View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2931_low_3 (Length: 611)
Name: NF2931_low_3
Description: NF2931
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2931_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 563; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 563; E-Value: 0
Query Start/End: Original strand, 5 - 603
Target Start/End: Complemental strand, 38185049 - 38184451
Alignment:
| Q |
5 |
gcaaaggtggcacgtgagcttcacctcccatcagcgctattatggattcaagctgcaacggtttttgatatctactattattactttcatgagcatggtg |
104 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
38185049 |
gcaaaggtggcacgtgagcttcacctcccatcagcgctattatggattcaagctgcaacggtttttgatatctactattattactttcatgaacatggtg |
38184950 |
T |
|
| Q |
105 |
actacatcacaaacaaatcaaaggatgaaacatgttcaatatcattaccaggattgtcattctctcttgaaagtcgtgaccttccctcttttttattatc |
204 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
38184949 |
actacatcacaaacaaatcaaaggatgaaacatgttcaatatcattaccaggattgtcattctctcttgaaagccgtgaccttccctcttttttattatc |
38184850 |
T |
|
| Q |
205 |
ttcaaatatatacactatcgctactcaatctttcaaagaacaaattcaagttctagatgaagaaaccaaccctaaagtacttgttaacaccgttgaagag |
304 |
Q |
| |
|
|||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
38184849 |
ttcaaatatatatactatcgctactcgatctttcaaagaacaaattcaagttctagatgaagaaaccaaccctacagtacttgttaacaccgttgaagag |
38184750 |
T |
|
| Q |
305 |
tttgaattagaggcactaaaagccgttgatgttggtaagatcaaaatgataccaatcggaccattgattccatatgctttcttgggcggtaaagatccta |
404 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38184749 |
tttgaattagaggcactaaaagccgttgatgttggtaagatcaaaatgataccaatcggaccattgattccatatgctttcttgggcggtaaagatccta |
38184650 |
T |
|
| Q |
405 |
atgatactttgtctggtggtggtgttgtcggggttgaatcagaagataattactttgaatggttggattcaaaggatgaatcgtctgtggtttatgtttc |
504 |
Q |
| |
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||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38184649 |
atgatacttcgtctggtggtggtgttgtcgatgttgaatcagaagataattactttgaatggttggattcaaaggatgaatcgtctgtggtttatgtttc |
38184550 |
T |
|
| Q |
505 |
atttggtactcttgctattttgtccaagagacaaatggaggaaattggacgtgcgttgttggattctggattttatttcttgtgggtaattagtgatga |
603 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
38184549 |
atttggtactcttgctattttgtccaagagacaaatggaggaaattggacgtgcgttgttggattctggattttatttcttgtgggtaattagagatga |
38184451 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 555; E-Value: 0
Query Start/End: Original strand, 5 - 603
Target Start/End: Complemental strand, 38180380 - 38179782
Alignment:
| Q |
5 |
gcaaaggtggcacgtgagcttcacctcccatcagcgctattatggattcaagctgcaacggtttttgatatctactattattactttcatgagcatggtg |
104 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
38180380 |
gcaaaggtggcacgtgagcttcacctcccatcagcgctattatggattcaagctgcaacagtttttgatatctactattattactttcatgagcatggtg |
38180281 |
T |
|
| Q |
105 |
actacatcacaaacaaatcaaaggatgaaacatgttcaatatcattaccaggattgtcattctctcttgaaagtcgtgaccttccctcttttttattatc |
204 |
Q |
| |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
38180280 |
actacgtcacaaacaaatcaaaggatgaaacatgttcaatatcattaccaggattgtcattctctcttgaaagccgtgaccttccctcttttttattatc |
38180181 |
T |
|
| Q |
205 |
ttcaaatatatacactatcgctactcaatctttcaaagaacaaattcaagttctagatgaagaaaccaaccctaaagtacttgttaacaccgttgaagag |
304 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
38180180 |
ttcaaatatatacactatcgctactcaatctttcaaagaacaaattcaagttctatatgaagaaaccaaccctaaagtacttgttaacaccgttgaagag |
38180081 |
T |
|
| Q |
305 |
tttgaattagaggcactaaaagccgttgatgttggtaagatcaaaatgataccaatcggaccattgattccatatgctttcttgggcggtaaagatccta |
404 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
38180080 |
tttgaattagaggcactaaaagccgttgacgttggtaagatcaaaatgataccaatcggaccattgattccatatactttcttgggcggtaaagatccta |
38179981 |
T |
|
| Q |
405 |
atgatactttgtctggtggtggtgttgtcggggttgaatcagaagataattactttgaatggttggattcaaaggatgaatcgtctgtggtttatgtttc |
504 |
Q |
| |
|
||||||||| |||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
38179980 |
atgatacttcgtctagtggtggtgttgtcggtgttgaatcagaagataattactttgaatggttggattcaaaggatgaatcgtctgtggtttatgtttc |
38179881 |
T |
|
| Q |
505 |
atttggtactcttgctattttgtccaagagacaaatggaggaaattggacgtgcgttgttggattctggattttatttcttgtgggtaattagtgatga |
603 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
38179880 |
atttggtactcttgctattttgtccaatagacaaatggaggaaattggacgtgcgttgttggattctggattttatttcttgtgggtaattagagatga |
38179782 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 8 - 597
Target Start/End: Complemental strand, 38170563 - 38169974
Alignment:
| Q |
8 |
aaggtggcacgtgagcttcacctcccatcagcgctattatggattcaagctgcaacggtttttgatatctactattattactttcatgagcatggtgact |
107 |
Q |
| |
|
|||||||||| ||||||||||||||||||| | || || ||||||||||| |||||||| |||||||| | |||||||||||||||||| || ||||||| |
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| T |
38170563 |
aaggtggcacatgagcttcacctcccatcaacactgttgtggattcaagcagcaacggtgtttgatatattctattattactttcatgaacacggtgact |
38170464 |
T |
|
| Q |
108 |
acatcacaaacaaatcaaaggatgaaacatgttcaatatcattaccaggattgtcattctctcttgaaagtcgtgaccttccctcttttttattatcttc |
207 |
Q |
| |
|
|||||||||||||||||||||||||||| |||| |||||||||||| |||||||||||||||||| |||| || |||||||||||||||||||| |||| |
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| T |
38170463 |
acatcacaaacaaatcaaaggatgaaacgtgtttaatatcattaccgggattgtcattctctcttaaaagccgcgaccttccctcttttttattggcttc |
38170364 |
T |
|
| Q |
208 |
aaatatatacactatcgctactcaatctttcaaagaacaaattcaagttctaga-tgaagaaaccaaccctaaagtacttgttaacaccgttgaagagtt |
306 |
Q |
| |
|
||||| ||||||| | ||| || |||| ||||||| |||||||| ||| | || |||||||| |||||| | ||||||||| ||||||||||| ||||| |
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|
| T |
38170363 |
aaatacatacacttttgctcttccatctctcaaagagcaaattca-gttgttgaatgaagaaatcaacccaagagtacttgtgaacaccgttgaggagtt |
38170265 |
T |
|
| Q |
307 |
tgaattagaggcactaaaagccgttgatgttggtaagatcaaaatgataccaatcggaccattgattccatatgctttcttgggcggtaaagatcctaat |
406 |
Q |
| |
|
|||| | || ||||| || ||||||||||||||||||||||||||||| |||||||| |||||||||| ||||||||||| || || ||||||| |
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|
| T |
38170264 |
tgaactggatgcactgaataaagttgatgttggtaagatcaaaatgatacccatcggaccgttgattccatctgctttcttggatggcaaggatcctacg |
38170165 |
T |
|
| Q |
407 |
gatactttgtctggtggtggtgttgtcggggttgaatcagaagataattactttgaatggttggattcaaaggatgaatcgtctgtggtttatgtttcat |
506 |
Q |
| |
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|||| || || |||||||| |||||| | ||||| ||| | ||| ||||| || ||||||||||||||||||||||| |||||| ||||||||||||| |
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|
| T |
38170164 |
gataattcgtttggtggtgacgttgtccgtgttgactcaaaggatgattacattcaatggttggattcaaaggatgaaaagtctgttgtttatgtttcat |
38170065 |
T |
|
| Q |
507 |
ttggtactcttgctattttgtccaagagacaaatggaggaaattggacgtgcgttgttggattctggattttatttcttgtgggtaattag |
597 |
Q |
| |
|
|||||||||||||| ||||||| || ||||||||||||||||||| |||||| ||||||||||||||||||| |||||||||||| ||||| |
|
|
| T |
38170064 |
ttggtactcttgctgttttgtctaaaagacaaatggaggaaattgcacgtgccttgttggattctggattttctttcttgtgggttattag |
38169974 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 483 - 591
Target Start/End: Original strand, 35053880 - 35053988
Alignment:
| Q |
483 |
aatcgtctgtggtttatgtttcatttggtactcttgctattttgtccaagagacaaatggaggaaattggacgtgcgttgttggattctggattttattt |
582 |
Q |
| |
|
|||| ||||||||||||||||||||||||| | | ||||||| ||||||||| ||||||||||| || ||| |||||||||| ||||||| || |
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|
| T |
35053880 |
aatcttctgtggtttatgtttcatttggtagttactttgttttgtctgagagacaaagggaggaaattgcacatgctttgttggattgtggatttccatt |
35053979 |
T |
|
| Q |
583 |
cttgtgggt |
591 |
Q |
| |
|
||||||||| |
|
|
| T |
35053980 |
cttgtgggt |
35053988 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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