View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2932_high_7 (Length: 561)
Name: NF2932_high_7
Description: NF2932
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2932_high_7 |
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Alignment Details
Target: chr7 (Bit Score: 431; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 431; E-Value: 0
Query Start/End: Original strand, 1 - 543
Target Start/End: Complemental strand, 17860407 - 17859850
Alignment:
| Q |
1 |
tacaacaagtattggggtaaaattgaaaacatcaacaagcttatttactttggtgtgattcttgaccctcgatacaagtttagctatgtggagtggtgct |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17860407 |
tacaacaagtattggggtaaaattgaaaacatcaacaagcttatttactttggtgtgattcttgaccctcgatacaagtttagctatgtggagtggtgct |
17860308 |
T |
|
| Q |
101 |
tcaatgacatgtatggtgaccaacctacattttttactgatctgattgttgtgatccatactcagctgttcaaactgttcaattggtacaaggatgccta |
200 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17860307 |
tcaatgacatgtatggtgaccaacctacattttttactgatctgattgctgtgatccatactcagctgttcaaactgttcaattggtacaaggatgccta |
17860208 |
T |
|
| Q |
201 |
tgaccaacatcataattctggtcatccatctgcaactccatccgagtctagttatgttagcgtgaatgtgatcctagctgaagtcccatctcatttggca |
300 |
Q |
| |
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|||||| || ||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||| |
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| T |
17860207 |
tgaccagcaacataattctggtcatccatctgcaagtccatccgagtctagttatgttagcgagaatgtgatcccagctgaagtcccatctcatttggca |
17860108 |
T |
|
| Q |
301 |
agggctaaagcttttaaggagcaccttaaactgaaggaatcaatagttnnnnnnnttgagct---------------tgcggagcatgcggaggatgtca |
385 |
Q |
| |
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|||||| |||||||||||||||| |||||||||||||||||||||||| |||||| || ||||| |||||||||||||| |
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| T |
17860107 |
agggctgaagcttttaaggagcatcttaaactgaaggaatcaatagttaaaaaaaatgagcttgaaaggtacctagatgaggagcgtgcggaggatgtca |
17860008 |
T |
|
| Q |
386 |
actttgacatccttgtttggtggaaacaaaactcttgtcgttatcctgttttgtcatccatggtgagggatgttttagctacaccagtttcaactgtggc |
485 |
Q |
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||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17860007 |
actttgagatccttctttggtggaaacaaaactcttgtcgttatcctgttttgtcatccatggtgagggatgttttagctacaccagtttcaactgtggc |
17859908 |
T |
|
| Q |
486 |
ttctgaaagtgcctttagtactggaggaagagttttagatacatatagaagttcattg |
543 |
Q |
| |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
17859907 |
ttctgaaagtgcctttagcactggaggaagagttttagatacatatagaagttcattg |
17859850 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 427; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 427; E-Value: 0
Query Start/End: Original strand, 1 - 543
Target Start/End: Original strand, 34915405 - 34915962
Alignment:
| Q |
1 |
tacaacaagtattggggtaaaattgaaaacatcaacaagcttatttactttggtgtgattcttgaccctcgatacaagtttagctatgtggagtggtgct |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34915405 |
tacaacaagtattggggtaaaattgaaaacatcaacaagcttatttactttggtgtgattcttgaccctcgatacaagtttagctatgtggagtggtgct |
34915504 |
T |
|
| Q |
101 |
tcaatgacatgtatggtgaccaacctacattttttactgatctgattgttgtgatccatactcagctgttcaaactgttcaattggtacaaggatgccta |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34915505 |
tcaatgacatgtatggtgaccaacctacattttttactgatctgattgctatgatccatactcagctgttcaaactgttcaattggtacaaggatgccta |
34915604 |
T |
|
| Q |
201 |
tgaccaacatcataattctggtcatccatctgcaactccatccgagtctagttatgttagcgtgaatgtgatcctagctgaagtcccatctcatttggca |
300 |
Q |
| |
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|||||| || ||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||| |
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| T |
34915605 |
tgaccagcaacataattctggtcatccatctgcaagtccatccgagtctagttatgttagcgagaatgtgatcccagctgaagtcccatctcatttggca |
34915704 |
T |
|
| Q |
301 |
agggctaaagcttttaaggagcaccttaaactgaaggaatcaatagttnnnnnnnttgagct---------------tgcggagcatgcggaggatgtca |
385 |
Q |
| |
|
|||||| |||||||||||||||| |||||||||||||||||||||||| |||||| || ||||| |||||||||||||| |
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| T |
34915705 |
agggctgaagcttttaaggagcatcttaaactgaaggaatcaatagttaaaaaaaatgagcttgaaaggtacctagatgaggagcgtgcggaggatgtca |
34915804 |
T |
|
| Q |
386 |
actttgacatccttgtttggtggaaacaaaactcttgtcgttatcctgttttgtcatccatggtgagggatgttttagctacaccagtttcaactgtggc |
485 |
Q |
| |
|
|||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34915805 |
actttgacatccttctttcgtggaaacaaaactcttgtcgttatcctgttttgtcatccatggtgagggatgttttagctacaccagtttcaactgtggc |
34915904 |
T |
|
| Q |
486 |
ttctgaaagtgcctttagtactggaggaagagttttagatacatatagaagttcattg |
543 |
Q |
| |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
34915905 |
ttctgaaagtgcctttagcactggaggaagagttttagatacatatagaagttcattg |
34915962 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 419; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 419; E-Value: 0
Query Start/End: Original strand, 1 - 543
Target Start/End: Complemental strand, 4968938 - 4968381
Alignment:
| Q |
1 |
tacaacaagtattggggtaaaattgaaaacatcaacaagcttatttactttggtgtgattcttgaccctcgatacaagtttagctatgtggagtggtgct |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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|
| T |
4968938 |
tacaacaagtattggggtaaaattgaaaacatcaacaagcttatttactttggtgtgattcttgaccctcgatacaagtttagttatgtggagtggtgct |
4968839 |
T |
|
| Q |
101 |
tcaatgacatgtatggtgaccaacctacattttttactgatctgattgttgtgatccatactcagctgttcaaactgttcaattggtacaaggatgccta |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
4968838 |
tcaatgacatgtatggtgaccaacctacattttttactgatctgattgctgtgatccatactcagctattcaaactgttcaattggtacaaggatgccta |
4968739 |
T |
|
| Q |
201 |
tgaccaacatcataattctggtcatccatctgcaactccatccgagtctagttatgttagcgtgaatgtgatcctagctgaagtcccatctcatttggca |
300 |
Q |
| |
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|||||| || ||||||||||||||||| ||||||| |||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||| |
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| T |
4968738 |
tgaccagcaacataattctggtcatccgtctgcaagtccatccgagtctagttatgttagcgagaatgtgatcccagctgaagtcccatctcatttggca |
4968639 |
T |
|
| Q |
301 |
agggctaaagcttttaaggagcaccttaaactgaaggaatcaatagttnnnnnnnttgagct---------------tgcggagcatgcggaggatgtca |
385 |
Q |
| |
|
|||||| |||||||||||||||| |||||||||||||||||||||||| |||||| || ||||| |||||||||||||| |
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|
| T |
4968638 |
agggctgaagcttttaaggagcatcttaaactgaaggaatcaatagttaaaaaaaatgagcttgaaaggtacctagatgaggagcgtgcggaggatgtca |
4968539 |
T |
|
| Q |
386 |
actttgacatccttgtttggtggaaacaaaactcttgtcgttatcctgttttgtcatccatggtgagggatgttttagctacaccagtttcaactgtggc |
485 |
Q |
| |
|
||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
4968538 |
actttgagatccttctttggtggaaacaaaactcttgtcgttatcctgttttgtcatccatggtgagggatgttttagctacaccagtttcaactgtggc |
4968439 |
T |
|
| Q |
486 |
ttctgaaagtgcctttagtactggaggaagagttttagatacatatagaagttcattg |
543 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4968438 |
ttctgaaagtgcctttagcactggaggaagagttttagatacatatagaagttcattg |
4968381 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 475 - 539
Target Start/End: Complemental strand, 14593183 - 14593119
Alignment:
| Q |
475 |
tcaactgtggcttctgaaagtgcctttagtactggaggaagagttttagatacatatagaagttc |
539 |
Q |
| |
|
|||||||| ||||||||||| || ||||| |||||||||||||||||||| |||||||| ||||| |
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|
| T |
14593183 |
tcaactgttgcttctgaaagcgcatttagcactggaggaagagttttagacacatataggagttc |
14593119 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 475 - 533
Target Start/End: Original strand, 13308386 - 13308444
Alignment:
| Q |
475 |
tcaactgtggcttctgaaagtgcctttagtactggaggaagagttttagatacatatag |
533 |
Q |
| |
|
|||||||| ||||||||||| | ||||| |||||||||||||||||||| |||||||| |
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|
| T |
13308386 |
tcaactgttgcttctgaaagcacatttagcactggaggaagagttttagacacatatag |
13308444 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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