View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2932_high_41 (Length: 258)
Name: NF2932_high_41
Description: NF2932
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2932_high_41 |
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Alignment Details
Target: chr5 (Bit Score: 241; Significance: 1e-133; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 1 - 257
Target Start/End: Original strand, 15429555 - 15429811
Alignment:
| Q |
1 |
atccttttttcaagattttgagagagatgtatttggcgaaattataagtttcaagatgcacgatcttgttcatgatctcgctcagtcaatttcagaagag |
100 |
Q |
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| T |
15429555 |
atccttttttcaagattttgagagagatgtatttggcgaaattataagtttcaagatgcacgatcttgttcatgatctcgctcagtcaatttcagaagag |
15429654 |
T |
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| Q |
101 |
gtgtgtttctttacaaaaatcgatgacatgcctagtacattagaaagaatccgccatctctcatttgcagagaatattccagaaagtgcagtttcaattt |
200 |
Q |
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| T |
15429655 |
gtgtgtttctttacaaaaatcgatgacatgcctagtacattagaaagaatccgccatctctcatttgccgagaatattcctgaaagtgcagtttcaattt |
15429754 |
T |
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| Q |
201 |
tcatgcgtaacatcaaatcaccgaggacctgctacacaagttcctttgattctgctc |
257 |
Q |
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| T |
15429755 |
tcatgcgtaacatcaaatcaccgaggacctgctacacaagttcatttgattttgctc |
15429811 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 5 - 240
Target Start/End: Original strand, 15421683 - 15421918
Alignment:
| Q |
5 |
ttttttcaagattttgagagagatgtatttggcgaaattataagtttcaagatgcacgatcttgttcatgatctcgctcagtcaatttcagaagaggtgt |
104 |
Q |
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| T |
15421683 |
ttttttcaagattttgagagagatgtatttggtgaaattataagtttcaagatgcacgatcttgttcatgatctcgctcggtcaatttcagaagaggtgt |
15421782 |
T |
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| Q |
105 |
gtttctttacaaaaatcgatgacatgcctagtacattagaaagaatccgccatctctcatttgcagagaatattccagaaagtgcagtttcaattttcat |
204 |
Q |
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| T |
15421783 |
gttgcattatgaaaatcaatgacaggcctagtacattagaaagaatacgccatctctcaattgaaatgaatattccagcaagtttagtttcaatttggat |
15421882 |
T |
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| Q |
205 |
gcgtaacatcaaatcaccgaggacctgctacacaag |
240 |
Q |
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| T |
15421883 |
gcgtaacatcaaatcatcgaggaccttctacacaag |
15421918 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 5 - 167
Target Start/End: Complemental strand, 15083095 - 15082933
Alignment:
| Q |
5 |
ttttttcaagattttgagagagatgtatttggcgaaattataagtttcaagatgcacgatcttgttcatgatctcgctcagtcaatttcagaagaggtgt |
104 |
Q |
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| T |
15083095 |
ttttttcaagatattgagacagatgtatttggcaaaattacaagtttcaagatgcacgatcttgttcacgatcttgctcaatcaatttcagatgaggtgt |
15082996 |
T |
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| Q |
105 |
gtttctttacaaaaatcgatgacatgcctagtacattagaaagaatccgccatctctcatttg |
167 |
Q |
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| T |
15082995 |
gttgcattacaagaaatgatgacatgcctagtacatttgaaagaatccgccatctctcatttg |
15082933 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 5 - 66
Target Start/End: Complemental strand, 15331322 - 15331261
Alignment:
| Q |
5 |
ttttttcaagattttgagagagatgtatttggcgaaattataagtttcaagatgcacgatct |
66 |
Q |
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||||| |||||| |||||| |||| |||||||| |||||| ||||||||||||||| ||||| |
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| T |
15331322 |
tttttccaagatattgagacagatatatttggcaaaattacaagtttcaagatgcatgatct |
15331261 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 49 - 90
Target Start/End: Complemental strand, 29872343 - 29872302
Alignment:
| Q |
49 |
tttcaagatgcacgatcttgttcatgatctcgctcagtcaat |
90 |
Q |
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| T |
29872343 |
tttcaagatgcatgatcttgtccatgatctcgctcaatcaat |
29872302 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 25 - 107
Target Start/End: Complemental strand, 8187227 - 8187145
Alignment:
| Q |
25 |
agatgtatttggcgaaattataagtttcaagatgcacgatcttgttcatgatctcgctcagtcaatttcagaagaggtgtgtt |
107 |
Q |
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||||| |||||| |||||||| |||||||||||| |||||||| |||||||| ||||| || || ||||||||||| |||| |
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| T |
8187227 |
agatgaatttggaaaaattatatatttcaagatgcatgatcttgtacatgatcttgctcaatctatatcagaagaggtttgtt |
8187145 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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