View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2931_low_22 (Length: 222)

Name: NF2931_low_22
Description: NF2931
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2931_low_22
NF2931_low_22
[»] chr4 (4 HSPs)
chr4 (17-203)||(41942943-41943128)
chr4 (34-203)||(10336009-10336177)
chr4 (17-87)||(3295339-3295409)
chr4 (18-73)||(31519152-31519207)
[»] chr8 (6 HSPs)
chr8 (17-202)||(9818104-9818288)
chr8 (17-208)||(42077392-42077582)
chr8 (17-203)||(21231762-21231959)
chr8 (17-90)||(9881132-9881205)
chr8 (18-65)||(29115604-29115651)
chr8 (161-203)||(9881263-9881305)
[»] chr7 (9 HSPs)
chr7 (17-185)||(10530084-10530251)
chr7 (17-203)||(9745168-9745365)
chr7 (17-156)||(29587619-29587758)
chr7 (17-203)||(8311775-8311974)
chr7 (130-203)||(13168013-13168086)
chr7 (17-89)||(13167928-13168000)
chr7 (94-203)||(10529444-10529565)
chr7 (21-76)||(46002795-46002850)
chr7 (18-70)||(31211136-31211188)
[»] chr1 (4 HSPs)
chr1 (17-185)||(31654518-31654685)
chr1 (17-156)||(51443498-51443636)
chr1 (18-203)||(13380135-13380330)
chr1 (67-203)||(8311100-8311247)
[»] scaffold0016 (1 HSPs)
scaffold0016 (17-202)||(107900-108084)
[»] chr2 (6 HSPs)
chr2 (17-202)||(29046489-29046671)
chr2 (17-203)||(27977064-27977261)
chr2 (17-203)||(28063592-28063789)
chr2 (18-203)||(16130995-16131190)
chr2 (52-203)||(22403839-22404001)
chr2 (18-90)||(28497230-28497301)
[»] scaffold0022 (1 HSPs)
scaffold0022 (17-203)||(2067-2264)
[»] scaffold0028 (1 HSPs)
scaffold0028 (87-203)||(148322-148438)
[»] chr3 (7 HSPs)
chr3 (17-203)||(15990083-15990280)
chr3 (17-156)||(40888663-40888800)
chr3 (17-203)||(29453692-29453889)
chr3 (17-73)||(52641386-52641442)
chr3 (18-74)||(19544714-19544769)
chr3 (107-156)||(19544616-19544665)
chr3 (21-61)||(11650592-11650632)
[»] scaffold0259 (1 HSPs)
scaffold0259 (18-86)||(2544-2612)


Alignment Details
Target: chr4 (Bit Score: 167; Significance: 1e-89; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 17 - 203
Target Start/End: Complemental strand, 41943128 - 41942943
Alignment:
Q  17 attatgatgttgaatttgatatgcttcttgatttaatggatgagtgaaaagatttattgtgttttattattttttcatgtagttgctaattataagaatt 116  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||    
T  41943128 attatgttgttgaatttgatatgcttcttgatttaatggatgagtgaaaagatttattgtgttttattattttt-cttgtagttgctaattataagaatt 41943030  T
Q  117 ggtgagttacaattttgttagagcatgtgatttgatgaatatgatttcttatttgtgaaatgagaaatgttgttgaattaaagtgat 203  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41943029 ggtgagttgcaattttgttagagcatgtgatttgatgaatatgatttcttatttgtgaaatgagaaatgttgttgaattaaagtgat 41942943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 34 - 203
Target Start/End: Complemental strand, 10336177 - 10336009
Alignment:
Q  34 gatatgcttcttgatttaatggatgagtgaaaagatttattgtgttttattattttttcatgtagttgctaattataagaattggtgagttacaattttg 133  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| | ||||||||| ||||||||||||||||||||| ||||||||    
T  10336177 gatatgcttcttgatttaatggatgagtgaaaagatttagtgtgttttattattttt-cttgtagttgcaaattataagaattggtgagttgcaattttg 10336079  T
Q  134 ttagagcatgtgatttgatgaatatgatttcttatttgtgaaatgagaaatgttgttgaattaaagtgat 203  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||    
T  10336078 ttagagcatgtgatttgatgaatatgatttcttatttatgaaatgagaaatgttattgaattaaagtgat 10336009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 17 - 87
Target Start/End: Original strand, 3295339 - 3295409
Alignment:
Q  17 attatgatgttgaatttgatatgcttcttgatttaatggatgagtgaaaagatttattgtgttttattatt 87  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  3295339 attatgatgttgaatttgatatgcttcttgatttaatggatgagagaaaagatttattgtgttttattatt 3295409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 18 - 73
Target Start/End: Complemental strand, 31519207 - 31519152
Alignment:
Q  18 ttatgatgttgaatttgatatgcttcttgatttaatggatgagtgaaaagatttat 73  Q
    |||||| ||||||||||||||||||||||| | ||| |||||||||||||||||||    
T  31519207 ttatgacgttgaatttgatatgcttcttgactcaatagatgagtgaaaagatttat 31519152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 158; Significance: 3e-84; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 17 - 202
Target Start/End: Complemental strand, 9818288 - 9818104
Alignment:
Q  17 attatgatgttgaatttgatatgcttcttgatttaatggatgagtgaaaagatttattgtgttttattattttttcatgtagttgctaattataagaatt 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| | |||||||||||||||||||||||    
T  9818288 attatgatgttgaatttgatatgcttcttgatttaatggatgagtgaaaagatttatcgtgttttattattttt-cttgtagttgctaattataagaatt 9818190  T
Q  117 ggtgagttacaattttgttagagcatgtgatttgatgaatatgatttcttatttgtgaaatgagaaatgttgttgaattaaagtga 202  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||    
T  9818189 ggtgagttgcaattttgttagagcatgtgatttgatgaatatgatttcttatttgtgaaatgagaaatgttgtggagttaaagtga 9818104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 17 - 208
Target Start/End: Complemental strand, 42077582 - 42077392
Alignment:
Q  17 attatgatgttgaatttgatatgcttcttgatttaatggatgagtgaaaagatttattgtgttttattattttttcatgtagttgctaattataagaatt 116  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||| ||||||||||||||    
T  42077582 attatgatgttgaatttgatacgcttcttgatttaatggatgagtgaaaagatttattgtgttttattattttt-cttgtagttgttaattataagaatt 42077484  T
Q  117 ggtgagttacaattttgttagagcatgtgatttgatgaatatgatttcttatttgtgaaatgagaaatgttgttgaattaaagtgatctgtg 208  Q
    |||||||| ||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||| |||||||||||| ||||    
T  42077483 ggtgagttgcaattttgttagagcatgtgatttgatgaatataattttttatttgtgaaatgagaaatgttgttaaattaaagtgatttgtg 42077392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 17 - 203
Target Start/End: Complemental strand, 21231959 - 21231762
Alignment:
Q  17 attatgatgttgaatttgatatgcttcttgatttaatggatgagtgaaaagatttattgtgttttattattttttcatgtagttgctaattataagaatt 116  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||  ||||| |||||||| |||||||| |||||    
T  21231959 attatgatgttgaatttgatatgcttcttgatttaatggatgagtgaaaagatttattatgttttatta-attttcttgtagttgataattatatgaatt 21231861  T
Q  117 ggtgagttacaattttgttagagcatgtgatttgatgaat------------atgatttcttatttgtgaaatgagaaatgttgttgaattaaagtgat 203  Q
    |||||||| ||||||||||| || ||||||||| |||| |            ||| ||||||||||||| |||||||||||||||||| ||||||||||    
T  21231860 ggtgagttccaattttgttaaagtatgtgattttatgattgtgtaaatcttgatgttttcttatttgtgcaatgagaaatgttgttgagttaaagtgat 21231762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 17 - 90
Target Start/End: Original strand, 9881132 - 9881205
Alignment:
Q  17 attatgatgttgaatttgatatgcttcttgatttaatggatgagtgaaaagatttattgtgttttattattttt 90  Q
    |||||||| || |||||||||||||| | |||| |||||||||||||||||||||| | |||||||||| ||||    
T  9881132 attatgatcttaaatttgatatgcttatcgattcaatggatgagtgaaaagatttactatgttttattaatttt 9881205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 18 - 65
Target Start/End: Complemental strand, 29115651 - 29115604
Alignment:
Q  18 ttatgatgttgaatttgatatgcttcttgatttaatggatgagtgaaa 65  Q
    ||||||| |||||||||||||||||| |||||  ||||||||||||||    
T  29115651 ttatgatattgaatttgatatgcttcatgattcgatggatgagtgaaa 29115604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 161 - 203
Target Start/End: Original strand, 9881263 - 9881305
Alignment:
Q  161 tttcttatttgtgaaatgagaaatgttgttgaattaaagtgat 203  Q
    ||||||||||||| | |||||||||||||||| ||||||||||    
T  9881263 tttcttatttgtgcagtgagaaatgttgttgagttaaagtgat 9881305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 149; Significance: 7e-79; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 149; E-Value: 7e-79
Query Start/End: Original strand, 17 - 185
Target Start/End: Complemental strand, 10530251 - 10530084
Alignment:
Q  17 attatgatgttgaatttgatatgcttcttgatttaatggatgagtgaaaagatttattgtgttttattattttttcatgtagttgctaattataagaatt 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| | |||||||||||||||||||||||    
T  10530251 attatgatgttgaatttgatatgcttcttgatttaatggatgagtgaaaagatttatcgtgttttattattttt-cttgtagttgctaattataagaatt 10530153  T
Q  117 ggtgagttacaattttgttagagcatgtgatttgatgaatatgatttcttatttgtgaaatgagaaatg 185  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10530152 ggtgagttgcaattttgttagagcatgtgatttgatgaatatgatttcttatttgtgaaatgagaaatg 10530084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 17 - 203
Target Start/End: Original strand, 9745168 - 9745365
Alignment:
Q  17 attatgatgttgaatttgatatgcttcttgatttaatggatgagtgaaaagatttattgtgttttattattttttcatgtagttgctaattataagaatt 116  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||| |||||| |||||||| |||||||| |||||    
T  9745168 attatgatgttgaatttgatatgcttcttgattcaatggatgagtgaaaatatttattgtgttttatta-tttttcttgtagttgataattatatgaatt 9745266  T
Q  117 ggtgagttacaattttgttagagcatgtgatttgatgaat------------atgatttcttatttgtgaaatgagaaatgttgttgaattaaagtgat 203  Q
    |||||||| ||||||||||| || ||||||||||||||||            ||| ||||||||||||| |||||||||||||||||| ||||||||||    
T  9745267 ggtgagttgcaattttgttaaagtatgtgatttgatgaatgtgtaaatcttgatgttttcttatttgtgcaatgagaaatgttgttgagttaaagtgat 9745365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 17 - 156
Target Start/End: Original strand, 29587619 - 29587758
Alignment:
Q  17 attatgatgttgaatttgatatgcttcttgatttaatggatgagtg-aaaagatttattgtgttttattattttttcatgtagttgctaattataagaat 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||  ||||| |||||||| |||||||| ||||    
T  29587619 attatgatgttgaatttgatatgcttcttgatttaatggatgagtgaaaaagatttattatgttttatta-attttcttgtagttgataattatatgaat 29587717  T
Q  116 tggtgagttacaattttgttagagcatgtgatttgatgaat 156  Q
    ||||||||| ||||||||||| || ||||||||||||||||    
T  29587718 tggtgagttgcaattttgttaaagtatgtgatttgatgaat 29587758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 17 - 203
Target Start/End: Original strand, 8311775 - 8311974
Alignment:
Q  17 attatgatgttgaatttgatatgcttcttgatttaatggatgagtgaaaagatttattgtg-ttttattattttttcatgtagttgctaattataagaat 115  Q
    ||||||||||||||||||| |||||||||||||  ||||||| ||||||||||||||| || |||||||| ||||   |||||||| |||||||||||||    
T  8311775 attatgatgttgaatttgacatgcttcttgattcgatggatgggtgaaaagatttattatgtttttattacttttctttgtagttgataattataagaat 8311874  T
Q  116 tggtgagttacaattttgttagagcatgtgatttgatgaat------------atgatttcttatttgtgaaatgagaaatgttgttgaattaaagtgat 203  Q
    |||||| || ||||||||||| || ||||||||||||||||            ||||||||||| ||||||||||||||||||||| |||||||||||||    
T  8311875 tggtgatttgcaattttgttaaagtatgtgatttgatgaatgttgaaatattgatgatttcttaattgtgaaatgagaaatgttgtggaattaaagtgat 8311974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 130 - 203
Target Start/End: Original strand, 13168013 - 13168086
Alignment:
Q  130 tttgttagagcatgtgatttgatgaatatgatttcttatttgtgaaatgagaaatgttgttgaattaaagtgat 203  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13168013 tttgttagagtatgtgatttgatgaatatgatttcttatttgtgaaatgagaaatgttgttgaattaaagtgat 13168086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 17 - 89
Target Start/End: Original strand, 13167928 - 13168000
Alignment:
Q  17 attatgatgttgaatttgatatgcttcttgatttaatggatgagtgaaaagatttattgtgttttattatttt 89  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  13167928 attatgatgttgaatttgatatgcttcttgatttaatggatgagggaaaagatttattgtgttttattatttt 13168000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 94 - 203
Target Start/End: Complemental strand, 10529565 - 10529444
Alignment:
Q  94 tgtagttgctaattataagaattggtgagttacaattttgttagagcatgtgatttgatgaat------------atgatttcttatttgtgaaatgaga 181  Q
    |||||||| |||||||| ||||||||||||| ||||||||||| || ||||||||||||||||            ||| ||||||||||||| |||||||    
T  10529565 tgtagttgataattatatgaattggtgagttgcaattttgttaaagtatgtgatttgatgaatgtgtaaatcttgatgttttcttatttgtgcaatgaga 10529466  T
Q  182 aatgttgttgaattaaagtgat 203  Q
    ||||||||||| ||||||||||    
T  10529465 aatgttgttgagttaaagtgat 10529444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 21 - 76
Target Start/End: Complemental strand, 46002850 - 46002795
Alignment:
Q  21 tgatgttgaatttgatatgcttcttgatttaatggatgagtgaaaagatttattgt 76  Q
    |||| |||||||||||||||||||||||| |||||||||||||||||||| |||||    
T  46002850 tgatattgaatttgatatgcttcttgattcaatggatgagtgaaaagattaattgt 46002795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 70
Target Start/End: Original strand, 31211136 - 31211188
Alignment:
Q  18 ttatgatgttgaatttgatatgcttcttgatttaatggatgagtgaaaagatt 70  Q
    ||||||| || ||||||||||||||||||||||||| |||| ||||| |||||    
T  31211136 ttatgatattaaatttgatatgcttcttgatttaatagatgcgtgaagagatt 31211188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 145; Significance: 2e-76; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 17 - 185
Target Start/End: Complemental strand, 31654685 - 31654518
Alignment:
Q  17 attatgatgttgaatttgatatgcttcttgatttaatggatgagtgaaaagatttattgtgttttattattttttcatgtagttgctaattataagaatt 116  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||    
T  31654685 attatgatgttggatttgatatgcttcttgatttaatggatgagtgaaaagatttattgtgttttattattttt-cttgtagttgctaattataagaatt 31654587  T
Q  117 ggtgagttacaattttgttagagcatgtgatttgatgaatatgatttcttatttgtgaaatgagaaatg 185  Q
    |||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  31654586 ggtgagttgcaattttgttagagcatgtgatttgatgaatatgatttgttatttgtgaaatgagaaatg 31654518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 17 - 156
Target Start/End: Complemental strand, 51443636 - 51443498
Alignment:
Q  17 attatgatgttgaatttgatatgcttcttgatttaatggatgagtgaaaagatttattgtgttttattattttttcatgtagttgctaattataagaatt 116  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||  ||||| |||||||| |||||||| |||||    
T  51443636 attatgatgttgaatttgatatgcttcttgatttaatggatgagtgaaaagatttattatgttttatta-attttcttgtagttgataattatatgaatt 51443538  T
Q  117 ggtgagttacaattttgttagagcatgtgatttgatgaat 156  Q
    |||||||| ||||||||||| || |||||||||| |||||    
T  51443537 ggtgagttgcaattttgttaaagtatgtgatttgttgaat 51443498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 18 - 203
Target Start/End: Complemental strand, 13380330 - 13380135
Alignment:
Q  18 ttatgatgttgaatttgatatgcttcttgatttaatggatgagtgaaaagatttattgtgttttattattttttcatgtagttgctaattataagaattg 117  Q
    |||||| |||||||||||||| |||||||||| | |||||||||||||||||||||| |||||||||| |||| | |||||||| |||||||| ||||||    
T  13380330 ttatgacgttgaatttgatatacttcttgattca-tggatgagtgaaaagatttattatgttttattaatttt-cttgtagttgataattatatgaattg 13380233  T
Q  118 gtgagttacaattttgttagagcatgtgatttgatgaat------------atgatttcttatttgtgaaatgagaaatgttgttgaattaaagtgat 203  Q
    ||||||| ||||||||||| || ||||||||||||||||            ||| ||||||||||||| |||||||||||||||||| ||||||||||    
T  13380232 gtgagttgcaattttgttaaagtatgtgatttgatgaatgtgtaaatcttgatgttttcttatttgtgtaatgagaaatgttgttgagttaaagtgat 13380135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 67 - 203
Target Start/End: Complemental strand, 8311247 - 8311100
Alignment:
Q  67 gatttattgtgttttattattttttcatgtagttgctaattataagaattggtgagttacaattttgttagagcatgtgatttgatgaat---------- 156  Q
    |||||||| ||||| |||| |||| | |||||||  |||||||||||||||||| ||| |||| |||||| || ||||||||||||||||              
T  8311247 gatttattatgtttgattaatttt-cttgtagttaataattataagaattggtgggttgcaatcttgttaaagtatgtgatttgatgaatgtgtaaatct 8311149  T
Q  157 --atgatttcttatttgtgaaatgagaaatgttgttgaattaaagtgat 203  Q
      ||| ||||||||||||| |||||||||||||||||| ||||||||||    
T  8311148 tgatgttttcttatttgtgcaatgagaaatgttgttgagttaaagtgat 8311100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 142; Significance: 1e-74; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 17 - 202
Target Start/End: Original strand, 107900 - 108084
Alignment:
Q  17 attatgatgttgaatttgatatgcttcttgatttaatggatgagtgaaaagatttattgtgttttattattttttcatgtagttgctaattataagaatt 116  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||   |||||||||||||||||||||||    
T  107900 attatgatgttgaatttgatatgctccttgatttaatggatgagtgaaaagatttattgtattttattatttttgt-tgtagttgctaattataagaatt 107998  T
Q  117 ggtgagttacaattttgttagagcatgtgatttgatgaatatgatttcttatttgtgaaatgagaaatgttgttgaattaaagtga 202  Q
    |||||||| ||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||| ||| |||||    
T  107999 ggtgagttgcaattttgttagaacatgtgatttgatgaatatgatttcttatttgtgcaatgagaaatgttgttgagttagagtga 108084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 135; Significance: 2e-70; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 17 - 202
Target Start/End: Complemental strand, 29046671 - 29046489
Alignment:
Q  17 attatgatgttgaatttgatatgcttcttgatttaatggatgagtgaaaagatttattgtgttttattattttttcatgtagttgctaattataagaatt 116  Q
    ||||||||||||||||||||||||| ||||||||||||||||| |||||| ||||||||| ||||||||||||| | |||||||||||||||  ||||||    
T  29046671 attatgatgttgaatttgatatgctccttgatttaatggatgattgaaaatatttattgtattttattattttt-cttgtagttgctaatta--agaatt 29046575  T
Q  117 ggtgagttacaattttgttagagcatgtgatttgatgaatatgatttcttatttgtgaaatgagaaatgttgttgaattaaagtga 202  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||    
T  29046574 ggtgagttgcaattttgttagagcatgtgatttgatgaatatgatttcttatttgtgcaatgagaaatgttgttgagttaaagtga 29046489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 17 - 203
Target Start/End: Complemental strand, 27977261 - 27977064
Alignment:
Q  17 attatgatgttgaatttgatatgcttcttgatttaatggatgagtgaaaagatttattgtgttttattattttttcatgtagttgctaattataagaatt 116  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||  ||||| |||||||| |||||||| |||||    
T  27977261 attatgatgttgaatttgatatgcttcttgatttaatggatgagtgaaaagatttattatgtttcatta-attttcttgtagttgataattatatgaatt 27977163  T
Q  117 ggtgagttacaattttgttagagcatgtgatttgatgaat------------atgatttcttatttgtgaaatgagaaatgttgttgaattaaagtgat 203  Q
     ||||||| ||||||||||| || ||||||||||||||||            ||| ||||||||||||| |||||||||||||||||| ||||||||||    
T  27977162 tgtgagttgcaattttgttaaagtatgtgatttgatgaatgtgtaaatcttgatgttttcttatttgtgcaatgagaaatgttgttgagttaaagtgat 27977064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 17 - 203
Target Start/End: Complemental strand, 28063789 - 28063592
Alignment:
Q  17 attatgatgttgaatttgatatgcttcttgatttaatggatgagtgaaaagatttattgtgttttattattttttcatgtagttgctaattataagaatt 116  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||  ||||| |||||||| |||||||| |||||    
T  28063789 attatgatgttgaatttgatatgcttcttgatttaatggatgagtgaaaagatttattatgtttcatta-attttcttgtagttgataattatatgaatt 28063691  T
Q  117 ggtgagttacaattttgttagagcatgtgatttgatgaat------------atgatttcttatttgtgaaatgagaaatgttgttgaattaaagtgat 203  Q
     ||||||| ||||||||||| || ||||||||||||||||            ||| ||||||||||||| |||||||||||||||||| ||||||||||    
T  28063690 tgtgagttgcaattttgttaaagtatgtgatttgatgaatgtgtaaatcttgatgttttcttatttgtgcaatgagaaatgttgttgagttaaagtgat 28063592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 18 - 203
Target Start/End: Complemental strand, 16131190 - 16130995
Alignment:
Q  18 ttatgatgttgaatttgatatgcttcttgatttaatggatgagtgaaaagatttattgtgttttattattttttcatgtagttgctaattataagaattg 117  Q
    |||||||| |||||| || ||||||||||||| | | |||||||||||||||||| | | |||||||| |||||  |||||||| |||||||| ||||||    
T  16131190 ttatgatgctgaattcgacatgcttcttgattca-tagatgagtgaaaagatttactatattttattaatttttt-tgtagttgataattatatgaattg 16131093  T
Q  118 gtgagttacaattttgttagagcatgtgatttgatgaat------------atgatttcttatttgtgaaatgagaaatgttgttgaattaaagtgat 203  Q
    ||||||| ||||||||||| || ||||||||||||||||            ||| ||||||||||||| |||||||||||||||||| ||||||||||    
T  16131092 gtgagttgcaattttgttaaagtatgtgatttgatgaatgtgtaaatcttgatgttttcttatttgtgcaatgagaaatgttgttgagttaaagtgat 16130995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 52 - 203
Target Start/End: Original strand, 22403839 - 22404001
Alignment:
Q  52 atggatgagtgaaaagatttattgtgttttattattttttcatgtagttgctaattataagaattggtgagttacaattttgttagagcatgtgatttga 151  Q
    ||||||||||||||||||||||| ||||||||||  ||||| || ||||  |||||||||||||||||| ||| |||| |||| | || |||||||||||    
T  22403839 atggatgagtgaaaagatttattatgttttatta-attttcttgaagttaataattataagaattggtgggttgcaatcttgtaaaagtatgtgatttga 22403937  T
Q  152 tgaatatg------------atttcttatttgtgaaatgagaaatgttgttgaattaaagtgat 203  Q
    ||||| ||             ||||||||||||| |||||||||||||||||| ||||||||||    
T  22403938 tgaatgtgtaaatcttggtattttcttatttgtgcaatgagaaatgttgttgagttaaagtgat 22404001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 18 - 90
Target Start/End: Complemental strand, 28497301 - 28497230
Alignment:
Q  18 ttatgatgttgaatttgatatgcttcttgatttaatggatgagtgaaaagatttattgtgttttattattttt 90  Q
    ||||||||||||||| || ||||||||||||| | || ||||||||||||||||||| |||||||||| ||||    
T  28497301 ttatgatgttgaattcgacatgcttcttgattca-tgaatgagtgaaaagatttattatgttttattaatttt 28497230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022 (Bit Score: 102; Significance: 8e-51; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 17 - 203
Target Start/End: Original strand, 2067 - 2264
Alignment:
Q  17 attatgatgttgaatttgatatgcttcttgatttaatggatgagtgaaaagatttattgtgttttattattttttcatgtagttgctaattataagaatt 116  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||  ||||| |||||||| |||||||| |||||    
T  2067 attatgatgttgaatttgatatgcttcttgatttaatggatgagtgaaaagatttattatgttttatta-attttcttgtagttgataattatatgaatt 2165  T
Q  117 ggtgagttacaattttgttagagcatgtgatttgatgaat------------atgatttcttatttgtgaaatgagaaatgttgttgaattaaagtgat 203  Q
    ||||| || ||||||||||| || ||||||||||||||||            ||| ||||||||||||| |||||||||||||||||| ||||||||||    
T  2166 ggtgacttgcaattttgttaaagtatgtgatttgatgaatgtgtaaatcttgatgttttcttatttgtgcaatgagaaatgttgttgagttaaagtgat 2264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0028 (Bit Score: 97; Significance: 8e-48; HSPs: 1)
Name: scaffold0028
Description:

Target: scaffold0028; HSP #1
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 87 - 203
Target Start/End: Complemental strand, 148438 - 148322
Alignment:
Q  87 tttttcatgtagttgctaattataagaattggtgagttacaattttgttagagcatgtgatttgatgaatatgatttcttatttgtgaaatgagaaatgt 186  Q
    |||||| ||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||    
T  148438 tttttcttgtagttgctaattataagaattggtgagttgcaattttgttagagtatgtgatttgatgaatatcatttcttatttgtgaaatgagaaatgt 148339  T
Q  187 tgttgaattaaagtgat 203  Q
    ||||||||| |||||||    
T  148338 tgttgaatttaagtgat 148322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 94; Significance: 5e-46; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 17 - 203
Target Start/End: Complemental strand, 15990280 - 15990083
Alignment:
Q  17 attatgatgttgaatttgatatgcttcttgatttaatggatgagtgaaaagatttattgtgttttattattttttcatgtagttgctaattataagaatt 116  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||  ||||| |||||||| ||||||||||||||    
T  15990280 attatgacgttgaatttgatatgcttcttgatttaatggatgagtgaaaagaattattatgttttatta-attttcttgtagttgataattataagaatt 15990182  T
Q  117 ggtgagttacaattttgttagagcatgtgatttgatgaat------------atgatttcttatttgtgaaatgagaaatgttgttgaattaaagtgat 203  Q
    |||| ||| |||| |||||| || ||||||||||||||||            ||| ||||||||||||| |||||||||||||||||| ||||||||||    
T  15990181 ggtgggttgcaatcttgttaaagtatgtgatttgatgaatgtgtaaatcttgatgttttcttatttgtgcaatgagaaatgttgttgagttaaagtgat 15990083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 17 - 156
Target Start/End: Complemental strand, 40888800 - 40888663
Alignment:
Q  17 attatgatgttgaatttgatatgcttcttgatttaatggatgagtgaaaagatttattgtgttttattattttttcatgtagttgctaattataagaatt 116  Q
    ||||||| ||||||||| ||||||||||||||| | |||||||||||||||||||||| | |||||||| |||| | |||||||| |||||||| |||||    
T  40888800 attatgacgttgaatttaatatgcttcttgattca-tggatgagtgaaaagatttattatattttattaatttt-cttgtagttgataattatatgaatt 40888703  T
Q  117 ggtgagttacaattttgttagagcatgtgatttgatgaat 156  Q
    |||||||| ||||||||||| || ||||||||||||||||    
T  40888702 ggtgagttgcaattttgttaaagtatgtgatttgatgaat 40888663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 17 - 203
Target Start/End: Original strand, 29453692 - 29453889
Alignment:
Q  17 attatgatgttgaatttgatatgcttcttgatttaatggatgagtgaaaagatttattgtgtttt-attattttttcatgtagttgctaattataagaat 115  Q
    |||||||  |||||||||||||||||||||||| | |||||||||||||||||||||| |||||| |||| |||| | |||||||| |||||||| ||||    
T  29453692 attatgacattgaatttgatatgcttcttgattca-tggatgagtgaaaagatttattatgtttttattaatttt-cttgtagttgataattatatgaat 29453789  T
Q  116 tggtgagttacaattttgttagagcatgtgatttgatgaat------------atgatttcttatttgtgaaatgagaaatgttgttgaattaaagtgat 203  Q
    ||||||||| ||||||||||| || ||||||||||||||||            ||| ||||||||||||| |||||||||||||||||| ||| ||||||    
T  29453790 tggtgagttgcaattttgttaaagtatgtgatttgatgaatgtgtaaatcttgatgttttcttatttgtgcaatgagaaatgttgttgagttagagtgat 29453889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 17 - 73
Target Start/End: Complemental strand, 52641442 - 52641386
Alignment:
Q  17 attatgatgttgaatttgatatgcttcttgatttaatggatgagtgaaaagatttat 73  Q
    ||||||||||||||||||||||||||||||| | |||||||||||||||||||||||    
T  52641442 attatgatgttgaatttgatatgcttcttgactcaatggatgagtgaaaagatttat 52641386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 18 - 74
Target Start/End: Complemental strand, 19544769 - 19544714
Alignment:
Q  18 ttatgatgttgaatttgatatgcttcttgatttaatggatgagtgaaaagatttatt 74  Q
    ||||||||||||||| ||||||||| ||||||  |||||||||||||||||||||||    
T  19544769 ttatgatgttgaatt-gatatgcttattgattcgatggatgagtgaaaagatttatt 19544714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 107 - 156
Target Start/End: Complemental strand, 19544665 - 19544616
Alignment:
Q  107 tataagaattggtgagttacaattttgttagagcatgtgatttgatgaat 156  Q
    |||||||||| ||||||| ||||||||||| || ||||||||||| ||||    
T  19544665 tataagaatttgtgagttgcaattttgttaaagtatgtgatttgaagaat 19544616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 61
Target Start/End: Complemental strand, 11650632 - 11650592
Alignment:
Q  21 tgatgttgaatttgatatgcttcttgatttaatggatgagt 61  Q
    |||| |||||||||||||||||||||||| ||| |||||||    
T  11650632 tgatattgaatttgatatgcttcttgattcaattgatgagt 11650592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0259 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: scaffold0259
Description:

Target: scaffold0259; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 18 - 86
Target Start/End: Complemental strand, 2612 - 2544
Alignment:
Q  18 ttatgatgttgaatttgatatgcttcttgatttaatggatgagtgaaaagatttattgtgttttattat 86  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2612 ttatgatgttgaatttgacatgcttcttgatttaatggatgagtgaaaagatttattgtgttttattat 2544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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