagcctgtttacaaa 27497858  T

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Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 33 - 75
Target Start/End: Complemental strand, 27479444 - 27479402
Alignment:
Q  33 ataatgaagaaaacatgtctaaagcatgtttacaaaattatga 75  Q
    |||||||||||||||||||| || |||||||||| ||||||||    
T  27479444 ataatgaagaaaacatgtctgaaacatgtttacacaattatga 27479402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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