View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2932_high_40 (Length: 260)

Name: NF2932_high_40
Description: NF2932
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2932_high_40
NF2932_high_40
[»] chr8 (2 HSPs)
chr8 (3-152)||(9487760-9487925)
chr8 (4-53)||(6414702-6414751)
[»] chr4 (2 HSPs)
chr4 (1-152)||(25170183-25170344)
chr4 (57-111)||(32347634-32347688)
[»] chr5 (4 HSPs)
chr5 (1-153)||(17156567-17156734)
chr5 (57-135)||(31000655-31000734)
chr5 (1-49)||(38550069-38550117)
chr5 (57-97)||(38550141-38550181)
[»] chr7 (1 HSPs)
chr7 (63-152)||(30380583-30380674)
[»] chr6 (1 HSPs)
chr6 (57-152)||(11186890-11186987)
[»] scaffold0019 (1 HSPs)
scaffold0019 (16-53)||(59489-59526)


Alignment Details
Target: chr8 (Bit Score: 72; Significance: 8e-33; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 3 - 152
Target Start/End: Complemental strand, 9487925 - 9487760
Alignment:
Q  3 ctatgaattgtgtaatctcattaagacttgaagtttcaaaatacaaagcct--------------ataacttgtttgtagaacaagctatctaactaatt 88  Q
    |||||||||||||| ||||||||||||||||||||||| ||||||||||||              || ||||| |||||||||||||||||||||||| |    
T  9487925 ctatgaattgtgtactctcattaagacttgaagtttcacaatacaaagccttttatagacacaatattacttgcttgtagaacaagctatctaactaact 9487826  T
Q  89 aacaaattttgaaacaaacttaactaa--ttttgttacaaggcagttattgattaatattctaata 152  Q
    |||||||||||||| |||| |||||||  ||| |||||||| ||||||||||||||||||||||||    
T  9487825 aacaaattttgaaataaacataactaacttttagttacaagccagttattgattaatattctaata 9487760  T

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Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 4 - 53
Target Start/End: Complemental strand, 6414751 - 6414702
Alignment:
Q  4 tatgaattgtgtaatctcattaagacttgaagtttcaaaatacaaagcct 53  Q
    |||||| |||||||||||||||||||||||||||||| ||||||||||||    
T  6414751 tatgaactgtgtaatctcattaagacttgaagtttcacaatacaaagcct 6414702  T

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Target: chr4 (Bit Score: 70; Significance: 1e-31; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 152
Target Start/End: Complemental strand, 25170344 - 25170183
Alignment:
Q  1 tgctatgaattgtgtaatctcattaagacttgaagtttcaaaatacaaagcct--------------ataacttgtttgtagaacaagctatctaactaa 86  Q
    ||||||||||| |||||||||||||||||||||||||||| ||||||||||||              || ||||| ||||||||||| ||||||||||||    
T  25170344 tgctatgaattctgtaatctcattaagacttgaagtttcacaatacaaagccttttataggcacaatatcacttgcttgtagaacaatctatctaactaa 25170245  T
Q  87 ttaacaaattttgaaacaaacttaactaattttgttacaaggcagttattgattaatattctaata 152  Q
        ||||||||||||||||||||||||| |||||||||||  |||||||||||||||||||||||    
T  25170244 ----caaattttgaaacaaacttaactaactttgttacaagatagttattgattaatattctaata 25170183  T

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Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 57 - 111
Target Start/End: Original strand, 32347634 - 32347688
Alignment:
Q  57 acttgtttgtagaacaagctatctaactaattaacaaattttgaaacaaacttaa 111  Q
    ||||| |||||||||||||||||||||||| ||||||||||||||||||| ||||    
T  32347634 acttgcttgtagaacaagctatctaactaactaacaaattttgaaacaaatttaa 32347688  T

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Target: chr5 (Bit Score: 60; Significance: 1e-25; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 153
Target Start/End: Original strand, 17156567 - 17156734
Alignment:
Q  1 tgctatgaattgtgtaatctcattaagacttgaagtttcaaaatacaaagcct------------ata--acttgtttgtagaacaagctatctaactaa 86  Q
    ||||||||||| ||||||||||||||||| |||| ||||| ||||||||||||            |||  ||||| ||||||||||| ||||||||||||    
T  17156567 tgctatgaattatgtaatctcattaagacatgaaatttcacaatacaaagccttttataggcacaatagcacttgcttgtagaacaaactatctaactaa 17156666  T
Q  87 ttaacaaatttt-gaaacaaacttaactaattttgttacaaggcagttattgattaatattctaataa 153  Q
     || |||||||| ||||||||||||| |||  ||||||||||||| ||||||||||||||||||||||    
T  17156667 gtagcaaatttttgaaacaaacttaattaaccttgttacaaggcatttattgattaatattctaataa 17156734  T

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Target: chr5; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 57 - 135
Target Start/End: Complemental strand, 31000734 - 31000655
Alignment:
Q  57 acttgtttgtagaacaagctatctaactaattaacaaattttgaaacaaact-taactaattttgttacaaggcagttat 135  Q
    ||||| ||||||||||||||| ||||| || ||||||| ||||||||||| | ||||||| |||||||||||||||||||    
T  31000734 acttgcttgtagaacaagctagctaaccaactaacaaactttgaaacaaaatctaactaactttgttacaaggcagttat 31000655  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 38550069 - 38550117
Alignment:
Q  1 tgctatgaattgtgtaatctcattaagacttgaagtttcaaaatacaaa 49  Q
    ||||||||||| ||||||||| |||||| ||| ||||||| ||||||||    
T  38550069 tgctatgaattttgtaatctccttaagatttggagtttcacaatacaaa 38550117  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 57 - 97
Target Start/End: Original strand, 38550141 - 38550181
Alignment:
Q  57 acttgtttgtagaacaagctatctaactaattaacaaattt 97  Q
    ||||| ||||||||||||||||| |||||| ||||||||||    
T  38550141 acttggttgtagaacaagctatccaactaactaacaaattt 38550181  T

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Target: chr7 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 63 - 152
Target Start/End: Complemental strand, 30380674 - 30380583
Alignment:
Q  63 ttgtagaacaagctatctaactaattaacaaattttgaaacaaacttaactaa--ttttgttacaaggcagttattgattaatattctaata 152  Q
    |||| |||||||  |||||||||| ||| | ||||||||||||||||||||||   || |||||| |||| |||||||||||||||||||||    
T  30380674 ttgtggaacaagtaatctaactaactaatagattttgaaacaaacttaactaactattagttacatggcaattattgattaatattctaata 30380583  T

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Target: chr6 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 57 - 152
Target Start/End: Original strand, 11186890 - 11186987
Alignment:
Q  57 acttgtttgtagaacaagctatctaactaattaacaaattttgaaacaaacttaactaatttt--gttacaaggcagttattgattaatattctaata 152  Q
    ||||| ||||||| ||||  |||| ||||| ||  | |||||||||||||||||||||| | |  |||||| |||||||||||||||| |||||||||    
T  11186890 acttgcttgtagagcaagtaatctcactaactattagattttgaaacaaacttaactaactattagttacatggcagttattgattaagattctaata 11186987  T

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Target: scaffold0019 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 16 - 53
Target Start/End: Original strand, 59489 - 59526
Alignment:
Q  16 aatctcattaagacttgaagtttcaaaatacaaagcct 53  Q
    |||||||||||||||||||||| || ||||||||||||    
T  59489 aatctcattaagacttgaagttgcacaatacaaagcct 59526  T

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