View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2932_low_2 (Length: 811)
Name: NF2932_low_2
Description: NF2932
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2932_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 351; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 366 - 788
Target Start/End: Complemental strand, 7222110 - 7221687
Alignment:
| Q |
366 |
aaagcacaaatgaagcataaccgatcaaaagatggaagaagaaacacaaactaataacaattcaacatagatagcagtaagatgataaagcaaaaatgat |
465 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||| |
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| T |
7222110 |
aaagcacaaatgatgcataaccgatcaaaagatggaagaagaaacacaaactaataacaactcaacatagatagcagcaagatgataaagcaaaaatgat |
7222011 |
T |
|
| Q |
466 |
gagagtaatttgtcaatatatgaaagtctaactcacatgtacaatagacttggcacaagcctgtttatttcagaattcttacaccacattttttattgcg |
565 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7222010 |
gagagtaatttgtcaatatatgaaagtctaactcacatgtacaatagacttggcacaagcctgtttatttcagaattcttacaccacattttttattgcg |
7221911 |
T |
|
| Q |
566 |
ttaacag-aacctaccagaagcaaaagccatgttacatattagcaagaaaatcaaagaatgaatgagcataatcagtttcgcacaaacaaatataannnn |
664 |
Q |
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||| ||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
7221910 |
ttaccagaaacctaccagaagcaaaagccatgttacatattagctagaaaatcaaagaatgaatgagcataatcagtttcgcacaaacaattataatttt |
7221811 |
T |
|
| Q |
665 |
nnnggtagaacacacacaattataatgatactaccaacttcctgtatatgtttttaaataaataaacaaacagacaatgctcgctttttacttctagaca |
764 |
Q |
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| T |
7221810 |
tttgttagaacacacacaattataatcatactactaacttcctgtatatgtttttaaataaataaataaacagacaatgcacgctttttacttctagaca |
7221711 |
T |
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| Q |
765 |
gacatggcttgcttgcaaactgca |
788 |
Q |
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| T |
7221710 |
gacatggcttgcttgcaaactgca |
7221687 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 255; E-Value: 1e-141
Query Start/End: Original strand, 14 - 299
Target Start/End: Complemental strand, 7222403 - 7222115
Alignment:
| Q |
14 |
cagagacggaagaaggaccatcgctcggatgaacgaagaagggaggggtttgatgcagagaagggtcaaccgtaggaacatgagccaatctaggtggcat |
113 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7222403 |
cagagacggaagaaggaccatcgctcggatgaacgaagaagggtgtggtttgatgcagagaagggtcaaccgtaggaacatgagccaatctaggtggcat |
7222304 |
T |
|
| Q |
114 |
tgcgatgaacgaaggcaaactgcgga---tcgctacacaacgaatgataccatgttaagatgaaaaaccacatatgagaataagaagaaggagaagattg |
210 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
7222303 |
tgcgatgaacgaaggcaaactgcggaggatcgctacacaacgaatgataccatgttaagatgaaaaagcacatatgagaataagaagaaggagaagattg |
7222204 |
T |
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| Q |
211 |
aataaggaaaagtgtgattctcatagattgaattgtgagcttacaactaattatacaggaaaagtaagtgtgcacaagcgcatcacaca |
299 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
7222203 |
aataaggaaaagtgggattctcatagattgaattgtgagcttacaactaattatataggaaaagtaagtgtgcacaagcgcatcacaca |
7222115 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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