View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2932_high_39 (Length: 261)

Name: NF2932_high_39
Description: NF2932
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2932_high_39
NF2932_high_39
[»] chr3 (3 HSPs)
chr3 (6-261)||(28979992-28980249)
chr3 (10-127)||(2740933-2741052)
chr3 (10-61)||(28787276-28787327)
[»] chr5 (1 HSPs)
chr5 (6-256)||(16683630-16683885)
[»] scaffold0129 (2 HSPs)
scaffold0129 (6-141)||(29224-29361)
scaffold0129 (6-141)||(29017-29153)
[»] chr1 (2 HSPs)
chr1 (14-256)||(21680130-21680374)
chr1 (10-61)||(18851541-18851592)
[»] chr4 (2 HSPs)
chr4 (6-176)||(38641289-38641462)
chr4 (10-61)||(16639676-16639727)
[»] chr7 (1 HSPs)
chr7 (10-92)||(7619558-7619640)
[»] chr8 (1 HSPs)
chr8 (14-59)||(29129209-29129254)


Alignment Details
Target: chr3 (Bit Score: 227; Significance: 1e-125; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 6 - 261
Target Start/End: Original strand, 28979992 - 28980249
Alignment:
Q  6 attagagttaatccctaaccctaattgcagcaagggcccactttttgcttaatctccttccactaaaccctgttttggtgccttgcacaattcctaatca 105  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  28979992 attagagttaatccctaaccctaattgcagcaagggcccactttttgcttaatctccttccactaaaccctgttttggcgccttgcacaattcctaatca 28980091  T
Q  106 ccaaagtgtctgtattaaatgagaatgtggtagggacacacaatttattagcaagcaaacaagtctttaatgattcagggtt--atgtagtgcttgggaa 203  Q
    || || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||  ||||||||||||||||    
T  28980092 cccaactgtctgtattaaatgagaatgtggtagggacacacaatttattagcaagcaaacaagtctttaatgactcagggttccatgtagtgcttgggaa 28980191  T
Q  204 aaaatgcagccattattttgaatataaccaatgcagactatctgcataccctacacat 261  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  28980192 aaaatgcagccattattttgaatataaccaatggagactatctgcataccctacacat 28980249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 10 - 127
Target Start/End: Complemental strand, 2741052 - 2740933
Alignment:
Q  10 gagttaatccctaaccctaattgcagcaagggcccactttttgcttaatctccttccactaaaccctgttttggtgccttgcacaatt--cctaatcacc 107  Q
    ||||||||||||||||||||||||| ||||||||||| || ||||||||||| ||   ||||  | |||||||| ||||||||   ||   |||||||||    
T  2741052 gagttaatccctaaccctaattgcatcaagggcccacattatgcttaatctcttttgcctaatacatgttttggcgccttgcaattttgctctaatcacc 2740953  T
Q  108 aaagtgtctgtattaaatga 127  Q
     || ||||||||||||||||    
T  2740952 caactgtctgtattaaatga 2740933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 10 - 61
Target Start/End: Complemental strand, 28787327 - 28787276
Alignment:
Q  10 gagttaatccctaaccctaattgcagcaagggcccactttttgcttaatctc 61  Q
    ||||||||||||||||||||||||| ||||||||||| || |||||||||||    
T  28787327 gagttaatccctaaccctaattgcatcaagggcccacattatgcttaatctc 28787276  T

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Target: chr5 (Bit Score: 107; Significance: 1e-53; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 6 - 256
Target Start/End: Original strand, 16683630 - 16683885
Alignment:
Q  6 attagagttaatccctaaccctaattgcagcaagggcccactttttgcttaatctccttccactaaaccctgttttggtgccttgcacaatt---cctaa 102  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||| ||||||||||| |||||||||||||    ||||    
T  16683630 attagagttaatccctaaccctaattgcagcaagggcccactttatgcttaacctccttccactaatccctgttttggcgccttgcacaatttggtctaa 16683729  T
Q  103 tcaccaaagtgtctgtattaaatgagaatgtggtagggacacacaatttattagcaagcaaacaagtctttaatgattcagggtt--atgtagtgcttgg 200  Q
    ||||| || || ||||||||||||| |||||| ||||||| ||| || |||||||||||||||| ||||||||| ||||     |  ||||| ||||| |    
T  16683730 tcacctaactgcctgtattaaatgataatgtgttagggacccacgatgtattagcaagcaaacaggtctttaattattctaccatccatgtaatgcttag 16683829  T
Q  201 gaaaaaatgcagccattattttgaatataaccaatgcagactatctgcatacccta 256  Q
    |||||||||||||| || ||||   | ||||||||||| ||||| ||||| |||||    
T  16683830 gaaaaaatgcagccgtttttttatgtgtaaccaatgcaaactatttgcatgcccta 16683885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0129 (Bit Score: 91; Significance: 4e-44; HSPs: 2)
Name: scaffold0129
Description:

Target: scaffold0129; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 6 - 141
Target Start/End: Original strand, 29224 - 29361
Alignment:
Q  6 attagagttaatccctaaccctaattgcagcaagggcccactttttgcttaatctccttccactaaaccctgttttggtgccttgcacaatt--cctaat 103  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||| |||||| |||||||||||||   |||||    
T  29224 attagagttaatccctaaccctaattgcagcaagggcccactttatgcttaatctccttccactaatcccttttttggcgccttgcacaattgctctaat 29323  T
Q  104 caccaaagtgtctgtattaaatgagaatgtggtaggga 141  Q
    |||| || ||| ||||||||||||||||||| ||||||    
T  29324 cacccaactgtatgtattaaatgagaatgtgttaggga 29361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0129; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 6 - 141
Target Start/End: Original strand, 29017 - 29153
Alignment:
Q  6 attagagttaatccctaaccctaattgcagcaagggcccactttttgcttaatctccttccactaaaccctgttttggtgccttgcacaatt--cctaat 103  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| || |||| |||||| |||||||||||||   |||||    
T  29017 attagagttaatccctaaccctaattgcagcaagggcccactttatgcttaatctccttccac-aatcccttttttggcgccttgcacaattgctctaat 29115  T
Q  104 caccaaagtgtctgtattaaatgagaatgtggtaggga 141  Q
    |||| || ||| ||||||||||||||||||| ||||||    
T  29116 cacccaactgtatgtattaaatgagaatgtgttaggga 29153  T

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Target: chr1 (Bit Score: 91; Significance: 4e-44; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 14 - 256
Target Start/End: Complemental strand, 21680374 - 21680130
Alignment:
Q  14 taatccctaaccctaattgcagcaagggcccactttttgcttaatctccttccactaaaccctgttttggtgcct-tgcacaattcctaatcaccaaagt 112  Q
    ||||||||||||||||||||||||||||||||||||||| |||| || || ||||||||||||  ||||| ||||   ||||||||||||||||| || |    
T  21680374 taatccctaaccctaattgcagcaagggcccactttttgattaaactactgccactaaacccttatttggcgcctaaccacaattcctaatcacccaact 21680275  T
Q  113 gtctgtattaaatga-gaatgtggtagggacacacaatttattagcaagcaaacaagtctttaatgattcagggtt--atgtagtgcttggg-aaaaaat 208  Q
     | |||||||||||| |  | ||||||||||||||||| ||| ||||||||||||| |||||||||| ||||||||  || | || |||||| ||||||     
T  21680274 ctgtgtattaaatgagggttatggtagggacacacaatgtatcagcaagcaaacaactctttaatgactcagggttcaatttggttcttgggaaaaaaaa 21680175  T
Q  209 gcagccattattttgaatataaccaatgcagactatctgcatacccta 256  Q
    || ||| || |||||   ||||||||||||||||||||||||||||||    
T  21680174 gccgccgtttttttg---ataaccaatgcagactatctgcatacccta 21680130  T

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Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 10 - 61
Target Start/End: Complemental strand, 18851592 - 18851541
Alignment:
Q  10 gagttaatccctaaccctaattgcagcaagggcccactttttgcttaatctc 61  Q
    ||||||||||||||||||||||||| ||||||||||| || |||||||||||    
T  18851592 gagttaatccctaaccctaattgcatcaagggcccacattatgcttaatctc 18851541  T

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Target: chr4 (Bit Score: 88; Significance: 2e-42; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 6 - 176
Target Start/End: Original strand, 38641289 - 38641462
Alignment:
Q  6 attagagttaatccctaaccctaattgcagcaagggcccactttttgcttaatctccttccactaaaccctgttttggtgccttgcacaatt---cctaa 102  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||| |||| |||||  |||||||||||||    ||||    
T  38641289 attagagttaatccctaaccctaattgcagcaagggcccactttatgcttaacctccttccactaatcccttttttgacgccttgcacaatttgctctaa 38641388  T
Q  103 tcaccaaagtgtctgtattaaatgagaatgtggtagggacacacaatttattagcaagcaaacaagtctttaat 176  Q
    ||||| || || || || ||||||| |||||| ||||||| ||| || |||||||||||||||| |||||||||    
T  38641389 tcacctaactgcctatactaaatgataatgtgttagggacccacgatgtattagcaagcaaacaggtctttaat 38641462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 10 - 61
Target Start/End: Original strand, 16639676 - 16639727
Alignment:
Q  10 gagttaatccctaaccctaattgcagcaagggcccactttttgcttaatctc 61  Q
    ||||||||||||||||||||||||| ||||||||||| || |||||||||||    
T  16639676 gagttaatccctaaccctaattgcatcaagggcccacattatgcttaatctc 16639727  T

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Target: chr7 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 10 - 92
Target Start/End: Complemental strand, 7619640 - 7619558
Alignment:
Q  10 gagttaatccctaaccctaattgcagcaagggcccactttttgcttaatctccttccactaaaccctgttttggtgccttgca 92  Q
    |||||||||| ||||||||| |||||||||||||||| || ||||||||||| ||   |||||||||||||||| ||||||||    
T  7619640 gagttaatccttaaccctaactgcagcaagggcccacattatgcttaatctcttttgcctaaaccctgttttggcgccttgca 7619558  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 14 - 59
Target Start/End: Complemental strand, 29129254 - 29129209
Alignment:
Q  14 taatccctaaccctaattgcagcaagggcccactttttgcttaatc 59  Q
    |||||||||||| ||||||||||||| ||||||||| |||||||||    
T  29129254 taatccctaaccttaattgcagcaagagcccactttatgcttaatc 29129209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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