View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2932_low_26 (Length: 383)
Name: NF2932_low_26
Description: NF2932
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2932_low_26 |
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Alignment Details
Target: chr3 (Bit Score: 267; Significance: 1e-149; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 13 - 368
Target Start/End: Original strand, 53075989 - 53076334
Alignment:
| Q |
13 |
aatattaccgggtattagatttacataaaaacgctaatcaaatcaggaatgcatcaaaacacagcaaatgaatactcatgattagccgagcaaaacaaat |
112 |
Q |
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| T |
53075989 |
aatattaccgggtattagatttacataaaaacgctaatcaaatcaggaatgcatcaaaacacagcaaatgaatactcatgattagccgagcaaaacaaat |
53076088 |
T |
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| Q |
113 |
ttatgattaacgaacagaactaacaaattcatgattaaatcactatattgagataatgatgatgatgatggaacatgatgaaaacccagacaaacttaaa |
212 |
Q |
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| T |
53076089 |
ttatgattaacgaacagaactaacaaattcatgattaaatcactatattga---------gatgatgatggaacatgatgaaaacccagacaaacttaaa |
53076179 |
T |
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| Q |
213 |
atattataatctctttttcggacgatcacacaaaataaaatgctgagaaatcctctnnnnnnnnctgaaattttttaattttataaaagggtaaaatagg |
312 |
Q |
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| T |
53076180 |
atcttataatctctttttcggacgatcacacaaaataaaatgctgagaaatcctct-aaaaaaactgaaattttttaattttataaaaaggtaaattagg |
53076278 |
T |
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| Q |
313 |
tagttcagatgaaatgtaggggtaaaagtataactgaaggggtatagggtaaaatt |
368 |
Q |
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| T |
53076279 |
tagttcagataaaatgtaggggtgaaagtataactaaagggatatagggtaaaatt |
53076334 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 114; Significance: 1e-57; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 77 - 368
Target Start/End: Complemental strand, 37540033 - 37539747
Alignment:
| Q |
77 |
caaatgaatactcatgattagccgagcaaaacaaatttatgattaacgaacagaactaacaaattcatgattaaatcactatattgagataatgatgatg |
176 |
Q |
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| T |
37540033 |
caaatgaatactcatgattagagcagcaaaacaaatttattattaacaaatagaactaacaaattcatgattaaatcactatcttga------gatgatg |
37539940 |
T |
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| Q |
177 |
atgatggaacatgatgaaaacccagacaaacttaaaatattataatctctttttcggacgatcacacaaaataaaatgctgagaaatcct-ctnnnnnnn |
275 |
Q |
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| T |
37539939 |
atgatgaaacgtgatgaaaatccaagaaaacggaaaaccctgtaatctctttttcgaacgatcacacaaaataaaatgctgagaaatcgtgacaaaaaaa |
37539840 |
T |
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| Q |
276 |
nctgaaattttttaattttataaaagggtaaaataggtagttcagatgaaatgtaggggtaaaagtataactgaaggggtatagggtaaaatt |
368 |
Q |
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| T |
37539839 |
actgaaatttttaaattttataaaagggtaaaatagatagttcagataaaatgtaggggtgagagtataattgtaggggtatggggtaaaatt |
37539747 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 286 - 363
Target Start/End: Original strand, 32035177 - 32035255
Alignment:
| Q |
286 |
tttaattttata-aaagggtaaaataggtagttcagatgaaatgtaggggtaaaagtataactgaaggggtatagggta |
363 |
Q |
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|||||||||||| |||||||||| | ||||||||| | |||||| ||||||||||||||| | |||||||||||||| |
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| T |
32035177 |
tttaattttatataaagggtaaatttggtagttcatgtaaaatgttggggtaaaagtataatagtaggggtatagggta |
32035255 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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