View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2932_high_56 (Length: 238)
Name: NF2932_high_56
Description: NF2932
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2932_high_56 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 18 - 238
Target Start/End: Complemental strand, 35520961 - 35520741
Alignment:
| Q |
18 |
catactctactaatttctttttgttttcacaagcattcacccttatatgcccattttcttcacaacagtacaagtttttaggtgaaaactgaaccaactt |
117 |
Q |
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| T |
35520961 |
catactctactaatttcttcttgttttcgcaagcattcacccttatatgcccattttcttcacaacagtacaagtttttaggtgaaaactgaaccaactt |
35520862 |
T |
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| Q |
118 |
gaaagacaaagcattgaaccagaatattgttcccattttatccacaacataaagttgtcccttgtaaagtattatatcatcaaaacaatgggtttctcca |
217 |
Q |
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| T |
35520861 |
gaaagacaaagcatggaaccagaatattgttcccattttatccacaacataaagttggcccttgtaaagtatcatatcatcaaaacaatgggtttctcca |
35520762 |
T |
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| Q |
218 |
tcatcgtcctctaacatggta |
238 |
Q |
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| T |
35520761 |
ccatcgtcctctaacatggta |
35520741 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 93; Significance: 2e-45; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 18 - 202
Target Start/End: Original strand, 38813404 - 38813588
Alignment:
| Q |
18 |
catactctactaatttctttttgttttcacaagcattcacccttatatgcccattttcttcacaacagtacaagtttttaggtgaaaactgaaccaactt |
117 |
Q |
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| T |
38813404 |
catactctactaattgcttcttgtttatgttagaattcacccttatatgcctattttcagcacaatggtacatgttttttggtgaaaattgaaccaactt |
38813503 |
T |
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| Q |
118 |
gaaagacaaagcattgaaccagaatattgttcccattttatccacaacataaagttgtcccttgtaaagtattatatcatcaaaa |
202 |
Q |
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| T |
38813504 |
caaggaaagagcattgatccagaaaattgttcccattttatccacaacataaagttgtcccttgtaatgtattatatcatcaaaa |
38813588 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 53 - 202
Target Start/End: Original strand, 38810754 - 38810903
Alignment:
| Q |
53 |
ttcacccttatatgcccattttcttcacaacagtacaagtttttaggtgaaaactgaaccaacttgaaagacaaagcattgaaccagaatattgttccca |
152 |
Q |
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| T |
38810754 |
ttcacccttatatgcctctttttgtcacaacaggacaagttttttggtgaaaattgaaccaacttcaaggacaaagcatttatctagaaaattgttcatt |
38810853 |
T |
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| Q |
153 |
ttttatccacaacataaagttgtcccttgtaaagtattatatcatcaaaa |
202 |
Q |
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| T |
38810854 |
tatcatccataacataaagttgtccattataaagtattatatcataaaaa |
38810903 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 89 - 202
Target Start/End: Original strand, 38825373 - 38825481
Alignment:
| Q |
89 |
aagtttttaggtgaaaactgaaccaacttgaaagacaaagcattg---aaccagaatattgttcccattttatccacaacataaagttgtcccttgtaaa |
185 |
Q |
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| T |
38825373 |
aagttttttggtgaaaactgaaccaactttaaggataaagcattatttatccagaaaattgttcccattttatccacaaca--------tcccttgtaaa |
38825464 |
T |
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| Q |
186 |
gtattatatcatcaaaa |
202 |
Q |
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| T |
38825465 |
gtattatatcatcaaaa |
38825481 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 77 - 199
Target Start/End: Original strand, 35548754 - 35548873
Alignment:
| Q |
77 |
tcacaacagtacaagtttttaggtgaaaactgaaccaacttgaaagacaaagcattgaaccagaatattgttcccattttatccacaacataaagttgtc |
176 |
Q |
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| T |
35548754 |
tcacaacagtacaacttt---ggtgaaaactgaaccaacttcaaagtcaaaggattgatccagaaaattgtcccgttttcatccacaacataaagttgtt |
35548850 |
T |
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| Q |
177 |
ccttgtaaagtattatatcatca |
199 |
Q |
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| T |
35548851 |
ccctgtgaagaattatatcatca |
35548873 |
T |
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