View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2932_low_12 (Length: 513)
Name: NF2932_low_12
Description: NF2932
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2932_low_12 |
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Alignment Details
Target: chr3 (Bit Score: 246; Significance: 1e-136; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 244 - 497
Target Start/End: Complemental strand, 28271900 - 28271647
Alignment:
| Q |
244 |
gtttagagaaccttacaagagtgtgacatttggaggaagattagtactgcctgatatgtttacaaattggttattttgcaactctctgcaagattagaaa |
343 |
Q |
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| T |
28271900 |
gtttagagaatcttacaagagtgtgacatttggaggaagattagtattgcctgatatgtttacaaattggttattttgcaactctctgcaagattagaaa |
28271801 |
T |
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| Q |
344 |
ccaatgatcagaaaatcaaaagctaaaatctatataggtagaggagaaatattgtataatttataatttcacatcttacaatagcaatatttcagcagca |
443 |
Q |
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| T |
28271800 |
ccaatgatcagaaaatcaaaagctaaaatctatataggtagaggagaaatattgtataatttataatttcacatcttacaatagcaatatttcagcagca |
28271701 |
T |
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| Q |
444 |
tttgaaatcttgttctgccaaatgttggaaggaacacttccactcaataaattg |
497 |
Q |
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| T |
28271700 |
tttgaaatcttgttctgccaaatgttggaaggaacacttccactcaataaattg |
28271647 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 12 - 243
Target Start/End: Complemental strand, 28272173 - 28271942
Alignment:
| Q |
12 |
cacagaaacaattaacagaatattcataaggaggtggacattttttagtgggacaagggtcactgaagtttgtcggagacgtgccatttgtgtcaatact |
111 |
Q |
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| T |
28272173 |
cacagaaacaattaacagaatattcataaggaggtggacattttttagtgggacaagggtcactgaagtttgtcggagacgtgccatttgtgtcaatact |
28272074 |
T |
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| Q |
112 |
agctccttcaactttacagaactgattcagtgtgttatctgagcataggggattcccatcaagcctgaaattcagtaatctaatgttcaattctttacct |
211 |
Q |
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| T |
28272073 |
agctccttcaactttacagaactgattcagtgtgttatctgagcatagtggattcccatcaagcctgaaattcagtaatctaatgttcaattctttgcct |
28271974 |
T |
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| Q |
212 |
tcacaaaatgagacaaaagaatgtggaagttt |
243 |
Q |
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| T |
28271973 |
tcacaaaatgagacaaaagaatgtggaagttt |
28271942 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 250 - 365
Target Start/End: Complemental strand, 28287249 - 28287134
Alignment:
| Q |
250 |
agaaccttacaagagtgtgacatttggaggaagattagtactgcctgatatgtttacaaattggttattttgcaactctctgcaagattagaaaccaatg |
349 |
Q |
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|||| ||||||||| |||||| |||| |||||||| |||||||||||||| || ||||| ||||||| |||||| ||||||||| | |||| ||| |
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| T |
28287249 |
agaatcttacaagactgtgacttttgaaggaagatcagtactgcctgatacagttgtgaattgattattttccaactccctgcaagatcataaacacatg |
28287150 |
T |
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| Q |
350 |
atcagaaaatcaaaag |
365 |
Q |
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| T |
28287149 |
ctaagaaaatcaaaag |
28287134 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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