View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2932_high_20 (Length: 410)
Name: NF2932_high_20
Description: NF2932
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2932_high_20 |
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Alignment Details
Target: chr7 (Bit Score: 369; Significance: 0; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 1 - 397
Target Start/End: Original strand, 1393415 - 1393811
Alignment:
| Q |
1 |
tggcattcacatagtggtgcattatgataaggccagtatacaannnnnnnnccaatctcatgtggttaatatggaatgtttatcattttcacaatccaaa |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1393415 |
tggcattcacatagtggtgcattatgataaggccagtatacaattttttttccaatctcatgtggttaatatggaatgtttatcattttcacaatccaaa |
1393514 |
T |
|
| Q |
101 |
accattggtataattaatcagaaaccaatttcaaaacattatataaatagctagtttcagtactagctgtgcaactcaattatagaacaatggcttcctc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1393515 |
accattggtataattaatcagaaaccaatttcaaaacattatataaatagctagtttcagtactagctgtgcaactcaattatagaacaatggcttcctc |
1393614 |
T |
|
| Q |
201 |
tatgatctcctcttcagctatcactacagttaaccgtgcctctccggtacaatccggtgcggtggctccattcgtcggactcaagtccatggctggcttc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1393615 |
tatgatctcctcttcagctatcactacagttaaccgtgcctctccggtacaatccggtgcggtggctccattcgtcggactcaagtccatggctggcttc |
1393714 |
T |
|
| Q |
301 |
ccaattacaaaggtcaacaaagacattacttccattacaagcaatggtggaagagtaaactgcatgcaggtgagaaatactaagtctagtttgaaat |
397 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1393715 |
ccaattacaaaggtcaacaaagacattacctccattacaagcaatggtggaagagtaaactgcatgcaggtgagaaatactaagtctagtttgaaat |
1393811 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 190 - 377
Target Start/End: Original strand, 1373291 - 1373478
Alignment:
| Q |
190 |
atggcttcctctatgatctcctcttcagctatcactacagttaaccgtgcctctccggtacaatccggtgcggtggctccattcgtcggactcaagtcca |
289 |
Q |
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||||||||||||||||| |||||||||||| | ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1373291 |
atggcttcctctatgatgtcctcttcagctgtgactacagttaaccgtgcctcttcggtacaatccggtgcggtggctccattcgtcggactcaagtcca |
1373390 |
T |
|
| Q |
290 |
tggctggcttcccaattacaaaggtcaacaaagacattacttccattacaagcaatggtggaagagtaaactgcatgcaggtgagaaa |
377 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
1373391 |
tggctggcttcccaattacaaaggtcaacaaagacattacctccattacaagcaatggcggaagagtaaactgcatgcaggtgagaaa |
1373478 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 190 - 377
Target Start/End: Original strand, 1383567 - 1383754
Alignment:
| Q |
190 |
atggcttcctctatgatctcctcttcagctatcactacagttaaccgtgcctctccggtacaatccggtgcggtggctccattcgtcggactcaagtcca |
289 |
Q |
| |
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||||||||||||||||| |||||||||||| | ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1383567 |
atggcttcctctatgatgtcctcttcagctgtgactacagttaaccgtgcctcttcggtacaatccggtgcggtggctccattcgtcggactcaagtcca |
1383666 |
T |
|
| Q |
290 |
tggctggcttcccaattacaaaggtcaacaaagacattacttccattacaagcaatggtggaagagtaaactgcatgcaggtgagaaa |
377 |
Q |
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|||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1383667 |
tggctggcttcccagttacaaaggttaacaaagacattacttccattacaagcaatggtggaagagtaaactgcatgcaggtgagaaa |
1383754 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 190 - 377
Target Start/End: Original strand, 1389672 - 1389859
Alignment:
| Q |
190 |
atggcttcctctatgatctcctcttcagctatcactacagttaaccgtgcctctccggtacaatccggtgcggtggctccattcgtcggactcaagtcca |
289 |
Q |
| |
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||||||||||||||||| |||||||||||| | ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1389672 |
atggcttcctctatgatgtcctcttcagctgtgactacagttaaccgtgcctcttcggtacaatccggtgcggtggctccattcgtcggactcaagtcca |
1389771 |
T |
|
| Q |
290 |
tggctggcttcccaattacaaaggtcaacaaagacattacttccattacaagcaatggtggaagagtaaactgcatgcaggtgagaaa |
377 |
Q |
| |
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|||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1389772 |
tggctggcttcccagttacaaaggttaacaaagacattacttccattacaagcaatggtggaagagtaaactgcatgcaggtgagaaa |
1389859 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 189 - 377
Target Start/End: Original strand, 1357947 - 1358135
Alignment:
| Q |
189 |
aatggcttcctctatgatctcctcttcagctatcactacagttaaccgtgcctctccggtacaatccggtgcggtggctccattcgtcggactcaagtcc |
288 |
Q |
| |
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|||||||||||||||||| |||||||||||||| |||||||||||||| |||||| ||||||||||||| ||||||||||||||||| |||||||||||| |
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| T |
1357947 |
aatggcttcctctatgatttcctcttcagctatgactacagttaaccgcgcctcttcggtacaatccggcgcggtggctccattcgttggactcaagtcc |
1358046 |
T |
|
| Q |
289 |
atggctggcttcccaattacaaaggtcaacaaagacattacttccattacaagcaatggtggaagagtaaactgcatgcaggtgagaaa |
377 |
Q |
| |
|
||||||||||||||| |||||||||||||||| |||||||| || |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1358047 |
atggctggcttcccagttacaaaggtcaacaaggacattacctctattacaagcaatggtggaagagtaaactgcatgcaggtgagaaa |
1358135 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 189 - 377
Target Start/End: Original strand, 1349992 - 1350180
Alignment:
| Q |
189 |
aatggcttcctctatgatctcctcttcagctatcactacagttaaccgtgcctctccggtacaatccggtgcggtggctccattcgtcggactcaagtcc |
288 |
Q |
| |
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|||||||||||||||||| |||||||||||| | |||||||||||||| | |||| ||||||||||||| ||||| ||||||||||| ||||| |||||| |
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| T |
1349992 |
aatggcttcctctatgatgtcctcttcagctgtgactacagttaaccgcgtctcttcggtacaatccggcgcggtagctccattcgttggacttaagtcc |
1350091 |
T |
|
| Q |
289 |
atggctggcttcccaattacaaaggtcaacaaagacattacttccattacaagcaatggtggaagagtaaactgcatgcaggtgagaaa |
377 |
Q |
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||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
1350092 |
atggctggcttcccagttacaaaggtcaacaaagacattacctccattacaagcaatggcggaagagtaaactgcatgcaggtgagaaa |
1350180 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 315 - 371
Target Start/End: Original strand, 7006346 - 7006402
Alignment:
| Q |
315 |
caacaaagacattacttccattacaagcaatggtggaagagtaaactgcatgcaggt |
371 |
Q |
| |
|
|||||| |||||||| ||||| |||||||||||||||||||| ||||| |||||||| |
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|
| T |
7006346 |
caacaatgacattacctccatcacaagcaatggtggaagagtgaactgtatgcaggt |
7006402 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 315 - 371
Target Start/End: Original strand, 7009427 - 7009483
Alignment:
| Q |
315 |
caacaaagacattacttccattacaagcaatggtggaagagtaaactgcatgcaggt |
371 |
Q |
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|||||| |||||||| |||||| ||||||||||||||||||| ||||| |||||||| |
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| T |
7009427 |
caacaatgacattacctccattgcaagcaatggtggaagagtgaactgtatgcaggt |
7009483 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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