View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2932_low_13 (Length: 508)
Name: NF2932_low_13
Description: NF2932
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2932_low_13 |
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Alignment Details
Target: chr4 (Bit Score: 441; Significance: 0; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 441; E-Value: 0
Query Start/End: Original strand, 1 - 492
Target Start/End: Complemental strand, 42686243 - 42685752
Alignment:
| Q |
1 |
cagagacatggtttgtgttaagaatagcatttacttcagcatgacaaacataactagaataggaagaacagaaaaaccattatcaaagtcatcctgatta |
100 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
42686243 |
cagaggcatggtttgtgttaagaatagcatttacttcagcatgacaaacataactagaataggaagaacagaaaaaccattatcaaagtcatccttatta |
42686144 |
T |
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| Q |
101 |
attaaaagacttgagcgagaacatgattaaggttacaacaagagtgaaatatgatttgaaaacactcacgggtacttggtctccaaaggattcccggtcc |
200 |
Q |
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| T |
42686143 |
atgaaaagacttgagcgagaacatgattaaggttacaacaagagtgaaatatgatttgaaaacactcacgggtacttggtctccaaaggattcccggtcc |
42686044 |
T |
|
| Q |
201 |
tagatttctgaaacatataaatagatttatcaatcaatgagagattttacatgatagcaaaagaaaaataactcaaactcctgccttaaacacttaactt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
42686043 |
tagatttctgaaacatataaatagatttatcaatcaatgagaaattttaaatgatagcaaaagaaaaataactcaaactcctgccttaaacacttacctt |
42685944 |
T |
|
| Q |
301 |
ggcccatggtagcttgtcatcagaacaacctcttggaaatccattataaccaatgcctgccacagaaggnnnnnnnnncaaggcataaaacatgtgtttc |
400 |
Q |
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| T |
42685943 |
ggcccatggtagcttgtcatcagaacaacctcttggaaatccattataaccaatgcctgccacagaaggaaaaaaaaacaaggcataaaacatgtgtttc |
42685844 |
T |
|
| Q |
401 |
acaaaaataaatagattggataagagtacagaataaacttaccgagaattatatcatcttgactcactaagcaagcacccacctacattatc |
492 |
Q |
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| T |
42685843 |
acaaaaataaatagattggataagagtacagaataaacttaccgagaattatatcatcttgactcactaagcaagcacccacctacattatc |
42685752 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 298 - 357
Target Start/End: Complemental strand, 21185787 - 21185728
Alignment:
| Q |
298 |
cttggcccatggtagcttgtcatcagaacaacctcttggaaatccattataaccaatgcc |
357 |
Q |
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| T |
21185787 |
cttggcccatggtaacttgtcatcagaacaacctcttggaaattcattataaccaatgcc |
21185728 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 298 - 357
Target Start/End: Complemental strand, 27119385 - 27119326
Alignment:
| Q |
298 |
cttggcccatggtagcttgtcatcagaacaacctcttggaaatccattataaccaatgcc |
357 |
Q |
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| T |
27119385 |
cttggcccatggtaacttgtcatcagaacaacctcttggaaattcattataaccaatgcc |
27119326 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 7 - 53
Target Start/End: Complemental strand, 27119470 - 27119424
Alignment:
| Q |
7 |
catggtttgtgttaagaatagcatttacttcagcatgacaaacataa |
53 |
Q |
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| T |
27119470 |
catggtttgtgttaagaatagcatttacttcagcatgacaaacataa |
27119424 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 442 - 484
Target Start/End: Complemental strand, 21185729 - 21185687
Alignment:
| Q |
442 |
ccgagaattatatcatcttgactcactaagcaagcacccacct |
484 |
Q |
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| T |
21185729 |
ccgagaattatatcatcttgactcactaagcaagcacccacct |
21185687 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 7 - 53
Target Start/End: Complemental strand, 21185872 - 21185826
Alignment:
| Q |
7 |
catggtttgtgttaagaatagcatttacttcagcatgacaaacataa |
53 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
21185872 |
catggtttgtgttaagaatagcatttacttcagcatgacagacataa |
21185826 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 442 - 484
Target Start/End: Complemental strand, 27119327 - 27119285
Alignment:
| Q |
442 |
ccgagaattatatcatcttgactcactaagcaagcacccacct |
484 |
Q |
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| T |
27119327 |
ccgagaattatatcatcttgactcactaagcaagcacccacct |
27119285 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 170 - 209
Target Start/End: Complemental strand, 27119423 - 27119384
Alignment:
| Q |
170 |
gggtacttggtctccaaaggattcccggtcctagatttct |
209 |
Q |
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| T |
27119423 |
gggtacttagtctccaaaggattcccagtcctagatttct |
27119384 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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