View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2932_low_16 (Length: 484)
Name: NF2932_low_16
Description: NF2932
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2932_low_16 |
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Alignment Details
Target: chr8 (Bit Score: 279; Significance: 1e-156; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 13 - 295
Target Start/End: Original strand, 43917136 - 43917418
Alignment:
| Q |
13 |
gaacaaacacacattcatcacctttgatacacggactgattcgaacatgataagatatggaaaagttgcatcaatattgcatttctatctacctctttgt |
112 |
Q |
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| T |
43917136 |
gaacaaacacacattcatcacctttgatacacggactgattcgaacatgataagatatggaaaagttgcatcaatattgcatttctatctacctctttgt |
43917235 |
T |
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| Q |
113 |
ggtttctgccatcacaaaatgtttaaatttgtttatttaacctctaatactcgtcgatgcaacatatgtttgcattgtggaattaattatgtgtttgtga |
212 |
Q |
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| T |
43917236 |
ggtttctgccatcacaaaatgtttaaatttgtttatttaacctctaatactcgtcgatgcaacatatgtttgcattgtggaattaattatgtgtttgtga |
43917335 |
T |
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| Q |
213 |
tggatcacatattgccatagaccaatcctcgagtaaacaaacgattcgatctaaaatacgtgcgctcattttttaaccacatc |
295 |
Q |
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| T |
43917336 |
tggatcacatattgccatagaccaatcctcgagtaaacaaacgattcgatctaaaatatgtgcgctcattttttaaccacatc |
43917418 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 366 - 468
Target Start/End: Original strand, 43917490 - 43917592
Alignment:
| Q |
366 |
caagtattatagttatcgagctggtagggaggatcgtagtttgacataacataacaaattattgcatggagaatgctaaccagtgcaccaaggatattgg |
465 |
Q |
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| T |
43917490 |
caagtattatagttttcgagctggtagggaggatcgtagtttgacataacataacaaattattgctaggagaatgctaaccagtgcattaaggatattgg |
43917589 |
T |
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| Q |
466 |
tta |
468 |
Q |
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| T |
43917590 |
tta |
43917592 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 79 - 135
Target Start/End: Complemental strand, 10976074 - 10976018
Alignment:
| Q |
79 |
tgcatcaatattgcatttctatctacctctttgtggtttctgccatcacaaaatgtt |
135 |
Q |
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| T |
10976074 |
tgcaccaatattgcatttatatctacctctttgcggtctctaccaacacacaatgtt |
10976018 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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