View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2932_high_18 (Length: 440)
Name: NF2932_high_18
Description: NF2932
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2932_high_18 |
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Alignment Details
Target: chr2 (Bit Score: 275; Significance: 1e-153; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 275; E-Value: 1e-153
Query Start/End: Original strand, 23 - 429
Target Start/End: Complemental strand, 31910859 - 31910455
Alignment:
| Q |
23 |
ttccaccttttagttgtcaaattgattacatattcaactacaagagtaaccttnnnnnnnnctgtaattgacgttcaaaagttaagggaaaaaacaagtg |
122 |
Q |
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| T |
31910859 |
ttccacattttagttgtcaaattggttacatattcaactacaaaaataacgttaaaaaaat-tataattgacgttcaaaagctaagggaaaaaactagtg |
31910761 |
T |
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| Q |
123 |
tgaaacaattgctgacgaggctagaaagaaaataaaagagattgaaaatattgtctagaattgtacaacaccaaagaccatgctaaatttattgatttat |
222 |
Q |
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| T |
31910760 |
tgaaacaattgatgacgaggatagaaagaaaatagaagaaattaaaaatattgtctagaattgtacaacaccaaagatcatgctaaatttattgatttat |
31910661 |
T |
|
| Q |
223 |
ataaaatatttcaactcgtattttggacatcttgatagtattttccgtataacttttaatatacatgtcatttttaagtgattttggttactttgagaag |
322 |
Q |
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| T |
31910660 |
ataaaatattgcaaatcgtattttggatatcttgatagtattt-ccgtataacttttaatatacatgccatttttaagtgattttagttacattgagaag |
31910562 |
T |
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| Q |
323 |
aagacttaattcccttcagttttctcacaattttggttgcaattaactgactatttatagtctaaattgtgttacaaaatgagataaaagttgttttcgt |
422 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||| |||| |
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| T |
31910561 |
aagacttaattcccttcagttttctcacaattttggttgcaattaactgactattgatagtctaaattgtgttataaaatgagataaaagttgttctcgt |
31910462 |
T |
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| Q |
423 |
atttcat |
429 |
Q |
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||||||| |
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| T |
31910461 |
atttcat |
31910455 |
T |
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