View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2932_high_26 (Length: 353)
Name: NF2932_high_26
Description: NF2932
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2932_high_26 |
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Alignment Details
Target: chr5 (Bit Score: 336; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 1 - 344
Target Start/End: Original strand, 4677939 - 4678282
Alignment:
| Q |
1 |
atatgatctgcaacagcttgaagaaagtaacataattagtatagggaatgatttacacgtgaggaaagtttatggtattgatcttgattggcccgaacgt |
100 |
Q |
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| T |
4677939 |
atatgatctgcaacagcttgaagaaagtaacataattagtatagggaatgatttacacgtgaggaaagtttatggtattgatcttgattggcccgaacgt |
4678038 |
T |
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| Q |
101 |
cctttagacgcaatctcacaaattgttgattcgaatcctaagttgcggagagtactaagtagttcagcaagaattggctttgacttgaatgagaatgctt |
200 |
Q |
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| T |
4678039 |
ccgttagacgcaatctcacaaattgttgattcgaatcctaagttgcggagagtactaagtagttcagcaagaattggctttgacttgaatgagaatgctt |
4678138 |
T |
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| Q |
201 |
tcttatatggcggtggtggtggaggtggattgaaacgtacgcaccatagttccggaaatttgggctcgttattgaaagagcaacaagttatacctaaagt |
300 |
Q |
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| T |
4678139 |
tcttatatggcggcggtggtggaggtggattgaaacgtacgcaccatagttccggaaatttgggctcgttattgaaagagcaacaagttatacctaaagt |
4678238 |
T |
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| Q |
301 |
agttgattccttagatgatgtatctgagatgttatctgatgatg |
344 |
Q |
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| T |
4678239 |
agttgattccttagatgatgtatctgagatgttatctgatgatg |
4678282 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 124 - 180
Target Start/End: Complemental strand, 40777225 - 40777169
Alignment:
| Q |
124 |
tgttgattcgaatcctaagttgcggagagtactaagtagttcagcaagaattggctt |
180 |
Q |
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| T |
40777225 |
tgttgactcgactccaaaattgcgtagagtactaagcagttcagctagaattggctt |
40777169 |
T |
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