View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2932_high_16 (Length: 449)

Name: NF2932_high_16
Description: NF2932
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2932_high_16
NF2932_high_16
[»] chr8 (1 HSPs)
chr8 (13-432)||(10402836-10403255)
[»] chr6 (2 HSPs)
chr6 (22-423)||(20231671-20232072)
chr6 (22-423)||(22125655-22126056)


Alignment Details
Target: chr8 (Bit Score: 408; Significance: 0; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 408; E-Value: 0
Query Start/End: Original strand, 13 - 432
Target Start/End: Original strand, 10402836 - 10403255
Alignment:
Q  13 aatatcactcaaacaagccttgcaatcatcacttgataaatcttgtgtacactgaccaagtgtataaagtgtttgcaaatcattcaatttcaatgatttt 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10402836 aatatcactcaaacaagccttgcaatcatcacttgataaatcttgtgtacactgaccaagtgtataaagtgtttgcaaatcattcaatttcaatgatttt 10402935  T
Q  113 gttccatatctcttatcactatccccagctacaattgccacttttgataaggcatttgatattacaaaattatacaagtttctctcctttttgggactag 212  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10402936 gttccatatctcttatcactatccccagccacaattgccacttttgataaggcatttgatattacaaaattatacaagtttctctcctttttgggactag 10403035  T
Q  213 aatcactagtaacattcatttcatgatacacatgacttttgtccactaaagagaagaaattccaataggaatatctaatcatgcattgattaaaccatat 312  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10403036 aatcaccagtaacattcatttcatgatacacatgacttttgtccactaaagagaagaaattccaataggaatatctaatcatgcattgattaaaccatat 10403135  T
Q  313 tataccctcttgaaaaatgttacacttttgggttatttgatgtgttgcattttgcacacattgttcacataagtaaaagggaacatcaccacgacacatg 412  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10403136 tataccctcttgaaaaatgttacacttttgggttattttatgtgttgcattttgcacacattgttcacataagtaaaagggaacatcaccacgacacatg 10403235  T
Q  413 aagagtccaaatattgtacc 432  Q
    ||||||||||||||||||||    
T  10403236 aagagtccaaatattgtacc 10403255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 222; Significance: 1e-122; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 22 - 423
Target Start/End: Complemental strand, 20232072 - 20231671
Alignment:
Q  22 caaacaagccttgcaatcatcacttgataaatcttgtgtacactgaccaagtgtataaagtgtttgcaaatcattcaatttcaatgattttgttccatat 121  Q
    ||||||| | ||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||| ||||| ||||||||||||| ||    
T  20232072 caaacaacctttgcaatcatcacttgacaaatcttgtgtacattgaccaagtgtataaagtgtttgcaaatcattcactttcagtgattttgttccaaat 20231973  T
Q  122 ctcttatcactatccccagctacaattgccacttttgataaggcatttgatattacaaaattatacaagtttctctcctttttgggactagaatcactag 221  Q
    || | ||||||||| || || ||||||||||| |||||||||| | ||||||| ||||||||  |||||||||||||||| |||||||||||||||||||    
T  20231972 ctttcatcactatctcctgccacaattgccacatttgataaggtagttgatataacaaaattgaacaagtttctctccttgttgggactagaatcactag 20231873  T
Q  222 taacattcatttcatgatacacatgacttttgtccactaaagagaagaaattccaataggaatatctaatcatgcattgattaaaccatattataccctc 321  Q
    ||| |||||| |||| ||| |||||| |||||||||||| |||||||||||||||||  ||||| | ||||||||||||| || |||| |||||||||||    
T  20231872 taatattcatctcataatagacatgagttttgtccactatagagaagaaattccaattcgaataccgaatcatgcattgagtataccaaattataccctc 20231773  T
Q  322 ttgaaaaatgttacacttttgggttatttgatgtgttgcattttgcacacattgttcacataagtaaaagggaacatcaccacgacacatgaagagtcca 421  Q
    ||||||||||||||||| || | |||||   ||||||||||||| |||||| || ||||||||  ||||||||||||| ||||| |||||||||||||||    
T  20231772 ttgaaaaatgttacactctttgcttattctttgtgttgcatttttcacacactgctcacataacgaaaagggaacatcgccacggcacatgaagagtcca 20231673  T
Q  422 aa 423  Q
    ||    
T  20231672 aa 20231671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 22 - 423
Target Start/End: Complemental strand, 22126056 - 22125655
Alignment:
Q  22 caaacaagccttgcaatcatcacttgataaatcttgtgtacactgaccaagtgtataaagtgtttgcaaatcattcaatttcaatgattttgttccatat 121  Q
    ||||||| | ||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||| ||||| ||||||||||||| ||    
T  22126056 caaacaacctttgcaatcatcacttgacaaatcttgtgtacattgaccaagtgtataaagtgtttgcaaatcattcactttcagtgattttgttccaaat 22125957  T
Q  122 ctcttatcactatccccagctacaattgccacttttgataaggcatttgatattacaaaattatacaagtttctctcctttttgggactagaatcactag 221  Q
    || | ||||||||| || || ||||||||||| |||||||||| | ||||||| ||||||||  |||||||||||||||| |||||||||||||||||||    
T  22125956 ctttcatcactatctcctgccacaattgccacatttgataaggtagttgatataacaaaattgaacaagtttctctccttgttgggactagaatcactag 22125857  T
Q  222 taacattcatttcatgatacacatgacttttgtccactaaagagaagaaattccaataggaatatctaatcatgcattgattaaaccatattataccctc 321  Q
    ||| |||||| |||| ||| |||||| |||||||||||| |||||||||||||||||  ||||| | ||||||||||||| || |||| |||||||||||    
T  22125856 taatattcatctcataatagacatgagttttgtccactatagagaagaaattccaattcgaataccgaatcatgcattgagtataccaaattataccctc 22125757  T
Q  322 ttgaaaaatgttacacttttgggttatttgatgtgttgcattttgcacacattgttcacataagtaaaagggaacatcaccacgacacatgaagagtcca 421  Q
    ||||||||||||||||| || | |||||   ||||||||||||| |||||| || ||||||||  ||||||||||||| ||||| |||||||||||||||    
T  22125756 ttgaaaaatgttacactctttgcttattctttgtgttgcatttttcacacactgctcacataacgaaaagggaacatcgccacggcacatgaagagtcca 22125657  T
Q  422 aa 423  Q
    ||    
T  22125656 aa 22125655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University