View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2932_low_20 (Length: 416)
Name: NF2932_low_20
Description: NF2932
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2932_low_20 |
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Alignment Details
Target: chr8 (Bit Score: 376; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 12 - 399
Target Start/End: Complemental strand, 36866395 - 36866008
Alignment:
| Q |
12 |
tcatcatgttttgatcatcaaggttatgaggggaacttggattttggttcaagttttatggtttcaatggcaagattgcagcataaagttggaaaggaga |
111 |
Q |
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| T |
36866395 |
tcatcatgttttgatcatcaaggttatgaggggaacttggtttttggttcaagttttatggtttcaatggcaagattgcagcataaagttggaaaggaga |
36866296 |
T |
|
| Q |
112 |
tagataggattaatgtgcagccaggggttttgctctttgaatttcaacaagcaaaggttgctatgtaggaattgaaggtggagttggagagaatagtagt |
211 |
Q |
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| T |
36866295 |
tagataggattaatgtgcagccaggggttttgctctttgaatttcaacaagcaaaggttgctatggaggaattgaaggtggagttggagagaatagtagt |
36866196 |
T |
|
| Q |
212 |
ttatggcgcagagtttgagattcaagcaaaagttgataagttaaaaagttgctttggattgttgaaatgtggtgttgagaatctaatagggaaagttgat |
311 |
Q |
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| T |
36866195 |
ttatgacgcagagtttgagattcaagcaaaagttgataagttaaaaagttgctttggattgttgaaatgtggtgttgagaatctaatagggaaagttgat |
36866096 |
T |
|
| Q |
312 |
gatttctttgatgaaattgttgaaggaaggaagaagcttttggacatgtgcagtcataagtagtgttgttataattcgttgtgaaaac |
399 |
Q |
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| T |
36866095 |
gatttctttgatgaaattgttgaaggaaggaagaagcttttggacatgtgcagtcataagtagtgttgttataattcgttgtgaaaac |
36866008 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 227 - 361
Target Start/End: Complemental strand, 641545 - 641410
Alignment:
| Q |
227 |
tgagattcaagcaaaagttgataagttaaaaagttgctttggattgttgaaatgtggtgttgagaatctaatagggaaagttgatgatttctttgatgaa |
326 |
Q |
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| T |
641545 |
tgagattcaagaaaaagttgagaatgtgaagaattgttttggattattgagatgtggtgtagacactatcacaggacaacttgatgatttctttgatgaa |
641446 |
T |
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| Q |
327 |
attgttgaaggaaggaagaagc-ttttggacatgtg |
361 |
Q |
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| T |
641445 |
atagttgaaggaaggaagaagctttttggacatgtg |
641410 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 307 - 369
Target Start/End: Complemental strand, 33136868 - 33136806
Alignment:
| Q |
307 |
ttgatgatttctttgatgaaattgttgaaggaaggaagaagcttttggacatgtgcagtcata |
369 |
Q |
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| T |
33136868 |
ttgatgatttctttgatgagattgttgaaggaaggaagaagcttttggacttttgtagtcata |
33136806 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 307 - 355
Target Start/End: Complemental strand, 25258619 - 25258571
Alignment:
| Q |
307 |
ttgatgatttctttgatgaaattgttgaaggaaggaagaagcttttgga |
355 |
Q |
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| T |
25258619 |
ttgatgatttcttcgatgaaattgtagaaggtaggaagaagcttttgga |
25258571 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 307 - 355
Target Start/End: Complemental strand, 25322409 - 25322361
Alignment:
| Q |
307 |
ttgatgatttctttgatgaaattgttgaaggaaggaagaagcttttgga |
355 |
Q |
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||||||||||||| ||||||||||| ||||| ||||||||||||||||| |
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| T |
25322409 |
ttgatgatttcttcgatgaaattgtagaaggtaggaagaagcttttgga |
25322361 |
T |
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