View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2932_high_10 (Length: 525)
Name: NF2932_high_10
Description: NF2932
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2932_high_10 |
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Alignment Details
Target: chr4 (Bit Score: 419; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 419; E-Value: 0
Query Start/End: Original strand, 13 - 506
Target Start/End: Original strand, 40541942 - 40542437
Alignment:
| Q |
13 |
cagatgcaggctgaggctggaggaggttctcaaggctccggtggtggcggtggcggcaataataataacaatccatttcctgatccatcttctggtttac |
112 |
Q |
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| T |
40541942 |
cagatgcaggctgaggctggaggaggttctcaaggctccggtggtggcggtggcggcaataataataacaatccatttcctgatccatcttctggtttac |
40542041 |
T |
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| Q |
113 |
cgtttttcaatttgccattgaatatgcagaatgttcatcagttacctgttgatggttgggcgggaaacaacaacaactcagcttcacgtcaacctttttg |
212 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40542042 |
cgtttttcaatttgccattgaatatgcagaatgttcatcagctacctgttgatggttgggcgggaaacaacaacaactcagcttcacgtcaacctttttg |
40542141 |
T |
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| Q |
213 |
aggatttagaattaatcaaattgaatgagtgagtcttgttttgaacatgttttgttgaggatgatgatgatgatgttggaatggagtttgaagtgattat |
312 |
Q |
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| T |
40542142 |
aggatttagaattaatcaaattgaatgagtgagtcttgttttgaacatgttttgttgag------gatgatgatgttggaatggagtttgaagtgattat |
40542235 |
T |
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| Q |
313 |
ttttaaggtcagtgttaatctatggatgatgatttagtagtggtttcaatcatgttatgtacttcttttagtacttataatttagttttgtcnnnnnnnn |
412 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40542236 |
ttttaaggtcagtgttaatctatggatgatgatttagtagtggtttcaatcatgttatgtacttcttttagtacttataatttagttttgtcaaaaaaaa |
40542335 |
T |
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| Q |
413 |
ngtacttatgatttagtgtctcattggtttttaaattggatatttggg--------actttccttgctcattgttagtattattatatggaacatgacta |
504 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40542336 |
agtacttatgatttagtgtctcattggtttttaaattggatatttgggattttattactttccttgctcattgttagtattattatatggaacatgacta |
40542435 |
T |
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