View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2932_high_8 (Length: 556)
Name: NF2932_high_8
Description: NF2932
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2932_high_8 |
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Alignment Details
Target: chr7 (Bit Score: 430; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 430; E-Value: 0
Query Start/End: Original strand, 82 - 542
Target Start/End: Original strand, 4488186 - 4488647
Alignment:
| Q |
82 |
tatttgaggaagaatccagtttgatcttagcactattgatgataataaatctttattagtcaaggtaaatgctaaaatgattttgctgtcattatagaag |
181 |
Q |
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||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4488186 |
tatttgaggaagaatccagtttgattttagcactattggtgataataaatctttattagtcaaggtaaatgctaaaatgattttgctgtcattatagaag |
4488285 |
T |
|
| Q |
182 |
taccttttaaataagccacccattgaagctccaacgaccaatttcgttatagcatacttcattacttcctctgccactgcagatgccacatcatctgatt |
281 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
4488286 |
taccttttaaataagccacccattgaagctccaacgaccaatttcgttatagcatacttcatcacttcctctgccactgcagatgccacatcatctgatt |
4488385 |
T |
|
| Q |
282 |
caatcactacaacttctacatgcacctgtttcaacaatagtataagaatgcagttcctatagtgcactatttgttcaaattaatattcatgaagaacaat |
381 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4488386 |
caatcactacaacttctacatgcacctgtttcaacaatagtataagaatgcagttcctatagtgcactatttgttcaaattaatattcatgaagaacaat |
4488485 |
T |
|
| Q |
382 |
atcttacctttctctgctcacacattttc-taaaaagtagaaacatttgatttgtctccaactctatttcctttttgtacgtagctgcaacatcgtcaca |
480 |
Q |
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||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| |
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| T |
4488486 |
atcttacctttctctgctcacacattttcttaaaaggtagaaacatttgatttgtctccaactctatttcctttttgtatgtagctgcaacatcatcaca |
4488585 |
T |
|
| Q |
481 |
cacttgtgaaattgggagaaaatttcccactgcaagtacaaaaatgttgaattatcataact |
542 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4488586 |
cacttgtgaaattgggagaaaatttcccactgcaagtacaaaaatgttgaattatcataact |
4488647 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 283; Significance: 1e-158; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 180 - 541
Target Start/End: Original strand, 1409606 - 1409968
Alignment:
| Q |
180 |
agtaccttttaaataagccacccattgaagctccaacgaccaatttcgttatagcatacttcattacttcctctgccactgcagatgccacatcatctga |
279 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||| |||||||||||||||| |||||||||||||||||||| |
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| T |
1409606 |
agtaccttttaaataagccaccggttgaagctccaacgaccaatttcgttacagcatacttggttacttcctctgccaccgcagatgccacatcatctga |
1409705 |
T |
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| Q |
280 |
ttcaatcactacaacttctacatgcacctgtttcaacaatagtataagaatgcagttcctatagtgcactatttgttcaaattaatattcatgaagaaca |
379 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
1409706 |
ttcaatcactacaacttctacatgcacctgtttcaacaatagtataagaatgcagttcctatagtgcactatttgttcaaattaatcttcatgaagaaca |
1409805 |
T |
|
| Q |
380 |
atatcttacctttctctgctcacacattttc-taaaaagtagaaacatttgatttgtctccaactctatttcctttttgtacgtagctgcaacatcgtca |
478 |
Q |
| |
|
||||||||||||||||||||||||||||| | ||||| |||||| ||||||||||||||| |||||||||| |||||||||| |||||| ||||||||| |
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| T |
1409806 |
atatcttacctttctctgctcacacatttgcttaaaaggtagaagcatttgatttgtctcacactctatttcttttttgtacgcagctgctacatcgtca |
1409905 |
T |
|
| Q |
479 |
cacacttgtgaaattgggagaaaatttcccactgcaagtacaaaaatgttgaattatcataac |
541 |
Q |
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| |||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||| |
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| T |
1409906 |
cgcacttgtgaaattgggagcatatttcccactgcaagtacaaaaatgttgaattatcataac |
1409968 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 82 - 141
Target Start/End: Original strand, 1409549 - 1409608
Alignment:
| Q |
82 |
tatttgaggaagaatccagtttgatcttagcactattgatgataataaatctttattagt |
141 |
Q |
| |
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||||||||||||||| |||||||||||||| ||||||| ||||||||||||||||||||| |
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| T |
1409549 |
tatttgaggaagaatgcagtttgatcttagaactattggtgataataaatctttattagt |
1409608 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 244 - 308
Target Start/End: Original strand, 1402810 - 1402874
Alignment:
| Q |
244 |
tacttcctctgccactgcagatgccacatcatctgattcaatcactacaacttctacatgcacct |
308 |
Q |
| |
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|||||||||||| ||||||| ||| ||||||||||||||||||||||| || ||||||||||||| |
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|
| T |
1402810 |
tacttcctctgctactgcagttgctacatcatctgattcaatcactactacatctacatgcacct |
1402874 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 129; Significance: 2e-66; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 375 - 542
Target Start/End: Original strand, 22621884 - 22622052
Alignment:
| Q |
375 |
gaacaatatcttacctttctctgctcacacattttctaaaaag-tagaaacatttgatttgtctccaactctatttcctttttgtacgtagctgcaacat |
473 |
Q |
| |
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|||||||||||||||||||| ||||||||||||| || ||||| ||||| ||||||||||| |||| |||||||||||||||| |||| ||||||||||| |
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| T |
22621884 |
gaacaatatcttacctttctatgctcacacatttacttaaaaggtagaagcatttgatttgcctcccactctatttcctttttttacgcagctgcaacat |
22621983 |
T |
|
| Q |
474 |
cgtcacacacttgtgaaattgggagaaaatttcccactgcaagtacaaaaatgttgaattatcataact |
542 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22621984 |
cgtcacacacttgtgaaattgggagaaaatttcccactgcaagtacaaaaatgttgaattatcataact |
22622052 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 105; Significance: 3e-52; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 82 - 206
Target Start/End: Original strand, 19023787 - 19023911
Alignment:
| Q |
82 |
tatttgaggaagaatccagtttgatcttagcactattgatgataataaatctttattagtcaaggtaaatgctaaaatgattttgctgtcattatagaag |
181 |
Q |
| |
|
|||||||||| ||||||||||||||||| ||||||||| |||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
19023787 |
tatttgaggatgaatccagtttgatcttggcactattggtgataataaatcattattagtcaaggtagatgctaaaatgattttgctgtcattatagaag |
19023886 |
T |
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| Q |
182 |
taccttttaaataagccacccattg |
206 |
Q |
| |
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||||||||||||||||||||||||| |
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| T |
19023887 |
taccttttaaataagccacccattg |
19023911 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 231 - 304
Target Start/End: Original strand, 11955361 - 11955434
Alignment:
| Q |
231 |
tagcatacttcattacttcctctgccactgcagatgccacatcatctgattcaatcactacaacttctacatgc |
304 |
Q |
| |
|
|||||| ||| | |||||||||||| | ||||| ||| ||||||||| |||||||||||| || ||||||||| |
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|
| T |
11955361 |
tagcatccttaactacttcctctgctattgcagttgctacatcatcttattcaatcactaaaatatctacatgc |
11955434 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 56; Significance: 6e-23; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 82 - 141
Target Start/End: Original strand, 14244855 - 14244914
Alignment:
| Q |
82 |
tatttgaggaagaatccagtttgatcttagcactattgatgataataaatctttattagt |
141 |
Q |
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|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
14244855 |
tatttgaggaagaatccagtttgatcttagcactattggtgataataaatctttattagt |
14244914 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 56; Significance: 6e-23; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 82 - 141
Target Start/End: Original strand, 6355405 - 6355464
Alignment:
| Q |
82 |
tatttgaggaagaatccagtttgatcttagcactattgatgataataaatctttattagt |
141 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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|
| T |
6355405 |
tatttgaggaagaatccagtttgatcttagcactattggtgataataaatctttattagt |
6355464 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 205 - 304
Target Start/End: Complemental strand, 40682322 - 40682223
Alignment:
| Q |
205 |
tgaagctccaacgaccaatttcgttatagcatacttcattacttcctctgccactgcagatgccacatcatctgattcaatcactacaacttctacatgc |
304 |
Q |
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||||||||||| ||| | ||| |||||||||| ||| |||||||||||| | |||| ||| |||||||||||||||||||||| ||| ||||||||| |
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| T |
40682322 |
tgaagctccaaggacaagtttggttatagcatccttagctacttcctctgctattgcaattgctacatcatctgattcaatcactaaaacatctacatgc |
40682223 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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