View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2932_low_15 (Length: 504)

Name: NF2932_low_15
Description: NF2932
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2932_low_15
NF2932_low_15
[»] chr3 (22 HSPs)
chr3 (114-409)||(31425633-31425928)
chr3 (25-116)||(31426263-31426354)
chr3 (325-409)||(15927479-15927563)
chr3 (323-409)||(31930917-31931003)
chr3 (329-409)||(37143206-37143284)
chr3 (325-409)||(31350490-31350574)
chr3 (323-405)||(31664714-31664796)
chr3 (333-409)||(49875897-49875972)
chr3 (321-408)||(1291619-1291706)
chr3 (333-409)||(33976286-33976362)
chr3 (335-409)||(46114255-46114329)
chr3 (327-409)||(50886295-50886375)
chr3 (333-409)||(4617779-4617855)
chr3 (325-409)||(41610418-41610502)
chr3 (463-504)||(31425540-31425581)
chr3 (464-504)||(31931044-31931084)
chr3 (465-504)||(31350632-31350671)
chr3 (465-504)||(37143127-37143166)
chr3 (326-409)||(37279154-37279237)
chr3 (465-504)||(37410890-37410929)
chr3 (333-405)||(35987018-35987090)
chr3 (464-504)||(40367614-40367654)
[»] chr7 (15 HSPs)
chr7 (333-409)||(2819356-2819432)
chr7 (333-409)||(19223549-19223625)
chr7 (333-409)||(12651214-12651290)
chr7 (333-408)||(18736106-18736180)
chr7 (465-504)||(19223445-19223484)
chr7 (465-504)||(43159601-43159640)
chr7 (365-409)||(9792871-9792916)
chr7 (465-502)||(21103020-21103057)
chr7 (465-502)||(40417783-40417820)
chr7 (328-381)||(48591151-48591204)
chr7 (333-405)||(11778685-11778757)
chr7 (464-504)||(30061287-30061327)
chr7 (364-407)||(41750209-41750253)
chr7 (468-504)||(42598237-42598273)
chr7 (333-401)||(44255789-44255857)
[»] chr6 (10 HSPs)
chr6 (328-408)||(10729675-10729755)
chr6 (326-405)||(28982526-28982605)
chr6 (325-409)||(34383742-34383826)
chr6 (330-409)||(5456739-5456818)
chr6 (325-405)||(2204287-2204367)
chr6 (333-409)||(354375-354450)
chr6 (465-504)||(5739790-5739829)
chr6 (465-504)||(28982665-28982704)
chr6 (465-504)||(33651026-33651065)
chr6 (465-504)||(34383884-34383923)
[»] chr1 (13 HSPs)
chr1 (328-409)||(46859533-46859614)
chr1 (329-409)||(36775208-36775288)
chr1 (333-409)||(5466227-5466303)
chr1 (335-409)||(27260603-27260677)
chr1 (333-409)||(38289667-38289743)
chr1 (465-504)||(18982525-18982564)
chr1 (465-504)||(36775112-36775151)
chr1 (328-409)||(35414463-35414544)
chr1 (324-409)||(41411059-41411144)
chr1 (329-409)||(18982606-18982686)
chr1 (468-504)||(36775078-36775114)
chr1 (333-409)||(48872721-48872797)
chr1 (464-504)||(52714926-52714966)
[»] chr4 (8 HSPs)
chr4 (327-409)||(3698416-3698498)
chr4 (464-504)||(1816025-1816065)
chr4 (328-375)||(4272455-4272502)
chr4 (378-409)||(7146069-7146100)
chr4 (327-386)||(54128172-54128231)
chr4 (333-398)||(4700013-4700078)
chr4 (365-409)||(51734556-51734601)
chr4 (333-409)||(33085262-33085338)
[»] chr5 (12 HSPs)
chr5 (333-409)||(16594271-16594344)
chr5 (333-409)||(25603560-25603634)
chr5 (323-405)||(13739543-13739625)
chr5 (333-409)||(16967370-16967446)
chr5 (465-504)||(16594402-16594441)
chr5 (327-405)||(26009128-26009205)
chr5 (471-504)||(14062865-14062898)
chr5 (328-409)||(29499664-29499745)
chr5 (468-504)||(13309888-13309924)
chr5 (333-409)||(21575637-21575713)
chr5 (464-504)||(32872923-32872963)
chr5 (464-504)||(43214084-43214124)
[»] chr8 (16 HSPs)
chr8 (340-409)||(40649567-40649636)
chr8 (333-408)||(36023186-36023261)
chr8 (328-393)||(44952746-44952811)
chr8 (333-409)||(12171982-12172059)
chr8 (333-409)||(12416410-12416487)
chr8 (465-504)||(21514963-21515002)
chr8 (468-504)||(31266263-31266299)
chr8 (378-409)||(31266171-31266202)
chr8 (465-504)||(40649456-40649495)
chr8 (327-405)||(7612095-7612173)
chr8 (328-405)||(37792050-37792126)
chr8 (365-409)||(42733490-42733535)
chr8 (333-409)||(10309773-10309849)
chr8 (464-504)||(18651376-18651416)
chr8 (464-504)||(42733590-42733630)
chr8 (468-504)||(45406013-45406049)
[»] chr2 (6 HSPs)
chr2 (326-405)||(15260412-15260491)
chr2 (465-504)||(8427558-8427597)
chr2 (465-504)||(22526020-22526059)
chr2 (328-409)||(36003451-36003532)
chr2 (328-409)||(41317300-41317381)
chr2 (464-504)||(26481115-26481155)
[»] scaffold0481 (1 HSPs)
scaffold0481 (333-409)||(1093-1169)


Alignment Details
Target: chr3 (Bit Score: 239; Significance: 1e-132; HSPs: 22)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 114 - 409
Target Start/End: Complemental strand, 31425928 - 31425633
Alignment:
Q  114 ttattagaactaaatgaactatttgtaaaatatacgtttttcttattagaaccaatttcttttgtcaatttaaggttagattgtaaacatacgcttttcc 213  Q
    |||||| ||| |||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31425928 ttattataaccaaatgaactatttgtaaa-tatacgcttttcttattagaaccaatttcttttgtcaatttaaggttagattgtaaacatacgcttttcc 31425830  T
Q  214 tatttccattatgccctttgtcctttaaattgattttgagatgtatcccatttcacgttcttatgttgctattgtaacttgttgtttattcactcatctt 313  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||| |||||||||||||||||||||||||||||    
T  31425829 tatttccattatgccctttgtcctttaaattgattttgagatgta-cccatttcacgttgttatgttgctgttgtaacttgttgtttattcactcatctt 31425731  T
Q  314 ttgtagcttaaaaa--agagtaatgatattttgacaactaatttccaataatttttagtgacaatctttttcctctctttttattggacaataacaat 409  Q
    ||||||||||||||  |||||||||||||||||||||||||||| |||||||||||| |||||| |||||||||||||||||||||||||||||||||    
T  31425730 ttgtagcttaaaaaagagagtaatgatattttgacaactaattttcaataatttttaatgacaacctttttcctctctttttattggacaataacaat 31425633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 25 - 116
Target Start/End: Complemental strand, 31426354 - 31426263
Alignment:
Q  25 tttttggttacaaaggactaagtgtatttaaggtgtttattttggagaaggggaaacctttattaattaaagtggcacatttggtcatctta 116  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  31426354 tttttggttacaaaggactaagtgtatttaaggtgtttattttggacaaggggaaacctttattaattaaagtggcacatttggtcatctta 31426263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 325 - 409
Target Start/End: Original strand, 15927479 - 15927563
Alignment:
Q  325 aaaagagtaatgatattttgacaactaatttccaataatttttagtgacaatctttttcctctctttttattggacaataacaat 409  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||  ||||| | ||||||||||||||||||||||||    
T  15927479 aaaagagtaatgatattttgacaaccaatttccaataatttttagtgacaactttttttcgctctttttattggacaataacaat 15927563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 323 - 409
Target Start/End: Original strand, 31930917 - 31931003
Alignment:
Q  323 aaaaaagagtaatgatattttgacaactaatttccaataatttttagtgacaatctttttcctctctttttattggacaataacaat 409  Q
    ||||||||||||||||||||||||||| ||||||||| || ||||||||| || |||||||||||||||| |||||| |||||||||    
T  31930917 aaaaaagagtaatgatattttgacaaccaatttccaacaaattttagtgataacctttttcctctcttttcattggagaataacaat 31931003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 329 - 409
Target Start/End: Complemental strand, 37143284 - 37143206
Alignment:
Q  329 gagtaatgatattttgacaactaatttccaataatttttagtgacaatctttttcctctctttttattggacaataacaat 409  Q
    ||||||||||||||||||||||||||||||| || |||||||||||| |||||||  ||||||||||||||||||||||||    
T  37143284 gagtaatgatattttgacaactaatttccaacaacttttagtgacaacctttttc--ctctttttattggacaataacaat 37143206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 325 - 409
Target Start/End: Original strand, 31350490 - 31350574
Alignment:
Q  325 aaaagagtaatgatattttgacaactaatttccaataatttttagtgacaatctttttcctctctttttattggacaataacaat 409  Q
    ||||||| ||||||||||||||||| ||||||||| || ||||||||||||  ||||| ||||||||||||||||||||||||||    
T  31350490 aaaagaggaatgatattttgacaaccaatttccaacaacttttagtgacaactttttttctctctttttattggacaataacaat 31350574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 323 - 405
Target Start/End: Complemental strand, 31664796 - 31664714
Alignment:
Q  323 aaaaaagagtaatgatattttgacaactaatttccaataatttttagtgacaatctttttcctctctttttattggacaataa 405  Q
    ||||||||||||||||||||||||||| ||||||||| || ||||||||| || |||||||||||||||| |||||| |||||    
T  31664796 aaaaaagagtaatgatattttgacaaccaatttccaacaacttttagtgataacctttttcctctcttttcattggagaataa 31664714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 333 - 409
Target Start/End: Complemental strand, 49875972 - 49875897
Alignment:
Q  333 aatgatattttgacaactaatttccaataatttttagtgacaatctttttcctctctttttattggacaataacaat 409  Q
    ||||||||||||||||| ||||||||| || ||||||||||||| ||||||||||||||| ||||||||||||||||    
T  49875972 aatgatattttgacaaccaatttccaacaacttttagtgacaat-tttttcctctcttttcattggacaataacaat 49875897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 321 - 408
Target Start/End: Complemental strand, 1291706 - 1291619
Alignment:
Q  321 ttaaaaaagagtaatgatattttgacaactaatttccaataatttttagtgacaatctttttcctctctttttattggacaataacaa 408  Q
    |||||| |||| |||||||||||||||||||| ||  || |||||||||||| |||||||||| |||||||| |||||||||||||||    
T  1291706 ttaaaatagaggaatgatattttgacaactaaattttaacaatttttagtgataatctttttcttctcttttaattggacaataacaa 1291619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 333 - 409
Target Start/End: Original strand, 33976286 - 33976362
Alignment:
Q  333 aatgatattttgacaactaatttccaataatttttagtgacaatctttttcctctctttttattggacaataacaat 409  Q
    |||||||||||||||  |||||| ||| |||||||||||||||   ||||||||||||||||||||| |||||||||    
T  33976286 aatgatattttgacatttaattttcaacaatttttagtgacaacacttttcctctctttttattggataataacaat 33976362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 335 - 409
Target Start/End: Original strand, 46114255 - 46114329
Alignment:
Q  335 tgatattttgacaactaatttccaataatttttagtgacaatctttttcctctctttttattggacaataacaat 409  Q
    ||||||||||||||  ||||||||| || |||| ||||||| ||||||||||||||| ||||| |||||||||||    
T  46114255 tgatattttgacaatcaatttccaacaacttttggtgacaacctttttcctctctttctattgaacaataacaat 46114329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 327 - 409
Target Start/End: Complemental strand, 50886375 - 50886295
Alignment:
Q  327 aagagtaatgatattttgacaactaatttccaataatttttagtgacaatctttttcctctctttttattggacaataacaat 409  Q
    ||||||||||||||||||||||  ||||| ||| || ||| ||||||||  ||||||  ||||||||||||||||||||||||    
T  50886375 aagagtaatgatattttgacaatcaattttcaacaactttcagtgacaacgtttttc--ctctttttattggacaataacaat 50886295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 333 - 409
Target Start/End: Complemental strand, 4617855 - 4617779
Alignment:
Q  333 aatgatattttgacaactaatttccaataatttttagtgacaatctttttcctctctttttattggacaataacaat 409  Q
    ||||||||||||||| | |||||| || ||||||   ||||| | |||||||||| |||||||||||||||||||||    
T  4617855 aatgatattttgacatccaatttcaaacaattttggatgacagtttttttcctctatttttattggacaataacaat 4617779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 325 - 409
Target Start/End: Complemental strand, 41610502 - 41610418
Alignment:
Q  325 aaaagagtaatgatattttgacaactaatttccaataatttttagtgacaatctttttcctctctttttattggacaataacaat 409  Q
    ||||||| |||||||||||||| || |||||  || || || |||||||||  ||||| ||||||||||||| ||||||||||||    
T  41610502 aaaagaggaatgatattttgactacaaattttaaacaacttctagtgacaacattttttctctctttttattagacaataacaat 41610418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 463 - 504
Target Start/End: Complemental strand, 31425581 - 31425540
Alignment:
Q  463 gattgtcacaaaaattgttaaaaaatagatgttcaaatatca 504  Q
    ||||||||||||| |||||||||||| |||||||||||||||    
T  31425581 gattgtcacaaaagttgttaaaaaatggatgttcaaatatca 31425540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 464 - 504
Target Start/End: Original strand, 31931044 - 31931084
Alignment:
Q  464 attgtcacaaaaattgttaaaaaatagatgttcaaatatca 504  Q
    |||||||||||| |||||||||||| |||||||||||||||    
T  31931044 attgtcacaaaagttgttaaaaaatggatgttcaaatatca 31931084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 465 - 504
Target Start/End: Original strand, 31350632 - 31350671
Alignment:
Q  465 ttgtcacaaaaattgttaaaaaatagatgttcaaatatca 504  Q
    |||||||||||||||||||||||| |||||| ||||||||    
T  31350632 ttgtcacaaaaattgttaaaaaatggatgttaaaatatca 31350671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 465 - 504
Target Start/End: Complemental strand, 37143166 - 37143127
Alignment:
Q  465 ttgtcacaaaaattgttaaaaaatagatgttcaaatatca 504  Q
    ||||||||||| |||||||||||| |||||||||||||||    
T  37143166 ttgtcacaaaagttgttaaaaaatggatgttcaaatatca 37143127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 326 - 409
Target Start/End: Original strand, 37279154 - 37279237
Alignment:
Q  326 aaagagtaatgatattttgacaactaatttccaataatttttagtgacaatctttttcctctctttttattggacaataacaat 409  Q
    |||||| ||||||||||||||| |||||||| |||||||||   ||| ||  ||||||||   ||||||||||| |||||||||    
T  37279154 aaagaggaatgatattttgacatctaatttcaaataattttggatgataacttttttccttcatttttattggataataacaat 37279237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 465 - 504
Target Start/End: Complemental strand, 37410929 - 37410890
Alignment:
Q  465 ttgtcacaaaaattgttaaaaaatagatgttcaaatatca 504  Q
    |||||||||||||||| |||||||| ||||||||||||||    
T  37410929 ttgtcacaaaaattgtcaaaaaataaatgttcaaatatca 37410890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 333 - 405
Target Start/End: Complemental strand, 35987090 - 35987018
Alignment:
Q  333 aatgatattttgacaactaatttccaataatttttagtgacaatctttttcctctctttttattggacaataa 405  Q
    ||||||||||||||||| ||||| ||| || ||||| ||| || |||||| || | |||||||| ||||||||    
T  35987090 aatgatattttgacaaccaattttcaacaacttttaatgataaacttttttctttttttttattagacaataa 35987018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 464 - 504
Target Start/End: Complemental strand, 40367654 - 40367614
Alignment:
Q  464 attgtcacaaaaattgttaaaaaatagatgttcaaatatca 504  Q
    |||||||||||||||||| |||||||| | |||||||||||    
T  40367654 attgtcacaaaaattgtttaaaaatagttattcaaatatca 40367614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 61; Significance: 6e-26; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 333 - 409
Target Start/End: Complemental strand, 2819432 - 2819356
Alignment:
Q  333 aatgatattttgacaactaatttccaataatttttagtgacaatctttttcctctctttttattggacaataacaat 409  Q
    ||||||||||||||||| ||||| ||| ||||||||||||||| |||||||||||||||||||||||||||||||||    
T  2819432 aatgatattttgacaaccaattttcaacaatttttagtgacaacctttttcctctctttttattggacaataacaat 2819356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 333 - 409
Target Start/End: Complemental strand, 19223625 - 19223549
Alignment:
Q  333 aatgatattttgacaactaatttccaataatttttagtgacaatctttttcctctctttttattggacaataacaat 409  Q
    ||||||||||||||||  ||||| |||||||||||| ||||||| ||||||||||||||||||||||||||||||||    
T  19223625 aatgatattttgacaatcaattttcaataatttttaatgacaatttttttcctctctttttattggacaataacaat 19223549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 333 - 409
Target Start/End: Original strand, 12651214 - 12651290
Alignment:
Q  333 aatgatattttgacaactaatttccaataatttttagtgacaatctttttcctctctttttattggacaataacaat 409  Q
    ||||||||||||||||| ||||||||| || |||| |||||||  |||||||||| ||| |||||||||||||||||    
T  12651214 aatgatattttgacaaccaatttccaacaacttttggtgacaacttttttcctctttttctattggacaataacaat 12651290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 333 - 408
Target Start/End: Complemental strand, 18736180 - 18736106
Alignment:
Q  333 aatgatattttgacaactaatttccaataatttttagtgacaatctttttcctctctttttattggacaataacaa 408  Q
    ||||||||||||| || ||||||  || |||||||||||||||   ||||||||| ||||||||||||||||||||    
T  18736180 aatgatattttgataaataattttaaacaatttttagtgacaactcttttcctct-tttttattggacaataacaa 18736106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 465 - 504
Target Start/End: Complemental strand, 19223484 - 19223445
Alignment:
Q  465 ttgtcacaaaaattgttaaaaaatagatgttcaaatatca 504  Q
    |||||||||||||||||||||| |||||||||||||||||    
T  19223484 ttgtcacaaaaattgttaaaaagtagatgttcaaatatca 19223445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 465 - 504
Target Start/End: Original strand, 43159601 - 43159640
Alignment:
Q  465 ttgtcacaaaaattgttaaaaaatagatgttcaaatatca 504  Q
    |||||||||||||||||||||||| | |||||||||||||    
T  43159601 ttgtcacaaaaattgttaaaaaatggttgttcaaatatca 43159640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 365 - 409
Target Start/End: Complemental strand, 9792916 - 9792871
Alignment:
Q  365 tttagtgacaatcttttt-cctctctttttattggacaataacaat 409  Q
    ||||||||||| |||||| |||||||| ||||||||||||||||||    
T  9792916 tttagtgacaaccttttttcctctcttcttattggacaataacaat 9792871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 465 - 502
Target Start/End: Complemental strand, 21103057 - 21103020
Alignment:
Q  465 ttgtcacaaaaattgttaaaaaatagatgttcaaatat 502  Q
    ||||||||||||||||| |||||||| |||||||||||    
T  21103057 ttgtcacaaaaattgtttaaaaatagttgttcaaatat 21103020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 465 - 502
Target Start/End: Complemental strand, 40417820 - 40417783
Alignment:
Q  465 ttgtcacaaaaattgttaaaaaatagatgttcaaatat 502  Q
    |||||||||||||||| ||||||||| |||||||||||    
T  40417820 ttgtcacaaaaattgtcaaaaaatagttgttcaaatat 40417783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 328 - 381
Target Start/End: Original strand, 48591151 - 48591204
Alignment:
Q  328 agagtaatgatattttgacaactaatttccaataatttttagtgacaatctttt 381  Q
    |||||||||||||||||||||| ||||||||| || |||  ||||||| |||||    
T  48591151 agagtaatgatattttgacaaccaatttccaacaactttgggtgacaacctttt 48591204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 333 - 405
Target Start/End: Complemental strand, 11778757 - 11778685
Alignment:
Q  333 aatgatattttgacaactaatttccaataatttttagtgacaatctttttcctctctttttattggacaataa 405  Q
    ||||||||||||||||| |||||  || || |||||| |||||| ||||| ||  ||| ||||||||||||||    
T  11778757 aatgatattttgacaaccaattttaaacaacttttagggacaattttttttcttccttcttattggacaataa 11778685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 464 - 504
Target Start/End: Complemental strand, 30061327 - 30061287
Alignment:
Q  464 attgtcacaaaaattgttaaaaaatagatgttcaaatatca 504  Q
    ||||||||||||||||| ||||||||| |||| ||||||||    
T  30061327 attgtcacaaaaattgtcaaaaaatagttgttaaaatatca 30061287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 364 - 407
Target Start/End: Complemental strand, 41750253 - 41750209
Alignment:
Q  364 ttttagtgacaatcttttt-cctctctttttattggacaataaca 407  Q
    |||||||||||| |||||| |||||||| ||||||||||||||||    
T  41750253 ttttagtgacaaccttttttcctctcttcttattggacaataaca 41750209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 468 - 504
Target Start/End: Original strand, 42598237 - 42598273
Alignment:
Q  468 tcacaaaaattgttaaaaaatagatgttcaaatatca 504  Q
    ||||||||||||||||||||||| ||| |||||||||    
T  42598237 tcacaaaaattgttaaaaaatagttgtacaaatatca 42598273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 333 - 401
Target Start/End: Original strand, 44255789 - 44255857
Alignment:
Q  333 aatgatattttgacaactaatttccaataatttttagtgacaatctttttcctctctttttattggaca 401  Q
    ||||||||||||||||  |||||  ||||| |||||| ||||| |||||| ||  ||||||||||||||    
T  44255789 aatgatattttgacaatcaattttaaataacttttagggacaaccttttttcttcctttttattggaca 44255857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 61; Significance: 6e-26; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 328 - 408
Target Start/End: Complemental strand, 10729755 - 10729675
Alignment:
Q  328 agagtaatgatattttgacaactaatttccaataatttttagtgacaatctttttcctctctttttattggacaataacaa 408  Q
    |||||||||||||||||||||| ||||||||| || |||||||||||| |||||||||||||||||| |||||||||||||    
T  10729755 agagtaatgatattttgacaaccaatttccaacaacttttagtgacaacctttttcctctctttttactggacaataacaa 10729675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 326 - 405
Target Start/End: Original strand, 28982526 - 28982605
Alignment:
Q  326 aaagagtaatgatattttgacaactaatttccaataatttttagtgacaatctttttcctctctttttattggacaataa 405  Q
    |||||||||||||||||||||||| ||||| ||| || |||||||||||| |||||||||||||||||||||||||||||    
T  28982526 aaagagtaatgatattttgacaaccaattttcaacaacttttagtgacaacctttttcctctctttttattggacaataa 28982605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 325 - 409
Target Start/End: Original strand, 34383742 - 34383826
Alignment:
Q  325 aaaagagtaatgatattttgacaactaatttccaataatttttagtgacaatctttttcctctctttttattggacaataacaat 409  Q
    ||||||| ||||||||||||||| | |||||| || || |||||||||||| | |||||||||||||||||||||||||||||||    
T  34383742 aaaagaggaatgatattttgacatccaatttctaacaacttttagtgacaacccttttcctctctttttattggacaataacaat 34383826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 330 - 409
Target Start/End: Original strand, 5456739 - 5456818
Alignment:
Q  330 agtaatgatattttgacaactaatttccaataatttttagtgacaatctttttcctctctttttattggacaataacaat 409  Q
    |||||||||||||||||||| ||||||||| || ||||||||| ||  ||||| | ||||||||||||||||||||||||    
T  5456739 agtaatgatattttgacaaccaatttccaacaacttttagtgataacattttttcgctctttttattggacaataacaat 5456818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 325 - 405
Target Start/End: Original strand, 2204287 - 2204367
Alignment:
Q  325 aaaagagtaatgatattttgacaactaatttccaataatttttagtgacaatctttttcctctctttttattggacaataa 405  Q
    ||||||| | ||||||||| | ||  ||||||||| || |||||||||||| |||||||||||||||||||||||||||||    
T  2204287 aaaagaggagtgatattttaataatcaatttccaacaacttttagtgacaacctttttcctctctttttattggacaataa 2204367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 333 - 409
Target Start/End: Complemental strand, 354450 - 354375
Alignment:
Q  333 aatgatattttgacaactaatttccaataatttttagtgacaatctttttcctctctttttattggacaataacaat 409  Q
    ||||||||||||||||| ||||||||| || |||||  || ||| ||||||||||| ||||||||||||||||||||    
T  354450 aatgatattttgacaaccaatttccaacaacttttaaggataatttttttcctctc-ttttattggacaataacaat 354375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 465 - 504
Target Start/End: Original strand, 5739790 - 5739829
Alignment:
Q  465 ttgtcacaaaaattgttaaaaaatagatgttcaaatatca 504  Q
    ||||||||||| |||||||||||||| |||||||||||||    
T  5739790 ttgtcacaaaagttgttaaaaaatagttgttcaaatatca 5739829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 465 - 504
Target Start/End: Original strand, 28982665 - 28982704
Alignment:
Q  465 ttgtcacaaaaattgttaaaaaatagatgttcaaatatca 504  Q
    ||||||||||| |||||||||||| |||||||||||||||    
T  28982665 ttgtcacaaaagttgttaaaaaatggatgttcaaatatca 28982704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 465 - 504
Target Start/End: Complemental strand, 33651065 - 33651026
Alignment:
Q  465 ttgtcacaaaaattgttaaaaaatagatgttcaaatatca 504  Q
    |||||||||||||| ||| |||||||||||||||||||||    
T  33651065 ttgtcacaaaaattattacaaaatagatgttcaaatatca 33651026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 465 - 504
Target Start/End: Original strand, 34383884 - 34383923
Alignment:
Q  465 ttgtcacaaaaattgttaaaaaatagatgttcaaatatca 504  Q
    ||||||||||||||||||||||||  ||||||||||||||    
T  34383884 ttgtcacaaaaattgttaaaaaatgaatgttcaaatatca 34383923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 58; Significance: 3e-24; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 328 - 409
Target Start/End: Complemental strand, 46859614 - 46859533
Alignment:
Q  328 agagtaatgatattttgacaactaatttccaataatttttagtgacaatctttttcctctctttttattggacaataacaat 409  Q
    ||||||||||||||| |||||| ||||||||| || ||||||||||| ||||||||||||||||||||| ||||||||||||    
T  46859614 agagtaatgatatttagacaaccaatttccaacaacttttagtgacagtctttttcctctctttttattagacaataacaat 46859533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 329 - 409
Target Start/End: Complemental strand, 36775288 - 36775208
Alignment:
Q  329 gagtaatgatattttgacaactaatttccaataatttttagtgacaatctttttcctctctttttattggacaataacaat 409  Q
    ||||||| ||||||||||||| ||||||||| || |||  ||||||| |||||| |||| |||||||||||||||||||||    
T  36775288 gagtaataatattttgacaaccaatttccaacaactttgggtgacaaccttttttctctttttttattggacaataacaat 36775208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 333 - 409
Target Start/End: Original strand, 5466227 - 5466303
Alignment:
Q  333 aatgatattttgacaactaatttccaataatttttagtgacaatctttttcctctctttttattggacaataacaat 409  Q
    ||||||||||||||||| |||||  || || |||  ||||||| |||||||||| ||| ||||||||||||||||||    
T  5466227 aatgatattttgacaaccaattttaaacaactttgggtgacaacctttttcctcacttcttattggacaataacaat 5466303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 335 - 409
Target Start/End: Original strand, 27260603 - 27260677
Alignment:
Q  335 tgatattttgacaactaatttccaataatttttagtgacaatctttttcctctctttttattggacaataacaat 409  Q
    ||||||||||||| | ||||| ||| ||||||||| |||||| |||||||||| || ||||||||  ||||||||    
T  27260603 tgatattttgacatccaattttcaacaatttttagagacaatatttttcctctgttcttattggatgataacaat 27260677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 333 - 409
Target Start/End: Complemental strand, 38289743 - 38289667
Alignment:
Q  333 aatgatattttgacaactaatttccaataatttttagtgacaatctttttcctctctttttattggacaataacaat 409  Q
    ||||||||||||||| | ||||| ||| || |||||| |||||  ||||| |||| || ||||||||||||||||||    
T  38289743 aatgatattttgacatcaaattttcaacaacttttagagacaactttttttctctattcttattggacaataacaat 38289667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 465 - 504
Target Start/End: Complemental strand, 18982564 - 18982525
Alignment:
Q  465 ttgtcacaaaaattgttaaaaaatagatgttcaaatatca 504  Q
    ||||||||||| |||||||||||| |||||||||||||||    
T  18982564 ttgtcacaaaagttgttaaaaaatggatgttcaaatatca 18982525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 465 - 504
Target Start/End: Complemental strand, 36775151 - 36775112
Alignment:
Q  465 ttgtcacaaaaattgttaaaaaatagatgttcaaatatca 504  Q
    ||||||||||| |||||||||||| |||||||||||||||    
T  36775151 ttgtcacaaaagttgttaaaaaatggatgttcaaatatca 36775112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 328 - 409
Target Start/End: Original strand, 35414463 - 35414544
Alignment:
Q  328 agagtaatgatattttgacaactaatttccaataatttttagtgacaatctttttcctctctttttattggacaataacaat 409  Q
    |||| ||||||||||||||| | |||||  ||||| |||   ||||||  |||||||||| || ||||||||||||||||||    
T  35414463 agaggaatgatattttgacatccaattttaaataactttggatgacaacttttttcctctattcttattggacaataacaat 35414544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 324 - 409
Target Start/End: Complemental strand, 41411144 - 41411059
Alignment:
Q  324 aaaaagagtaatgatattttgacaactaatttccaataatttttagtgacaatctttttcctctctttttattggacaataacaat 409  Q
    |||||||  ||||||||||||||| |||||||| || | ||||   ||||||  |||||||||  || ||||||||||||||||||    
T  41411144 aaaaagatgaatgatattttgacatctaatttcaaacagttttggatgacaacttttttcctccattcttattggacaataacaat 41411059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 329 - 409
Target Start/End: Complemental strand, 18982686 - 18982606
Alignment:
Q  329 gagtaatgatattttgacaactaatttccaataatttttagtgacaatctttttcctctctttttattggacaataacaat 409  Q
    ||||||||||||||||| ||| ||||||||| || |||  |||||||  |||||  ||| ||||||||||| || ||||||    
T  18982686 gagtaatgatattttgataaccaatttccaacaactttgggtgacaacattttttatctttttttattggataacaacaat 18982606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 468 - 504
Target Start/End: Complemental strand, 36775114 - 36775078
Alignment:
Q  468 tcacaaaaattgttaaaaaatagatgttcaaatatca 504  Q
    |||||||| |||||||||||| |||||||||||||||    
T  36775114 tcacaaaagttgttaaaaaatggatgttcaaatatca 36775078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 333 - 409
Target Start/End: Complemental strand, 48872797 - 48872721
Alignment:
Q  333 aatgatattttgacaactaatttccaataatttttagtgacaatctttttcctctctttttattggacaataacaat 409  Q
    |||||||| |||||| | ||||| |||||| || | | ||||| ||||||||||| || |||||||||||| |||||    
T  48872797 aatgatatattgacatccaattttcaataacttgttgggacaacctttttcctctattcttattggacaatgacaat 48872721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 464 - 504
Target Start/End: Original strand, 52714926 - 52714966
Alignment:
Q  464 attgtcacaaaaattgttaaaaaatagatgttcaaatatca 504  Q
    |||||||||||| |||||| ||||| |||||||||||||||    
T  52714926 attgtcacaaaagttgttataaaatggatgttcaaatatca 52714966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 55; Significance: 2e-22; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 327 - 409
Target Start/End: Complemental strand, 3698498 - 3698416
Alignment:
Q  327 aagagtaatgatattttgacaactaatttccaataatttttagtgacaatctttttcctctctttttattggacaataacaat 409  Q
    ||||| ||||||||||  | ||||||||||||| |||||||||||||||  ||||||||||||||||||||||||||||||||    
T  3698498 aagaggaatgatatttgcataactaatttccaacaatttttagtgacaacttttttcctctctttttattggacaataacaat 3698416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 464 - 504
Target Start/End: Original strand, 1816025 - 1816065
Alignment:
Q  464 attgtcacaaaaattgttaaaaaatagatgttcaaatatca 504  Q
    ||||||||||||||||| | |||||||||||||||||||||    
T  1816025 attgtcacaaaaattgtcacaaaatagatgttcaaatatca 1816065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 328 - 375
Target Start/End: Original strand, 4272455 - 4272502
Alignment:
Q  328 agagtaatgatattttgacaactaatttccaataatttttagtgacaa 375  Q
    |||| ||||||||||||||||| ||||||||| || ||||||||||||    
T  4272455 agaggaatgatattttgacaaccaatttccaacaacttttagtgacaa 4272502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 378 - 409
Target Start/End: Original strand, 7146069 - 7146100
Alignment:
Q  378 tttttcctctctttttattggacaataacaat 409  Q
    ||||||||||||||||||||||||||||||||    
T  7146069 tttttcctctctttttattggacaataacaat 7146100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 327 - 386
Target Start/End: Complemental strand, 54128231 - 54128172
Alignment:
Q  327 aagagtaatgatattttgacaactaatttccaataatttttagtgacaatctttttcctc 386  Q
    ||||| ||||||||||||||||| |||||  || || |||||||||||| ||||||||||    
T  54128231 aagaggaatgatattttgacaaccaattttaaacaacttttagtgacaacctttttcctc 54128172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 333 - 398
Target Start/End: Original strand, 4700013 - 4700078
Alignment:
Q  333 aatgatattttgacaactaatttccaataatttttagtgacaatctttttcctctctttttattgg 398  Q
    |||||||||||||||| ||||||  || || ||||||||| ||| ||||||||||  |||||||||    
T  4700013 aatgatattttgacaattaattttaaacaacttttagtgataatttttttcctcttattttattgg 4700078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 365 - 409
Target Start/End: Original strand, 51734556 - 51734601
Alignment:
Q  365 tttagtgacaatctttttc-ctctctttttattggacaataacaat 409  Q
    ||||||||||||||||||  ||||||| ||||||||||||||||||    
T  51734556 tttagtgacaatctttttttctctcttcttattggacaataacaat 51734601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 333 - 409
Target Start/End: Complemental strand, 33085338 - 33085262
Alignment:
Q  333 aatgatattttgacaactaatttccaataatttttagtgacaatctttttcctctctttttattggacaataacaat 409  Q
    ||||||||||||| |   ||||| |||||| |||||  ||||||||||||||| | |||||||||||  ||||||||    
T  33085338 aatgatattttgatattcaattttcaataacttttatggacaatctttttcctttatttttattggatgataacaat 33085262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 47; Significance: 1e-17; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 333 - 409
Target Start/End: Original strand, 16594271 - 16594344
Alignment:
Q  333 aatgatattttgacaactaatttccaataatttttagtgacaatctttttcctctctttttattggacaataacaat 409  Q
    ||||||||||||||||| ||||||||||   ||||||||||||  | ||||||||||||||||||||||||||||||    
T  16594271 aatgatattttgacaaccaatttccaat---ttttagtgacaacttatttcctctctttttattggacaataacaat 16594344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 333 - 409
Target Start/End: Original strand, 25603560 - 25603634
Alignment:
Q  333 aatgatattttgacaactaatttccaataatttttagtgacaatctttttcctctctttttattggacaataacaat 409  Q
    ||||||||||||||||| |||||| || |||||||||||| ||  ||||||  ||||||||||||||||||||||||    
T  25603560 aatgatattttgacaaccaatttctaacaatttttagtgataacatttttc--ctctttttattggacaataacaat 25603634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 323 - 405
Target Start/End: Complemental strand, 13739625 - 13739543
Alignment:
Q  323 aaaaaagagtaatgatattttgacaactaatttccaataatttttagtgacaatctttttcctctctttttattggacaataa 405  Q
    ||||||||| ||||||||||||||||| || ||  || || |||||| ||||| |||||| ||  ||||||||||||||||||    
T  13739625 aaaaaagaggaatgatattttgacaaccaactttaaacaacttttagggacaaccttttttcttcctttttattggacaataa 13739543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 333 - 409
Target Start/End: Original strand, 16967370 - 16967446
Alignment:
Q  333 aatgatattttgacaactaatttccaataatttttagtgacaatctttttcctctctttttattggacaataacaat 409  Q
    ||||||||||||||| ||||||| ||| || |||||| |||||  |||||||||| || ||||||||  ||||||||    
T  16967370 aatgatattttgacatctaattttcaacaacttttagggacaacatttttcctctattcttattggatgataacaat 16967446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 465 - 504
Target Start/End: Original strand, 16594402 - 16594441
Alignment:
Q  465 ttgtcacaaaaattgttaaaaaatagatgttcaaatatca 504  Q
    ||||||||||| |||||||||||| |||||||||||||||    
T  16594402 ttgtcacaaaagttgttaaaaaatggatgttcaaatatca 16594441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 327 - 405
Target Start/End: Original strand, 26009128 - 26009205
Alignment:
Q  327 aagagtaatgatattttgacaactaatttccaataatttttagtgacaatctttttcctctctttttattggacaataa 405  Q
    ||||| ||||||||||||||||  |||||  || || |||||||||||| | ||||||||| || ||||||||||||||    
T  26009128 aagaggaatgatattttgacaatcaattttaaacaacttttagtgacaa-ccttttcctcttttcttattggacaataa 26009205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 471 - 504
Target Start/End: Original strand, 14062865 - 14062898
Alignment:
Q  471 caaaaattgttaaaaaatagatgttcaaatatca 504  Q
    ||||| ||||||||||||||||||||||||||||    
T  14062865 caaaagttgttaaaaaatagatgttcaaatatca 14062898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 328 - 409
Target Start/End: Original strand, 29499664 - 29499745
Alignment:
Q  328 agagtaatgatattttgacaactaatttccaataatttttagtgacaatctttttcctctctttttattggacaataacaat 409  Q
    |||| ||||||||||||||| | |||||  || ||||||||| || |||||||||||||  || ||||||||  ||||||||    
T  29499664 agaggaatgatattttgacatccaatttttaacaatttttagggataatctttttcctcaattcttattggatgataacaat 29499745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 468 - 504
Target Start/End: Complemental strand, 13309924 - 13309888
Alignment:
Q  468 tcacaaaaattgttaaaaaatagatgttcaaatatca 504  Q
    ||||||||||||| ||||||||| |||||||||||||    
T  13309924 tcacaaaaattgtcaaaaaatagttgttcaaatatca 13309888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 333 - 409
Target Start/End: Original strand, 21575637 - 21575713
Alignment:
Q  333 aatgatattttgacaactaatttccaataatttttagtgacaatctttttcctctctttttattggacaataacaat 409  Q
    ||||||||||||||||| |||||  || ||  |||||||||||  |||||||||  || ||| ||||||||||||||    
T  21575637 aatgatattttgacaaccaattttaaacaacatttagtgacaacatttttcctccgttcttaatggacaataacaat 21575713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 464 - 504
Target Start/End: Original strand, 32872923 - 32872963
Alignment:
Q  464 attgtcacaaaaattgttaaaaaatagatgttcaaatatca 504  Q
    |||||||||||| |||| ||||||||| |||||||||||||    
T  32872923 attgtcacaaaagttgtcaaaaaatagttgttcaaatatca 32872963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 464 - 504
Target Start/End: Original strand, 43214084 - 43214124
Alignment:
Q  464 attgtcacaaaaattgttaaaaaatagatgttcaaatatca 504  Q
    |||||||||||| |||||  |||||||||||||||||||||    
T  43214084 attgtcacaaaagttgttgcaaaatagatgttcaaatatca 43214124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 46; Significance: 5e-17; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 340 - 409
Target Start/End: Complemental strand, 40649636 - 40649567
Alignment:
Q  340 ttttgacaactaatttccaataatttttagtgacaatctttttcctctctttttattggacaataacaat 409  Q
    |||||||||| ||||| ||| ||||||||||||||| ||||||||||| |||||||||||||||| ||||    
T  40649636 ttttgacaaccaattttcaacaatttttagtgacaacctttttcctctatttttattggacaatagcaat 40649567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 333 - 408
Target Start/End: Complemental strand, 36023261 - 36023186
Alignment:
Q  333 aatgatattttgacaactaatttccaataatttttagtgacaatctttttcctctctttttattggacaataacaa 408  Q
    ||||||||||||||||  |||||  |||||||||  |||||||||||||||||| ||||| |||||||||||||||    
T  36023261 aatgatattttgacaatcaattttaaataattttgggtgacaatctttttcctcccttttaattggacaataacaa 36023186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 328 - 393
Target Start/End: Complemental strand, 44952811 - 44952746
Alignment:
Q  328 agagtaatgatattttgacaactaatttccaataatttttagtgacaatctttttcctctcttttt 393  Q
    |||| ||||||||||||||||  |||||| || |||||||||||||||||||||| ||||||||||    
T  44952811 agaggaatgatattttgacaatcaatttctaacaatttttagtgacaatcttttttctctcttttt 44952746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 333 - 409
Target Start/End: Original strand, 12171982 - 12172059
Alignment:
Q  333 aatgatattttgacaactaatttccaataatttttagtgacaatctttttcctctcttttta-ttggacaataacaat 409  Q
    ||||||||||||||||| |||||  || || |||||||||||| |||||||||| ||| ||| |||||||||||||||    
T  12171982 aatgatattttgacaaccaattttaaacaaattttagtgacaacctttttcctcccttcttatttggacaataacaat 12172059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 333 - 409
Target Start/End: Original strand, 12416410 - 12416487
Alignment:
Q  333 aatgatattttgacaactaatttccaataatttttagtgacaatctttttcctctcttttta-ttggacaataacaat 409  Q
    ||||||||||||||||| |||||  || || |||||||||||| |||||||||| ||| ||| |||||||||||||||    
T  12416410 aatgatattttgacaaccaattttaaacaaattttagtgacaacctttttcctcccttcttatttggacaataacaat 12416487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 465 - 504
Target Start/End: Original strand, 21514963 - 21515002
Alignment:
Q  465 ttgtcacaaaaattgttaaaaaatagatgttcaaatatca 504  Q
    |||||||||||||||||||||||| |||||||||||||||    
T  21514963 ttgtcacaaaaattgttaaaaaatggatgttcaaatatca 21515002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 468 - 504
Target Start/End: Original strand, 31266263 - 31266299
Alignment:
Q  468 tcacaaaaattgttaaaaaatagatgttcaaatatca 504  Q
    ||||||||||||||||||||| |||||||||||||||    
T  31266263 tcacaaaaattgttaaaaaatggatgttcaaatatca 31266299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 378 - 409
Target Start/End: Original strand, 31266171 - 31266202
Alignment:
Q  378 tttttcctctctttttattggacaataacaat 409  Q
    ||||||||||||||||||||||||||||||||    
T  31266171 tttttcctctctttttattggacaataacaat 31266202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 465 - 504
Target Start/End: Complemental strand, 40649495 - 40649456
Alignment:
Q  465 ttgtcacaaaaattgttaaaaaatagatgttcaaatatca 504  Q
    ||||||||||||||||||||||||  ||||||||||||||    
T  40649495 ttgtcacaaaaattgttaaaaaatgaatgttcaaatatca 40649456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 327 - 405
Target Start/End: Original strand, 7612095 - 7612173
Alignment:
Q  327 aagagtaatgatattttgacaactaatttccaataatttttagtgacaatctttttcctctctttttattggacaataa 405  Q
    ||||| ||||||||||||||||| |||||  || || |||||| |||||||||||| ||  ||| ||||| ||||||||    
T  7612095 aagaggaatgatattttgacaaccaattttaaacaacttttagggacaatcttttttcttccttcttattagacaataa 7612173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 328 - 405
Target Start/End: Original strand, 37792050 - 37792126
Alignment:
Q  328 agagtaatgatattttgacaactaatttccaataatttttagtgacaatctttttcctctctttttattggacaataa 405  Q
    |||| ||||||||||| |||||||||||  |||||||||||| ||||| |||||| ||  ||| ||||| ||||||||    
T  37792050 agagaaatgatattttcacaactaattttaaataatttttagggacaa-cttttttcttccttcttattagacaataa 37792126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 365 - 409
Target Start/End: Original strand, 42733490 - 42733535
Alignment:
Q  365 tttagtgacaatctttt-tcctctctttttattggacaataacaat 409  Q
    |||||||| |||||||| ||||||||| ||||||||||||||||||    
T  42733490 tttagtgataatcttttttcctctcttcttattggacaataacaat 42733535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 333 - 409
Target Start/End: Original strand, 10309773 - 10309849
Alignment:
Q  333 aatgatattttgacaactaatttccaataatttttagtgacaatctttttcctctctttttattggacaataacaat 409  Q
    ||||||||||||||||  |||||  || ||||||  |||| || |||||||||   |||||||||||||||||||||    
T  10309773 aatgatattttgacaatcaattttaaacaattttgggtgataacctttttccttcttttttattggacaataacaat 10309849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 464 - 504
Target Start/End: Complemental strand, 18651416 - 18651376
Alignment:
Q  464 attgtcacaaaaattgttaaaaaatagatgttcaaatatca 504  Q
    |||||||||||| ||||||  ||||||||||||||||||||    
T  18651416 attgtcacaaaagttgttaccaaatagatgttcaaatatca 18651376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 464 - 504
Target Start/End: Original strand, 42733590 - 42733630
Alignment:
Q  464 attgtcacaaaaattgttaaaaaatagatgttcaaatatca 504  Q
    |||||||||||||||||| |||||| | |||||||||||||    
T  42733590 attgtcacaaaaattgtttaaaaatggttgttcaaatatca 42733630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 468 - 504
Target Start/End: Original strand, 45406013 - 45406049
Alignment:
Q  468 tcacaaaaattgttaaaaaatagatgttcaaatatca 504  Q
    ||||||||||| ||||||||||| |||||||||||||    
T  45406013 tcacaaaaattattaaaaaatagttgttcaaatatca 45406049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 326 - 405
Target Start/End: Complemental strand, 15260491 - 15260412
Alignment:
Q  326 aaagagtaatgatattttgacaactaatttccaataatttttagtgacaatctttttcctctctttttattggacaataa 405  Q
    |||||| ||||||||||| ||||| |||||  |||||||||||| || ||||||||| ||  ||||||||||||||||||    
T  15260491 aaagaggaatgatattttaacaaccaattttaaataatttttagggataatcttttttcttcctttttattggacaataa 15260412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 465 - 504
Target Start/End: Complemental strand, 8427597 - 8427558
Alignment:
Q  465 ttgtcacaaaaattgttaaaaaatagatgttcaaatatca 504  Q
    |||||||||||||||| |||||||||||||||||||||||    
T  8427597 ttgtcacaaaaattgtcaaaaaatagatgttcaaatatca 8427558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 465 - 504
Target Start/End: Original strand, 22526020 - 22526059
Alignment:
Q  465 ttgtcacaaaaattgttaaaaaatagatgttcaaatatca 504  Q
    |||||||||||||||| ||||||| |||||||||||||||    
T  22526020 ttgtcacaaaaattgtcaaaaaatggatgttcaaatatca 22526059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 328 - 409
Target Start/End: Original strand, 36003451 - 36003532
Alignment:
Q  328 agagtaatgatattttgacaactaatttccaataatttttagtgacaatctttttcctctctttttattggacaataacaat 409  Q
    |||| |||||||||||||||  ||||||| |||||||||  |||||||  ||||| |||  || |||||| |||||||||||    
T  36003451 agaggaatgatattttgacatttaatttcaaataattttgggtgacaactttttttctccattcttattgaacaataacaat 36003532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 328 - 409
Target Start/End: Complemental strand, 41317381 - 41317300
Alignment:
Q  328 agagtaatgatattttgacaactaatttccaataatttttagtgacaatctttttcctctctttttattggacaataacaat 409  Q
    |||| ||||||||||||||| | ||||| ||| || |||| | |||||||||||| |||| || |||||| ||||| |||||    
T  41317381 agaggaatgatattttgacatccaattttcaacaactttttgggacaatcttttttctctattcttattgaacaatgacaat 41317300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 464 - 504
Target Start/End: Original strand, 26481115 - 26481155
Alignment:
Q  464 attgtcacaaaaattgttaaaaaatagatgttcaaatatca 504  Q
    |||||||||||| |||||||||||||  |||||||||||||    
T  26481115 attgtcacaaaagttgttaaaaaataattgttcaaatatca 26481155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0481 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0481
Description:

Target: scaffold0481; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 333 - 409
Target Start/End: Original strand, 1093 - 1169
Alignment:
Q  333 aatgatattttgacaactaatttccaataatttttagtgacaatctttttcctctctttttattggacaataacaat 409  Q
    ||||||||||||||||| |||||  || || |||  ||||||| |||||||||| ||| ||||||||||||||||||    
T  1093 aatgatattttgacaaccaattttaaacaactttgggtgacaacctttttcctcacttcttattggacaataacaat 1169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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