View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2932_high_5 (Length: 635)
Name: NF2932_high_5
Description: NF2932
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2932_high_5 |
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Alignment Details
Target: chr1 (Bit Score: 516; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 516; E-Value: 0
Query Start/End: Original strand, 1 - 616
Target Start/End: Original strand, 49414972 - 49415593
Alignment:
| Q |
1 |
atataatactgtaaaaattaaagatatcaatatcaatttgttttcaaaaattgtttaaaataatcctatgaaatgatagctcgtctagcaatacagtgca |
100 |
Q |
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| T |
49414972 |
atataatactgtaaaaattaaagatatcaatatcaatttgttttcaaaaattgtttaaaataatcctatgaaatgatagctcgtctagcaatacagtgca |
49415071 |
T |
|
| Q |
101 |
accaactgactaacacatttgacaataacaagatatggtagcatgtgtggtcgtcgcacgtttatctattaatcacaggtgattgtcctctnnnnnnnn- |
199 |
Q |
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| T |
49415072 |
accaactgactaacacatttgacaataacaagatatggtagcatgtgtggtcgtcgcacgtttatctattaatcacaggtgattgtcctctaaaaaaaaa |
49415171 |
T |
|
| Q |
200 |
-tcacaggtgattgtgcgcaattttgcatcagcattacctcataattatgtcatgagggttttgaacaattataaga---ctcacgtaatcatgtgctaa |
295 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
49415172 |
atcacaggtgattgtgcgcaattttgcatcagcattacctcataattatgtcatgagggttttgaacaattataagaagactcacgtaatcatgtgctaa |
49415271 |
T |
|
| Q |
296 |
ttgnnnnnnnaggaaataataaacacattgcatttcaatcaaatccaagatacaagggg-tacatcaatgaaaatatagaaactagtagttaagaataag |
394 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||| |
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| T |
49415272 |
ttgtttttttaggaaataataaacacattgcatttcaatcaaatccaagatacaagggggtacatcaatgaaaatatagaaaatagtagttaagaataag |
49415371 |
T |
|
| Q |
395 |
atatctcttgcaagagtatgaactatctcacttgtttgtctctaattaaactcaatccgagagttttcaaaaaataaatgacaacatcgtttatattcat |
494 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
49415372 |
gtatctcttgcaagagtatgaactatctcacttgtttgtctttaattaaactcaatccgagagttttcaaaaaataagtgacaacatcgtttatattcat |
49415471 |
T |
|
| Q |
495 |
aaaaattgctccaaattccaaaatgccattcttaccttcattgtaatgatttactgctctcttgcgtcaagttcaaaatcaaatttaaaagtcgtagatc |
594 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
49415472 |
aaaaattgctccaaattccaaaatgtcattcttaccttcattgtaatgatttactgctctcttgcgtcaagttcaaaatcaaatttgaaagtcgtagatc |
49415571 |
T |
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| Q |
595 |
atgcacaaagggtagtgcatgt |
616 |
Q |
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| T |
49415572 |
atgcacaaagggtaatgcatgt |
49415593 |
T |
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