View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2932_high_47 (Length: 247)
Name: NF2932_high_47
Description: NF2932
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2932_high_47 |
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Alignment Details
Target: chr4 (Bit Score: 179; Significance: 1e-96; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 1 - 235
Target Start/End: Original strand, 43539237 - 43539470
Alignment:
| Q |
1 |
cctggtgctaggatttttcttgtccatgtttctcctccaattacattgattcctacgccaggtatcacctaatcttgggtaactagtgataagacttggn |
100 |
Q |
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| T |
43539237 |
cctggtgctaggatttttcttgtccatgtttctcctccaattacattgattcctacgccaggtatcacctaatcttgggtaactagtgataagacttgga |
43539336 |
T |
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| Q |
101 |
nnnnnnnnttatatagagcaacacccggaggccatgaaacacgaacaccgacacatataattacattgaaattaaattatgtgattttcttaaattagtt |
200 |
Q |
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| T |
43539337 |
aaaaaaa-ttatatagagcaatacccgtaggccatgaaacacgaacaccgacacatatagttacattgaaattgaattatgtgatttttttaaattagtt |
43539435 |
T |
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| Q |
201 |
atcggtgattgcgtgttggtgtccaatatccttgt |
235 |
Q |
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|||||||| |||||||||||||||||||||||||| |
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| T |
43539436 |
atcggtgactgcgtgttggtgtccaatatccttgt |
43539470 |
T |
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