View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2932_low_28 (Length: 345)

Name: NF2932_low_28
Description: NF2932
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2932_low_28
NF2932_low_28
[»] chr6 (36 HSPs)
chr6 (177-340)||(4613678-4613841)
chr6 (17-168)||(4613871-4614022)
chr6 (183-340)||(4579447-4579604)
chr6 (184-340)||(4585652-4585808)
chr6 (178-316)||(4592241-4592379)
chr6 (178-340)||(4516331-4516493)
chr6 (193-340)||(4490315-4490462)
chr6 (193-340)||(4504357-4504504)
chr6 (183-340)||(4598186-4598343)
chr6 (184-340)||(4563727-4563883)
chr6 (184-316)||(4480709-4480841)
chr6 (184-340)||(4557141-4557297)
chr6 (184-340)||(4570988-4571144)
chr6 (184-329)||(3171757-3171902)
chr6 (178-326)||(4560516-4560664)
chr6 (178-326)||(4574318-4574466)
chr6 (178-340)||(4515081-4515243)
chr6 (196-323)||(4617050-4617177)
chr6 (196-340)||(4469831-4469975)
chr6 (196-340)||(4267126-4267270)
chr6 (196-340)||(4461151-4461295)
chr6 (193-340)||(4568078-4568228)
chr6 (178-329)||(4505867-4506018)
chr6 (20-151)||(4563523-4563653)
chr6 (190-326)||(4492977-4493113)
chr6 (187-329)||(4625970-4626112)
chr6 (196-340)||(4256572-4256716)
chr6 (178-323)||(4299723-4299862)
chr6 (178-324)||(4601799-4601945)
chr6 (196-316)||(4622170-4622290)
chr6 (20-71)||(4592067-4592118)
chr6 (96-151)||(4592118-4592173)
chr6 (196-338)||(4260116-4260258)
chr6 (184-274)||(4392052-4392142)
chr6 (193-250)||(4606941-4606998)
chr6 (289-340)||(4457715-4457766)
[»] chr8 (3 HSPs)
chr8 (178-340)||(20863803-20863965)
chr8 (193-326)||(1674251-1674384)
chr8 (193-340)||(16686227-16686374)
[»] chr5 (2 HSPs)
chr5 (193-326)||(28000073-28000206)
chr5 (196-340)||(24103027-24103171)
[»] scaffold0288 (1 HSPs)
scaffold0288 (196-340)||(3679-3823)
[»] scaffold0477 (1 HSPs)
scaffold0477 (184-316)||(4670-4802)
[»] chr7 (1 HSPs)
chr7 (196-340)||(3086448-3086592)
[»] chr3 (1 HSPs)
chr3 (193-292)||(1281139-1281238)


Alignment Details
Target: chr6 (Bit Score: 156; Significance: 8e-83; HSPs: 36)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 156; E-Value: 8e-83
Query Start/End: Original strand, 177 - 340
Target Start/End: Complemental strand, 4613841 - 4613678
Alignment:
Q  177 cagcagcacctcattgatcactttgtccaagttcatatatgaacaacctcctggtctcgtgtcctcctccgccttcttcttcaactcaattgccttttgc 276  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  4613841 cagcagcacctcattgatcactttgtccaagttcatatatgaacaacctcctggtctcgtgtcctcctctgccttcttcttcaactcaattgccttttgc 4613742  T
Q  277 ctcattttctttcctttctctcccaccatcaattcattgaccagcttctctacttcatctctct 340  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  4613741 ctcattttctttcctttctctcccaccatcaattcattgaccagcttctctacctcatctctct 4613678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 17 - 168
Target Start/End: Complemental strand, 4614022 - 4613871
Alignment:
Q  17 agggttaatatacatgctatataattatccaatgtgcatatattcaaaccattcaagataagcaagaatcgttattttaagtttacgatctcttgctgaa 116  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  4614022 agggttaatatacctgctatataattatccaatgtgcatatattcaaaccattcaagataagcaagaatcgttattttaagtttaccatctcttgctgaa 4613923  T
Q  117 gatcagttcatttacatcatcacttaaattcaataagaaactctttgcataa 168  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4613922 gatcagttcatttacatcatcacttaaattcaataagaaactctttgcataa 4613871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 183 - 340
Target Start/End: Original strand, 4579447 - 4579604
Alignment:
Q  183 cacctcattgatcactttgtccaagttcatatatgaacaacctcctggtctcgtgtcctcctccgccttcttcttcaactcaattgccttttgcctcatt 282  Q
    |||||| || |||||||| ||||||||||| |||||||| ||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||     
T  4579447 cacctccttaatcactttctccaagttcatgtatgaacagcctccaggtctcgtgtcctcctccaccttcttcttcaactcaattgccttttgcctcatc 4579546  T
Q  283 ttctttcctttctctcccaccatcaattcattgaccagcttctctacttcatctctct 340  Q
    |||||| ||||||||||||||||||||||||| ||||||||||| || || |||||||    
T  4579547 ttctttgctttctctcccaccatcaattcattaaccagcttctccacctcctctctct 4579604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 184 - 340
Target Start/End: Original strand, 4585652 - 4585808
Alignment:
Q  184 acctcattgatcactttgtccaagttcatatatgaacaacctcctggtctcgtgtcctcctccgccttcttcttcaactcaattgccttttgcctcattt 283  Q
    ||||| || |||||||| |||||||| || |||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||| |    
T  4585652 acctccttaatcactttttccaagtttatgtatgaacaacctccaggtctcgtgtcctcctccgccttcttcttcaactcgattgccttttgcctcatct 4585751  T
Q  284 tctttcctttctctcccaccatcaattcattgaccagcttctctacttcatctctct 340  Q
    ||||||| |||||||||||||||||||||||||||| |||||| || || |||||||    
T  4585752 tctttccattctctcccaccatcaattcattgaccaacttctccacctcctctctct 4585808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 178 - 316
Target Start/End: Original strand, 4592241 - 4592379
Alignment:
Q  178 agcagcacctcattgatcactttgtccaagttcatatatgaacaacctcctggtctcgtgtcctcctccgccttcttcttcaactcaattgccttttgcc 277  Q
    |||| |||||| ||||||| |||||||||||||||||||||||||||||| |||||||||| |||||| ||||||||||||||||| |||||||||| ||    
T  4592241 agcaacacctccttgatcaatttgtccaagttcatatatgaacaacctccaggtctcgtgttctcctctgccttcttcttcaactcgattgcctttttcc 4592340  T
Q  278 tcattttctttcctttctctcccaccatcaattcattga 316  Q
    |||| ||||||||||||||||||||||||||||||||||    
T  4592341 tcatcttctttcctttctctcccaccatcaattcattga 4592379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 178 - 340
Target Start/End: Original strand, 4516331 - 4516493
Alignment:
Q  178 agcagcacctcattgatcactttgtccaagttcatatatgaacaacctcctggtctcgtgtcctcctccgccttcttcttcaactcaattgccttttgcc 277  Q
    ||||||||||| || |||||||| |||||||||| |||||||||||| |||||||| ||||||||||| |||||||||||||| || || ||||||||||    
T  4516331 agcagcacctccttaatcactttttccaagttcacatatgaacaaccacctggtcttgtgtcctcctctgccttcttcttcaattccatggccttttgcc 4516430  T
Q  278 tcattttctttcctttctctcccaccatcaattcattgaccagcttctctacttcatctctct 340  Q
    |||| ||||||||||| ||||||||||| |||||||||| ||||||||| || || |||||||    
T  4516431 tcatcttctttcctttatctcccaccattaattcattgatcagcttctccacctcctctctct 4516493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 193 - 340
Target Start/End: Complemental strand, 4490462 - 4490315
Alignment:
Q  193 atcactttgtccaagttcatatatgaacaacctcctggtctcgtgtcctcctccgccttcttcttcaactcaattgccttttgcctcattttctttcctt 292  Q
    |||||||||||||||||||| ||||||| ||| ||  |||||||||||||| | |||||||||||||||||  | |||||||||||||| ||||||||||    
T  4490462 atcactttgtccaagttcatgtatgaactaccaccgagtctcgtgtcctccgctgccttcttcttcaactccgtcgccttttgcctcatcttctttcctt 4490363  T
Q  293 tctctcccaccatcaattcattgaccagcttctctacttcatctctct 340  Q
    |||||||||||||||||||||||| ||| |||||||| || |||||||    
T  4490362 tctctcccaccatcaattcattgatcagtttctctacctcttctctct 4490315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 193 - 340
Target Start/End: Complemental strand, 4504504 - 4504357
Alignment:
Q  193 atcactttgtccaagttcatatatgaacaacctcctggtctcgtgtcctcctccgccttcttcttcaactcaattgccttttgcctcattttctttcctt 292  Q
    |||||||||||||||||||| ||||||||||| ||  |||| ||||||||||| ||||||||||||||||| || |||||||||||||| ||||||||||    
T  4504504 atcactttgtccaagttcatgtatgaacaaccaccaagtcttgtgtcctcctctgccttcttcttcaactccatggccttttgcctcatcttctttcctt 4504405  T
Q  293 tctctcccaccatcaattcattgaccagcttctctacttcatctctct 340  Q
    |||||||||||||||||||||| |  || |||||||| || |||||||    
T  4504404 tctctcccaccatcaattcattaataagtttctctacctcttctctct 4504357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 183 - 340
Target Start/End: Original strand, 4598186 - 4598343
Alignment:
Q  183 cacctcattgatcactttgtccaagttcatatatgaacaacctcctggtctcgtgtcctcctccgccttcttcttcaactcaattgccttttgcctcatt 282  Q
    |||||| || |||||||| || |||||||| ||||||||||||||  ||||||| ||||||||||||||| ||||||| ||||||| |||||||||||||    
T  4598186 cacctccttaatcactttctctaagttcatgtatgaacaacctccaagtctcgtttcctcctccgccttcatcttcaaatcaattgtcttttgcctcatt 4598285  T
Q  283 ttctttcctttctctcccaccatcaattcattgaccagcttctctacttcatctctct 340  Q
    ||||||||||| ||||||  ||||||||| |||||||||||||| || || |||||||    
T  4598286 ttctttcctttatctcccgacatcaattcgttgaccagcttctccacctcctctctct 4598343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 184 - 340
Target Start/End: Original strand, 4563727 - 4563883
Alignment:
Q  184 acctcattgatcactttgtccaagttcatatatgaacaacctcctggtctcgtgtcctcctccgccttcttcttcaactcaattgccttttgcctcattt 283  Q
    ||||| ||||||||||||||||||||||| |||||||||||||| | ||||||||  |||||| | |||||||||||||||||||||||||||| ||| |    
T  4563727 acctccttgatcactttgtccaagttcatgtatgaacaacctccagctctcgtgttttcctccactttcttcttcaactcaattgccttttgccgcatct 4563826  T
Q  284 tctttcctttctctcccaccatcaattcattgaccagcttctctacttcatctctct 340  Q
    ||||||||||||||||   ||||||||||||||| || ||||| || || |||||||    
T  4563827 tctttcctttctctcctgacatcaattcattgacaagtttctccacctcttctctct 4563883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 184 - 316
Target Start/End: Original strand, 4480709 - 4480841
Alignment:
Q  184 acctcattgatcactttgtccaagttcatatatgaacaacctcctggtctcgtgtcctcctccgccttcttcttcaactcaattgccttttgcctcattt 283  Q
    ||||| || |||||||||||||||||||| ||||||||||| || ||||| ||||||||||| ||| ||||||||||||| || ||||||||| |||| |    
T  4480709 acctccttaatcactttgtccaagttcatgtatgaacaaccaccaggtcttgtgtcctcctctgccatcttcttcaactccatggccttttgcttcatct 4480808  T
Q  284 tctttcctttctctcccaccatcaattcattga 316  Q
    ||||||||||||||||||||| |||||||||||    
T  4480809 tctttcctttctctcccaccaacaattcattga 4480841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 184 - 340
Target Start/End: Original strand, 4557141 - 4557297
Alignment:
Q  184 acctcattgatcactttgtccaagttcatatatgaacaacctcctggtctcgtgtcctcctccgccttcttcttcaactcaattgccttttgcctcattt 283  Q
    ||||| || |||||||| ||||| ||||| ||||||||||| || |||||||||||||||||||||||| |||||| |||||||  ||||| || ||| |    
T  4557141 acctccttaatcactttttccaaattcatgtatgaacaaccaccaggtctcgtgtcctcctccgccttcgtcttcatctcaattatctttttccacatct 4557240  T
Q  284 tctttcctttctctcccaccatcaattcattgaccagcttctctacttcatctctct 340  Q
    ||||||||||||| ||| ||||||||||||||||||  |||||||| ||||||||||    
T  4557241 tctttcctttctccccctccatcaattcattgaccaaattctctacctcatctctct 4557297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 184 - 340
Target Start/End: Original strand, 4570988 - 4571144
Alignment:
Q  184 acctcattgatcactttgtccaagttcatatatgaacaacctcctggtctcgtgtcctcctccgccttcttcttcaactcaattgccttttgcctcattt 283  Q
    ||||| || |||||||| ||||||||||| ||||||||||| || ||||||||||||||||||||||||||||||| ||| |||   |||| |||||| |    
T  4570988 acctccttaatcactttttccaagttcatgtatgaacaaccaccaggtctcgtgtcctcctccgccttcttcttcatctccattatatttttcctcatct 4571087  T
Q  284 tctttcctttctctcccaccatcaattcattgaccagcttctctacttcatctctct 340  Q
    |||||||||| |||||||||||||||||||||||||  ||||| || |||| |||||    
T  4571088 tctttcctttatctcccaccatcaattcattgaccaaattctccacctcatttctct 4571144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 184 - 329
Target Start/End: Original strand, 3171757 - 3171902
Alignment:
Q  184 acctcattgatcactttgtccaagttcatatatgaacaacctcctggtctcgtgtcctcctccgccttcttcttcaactcaattgccttttgcctcattt 283  Q
    ||||| || |||||||| ||||||||||| ||||||||||| ||   ||| || |||||||| ||||||||||||||||| || ||| |||||||||| |    
T  3171757 acctccttaatcactttatccaagttcatgtatgaacaaccaccaaatcttgtatcctcctctgccttcttcttcaactccatggccctttgcctcatct 3171856  T
Q  284 tctttcctttctctcccaccatcaattcattgaccagcttctctac 329  Q
    |||||||||||||||||||||||||||| |||| ||| ||||||||    
T  3171857 tctttcctttctctcccaccatcaattcgttgatcagtttctctac 3171902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 178 - 326
Target Start/End: Original strand, 4560516 - 4560664
Alignment:
Q  178 agcagcacctcattgatcactttgtccaagttcatatatgaacaacctcctggtctcgtgtcctcctccgccttcttcttcaactcaattgccttttgcc 277  Q
    |||| |||||| || |||||||| ||||||||||| |||||||||||||| |||||||||| | |||||||||| ||||||| ||| || ||||||||||    
T  4560516 agcaacacctccttaatcactttctccaagttcatgtatgaacaacctccaggtctcgtgtacacctccgcctttttcttcagctccatggccttttgcc 4560615  T
Q  278 tcattttctttcctttctctcccaccatcaattcattgaccagcttctc 326  Q
    |||| ||||||||||| ||||    |||||||||||||||||| |||||    
T  4560616 tcatcttctttcctttatctcaggacatcaattcattgaccagtttctc 4560664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 178 - 326
Target Start/End: Original strand, 4574318 - 4574466
Alignment:
Q  178 agcagcacctcattgatcactttgtccaagttcatatatgaacaacctcctggtctcgtgtcctcctccgccttcttcttcaactcaattgccttttgcc 277  Q
    |||| |||||| || |||||||| ||||||||  | |||||||||||||| |||||||||||| ||||| |||||||||||| |||||| || |||||||    
T  4574318 agcaacacctccttaatcactttctccaagtttgtgtatgaacaacctccaggtctcgtgtccacctccaccttcttcttcagctcaatggctttttgcc 4574417  T
Q  278 tcattttctttcctttctctcccaccatcaattcattgaccagcttctc 326  Q
    |||| ||||||||||| |||||   |||||||||||||||||| |||||    
T  4574418 tcatcttctttcctttatctccggacatcaattcattgaccagtttctc 4574466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 178 - 340
Target Start/End: Complemental strand, 4515243 - 4515081
Alignment:
Q  178 agcagcacctcattgatcactttgtccaagttcatatatgaacaacctcctggtctcgtgtcctcctccgccttcttcttcaactcaattgccttttgcc 277  Q
    |||| |||||| ||||||||||||||||||||||  |||||| | || ||  |||| |||||||| || |||||||| |||||||| ||  |||||| ||    
T  4515243 agcaacacctccttgatcactttgtccaagttcaagtatgaagacccgccaagtctagtgtcctcgtctgccttctttttcaactccataacctttttcc 4515144  T
Q  278 tcattttctttcctttctctcccaccatcaattcattgaccagcttctctacttcatctctct 340  Q
    ||||||| |||||||||||||||||||||||||||||||| ||||| || || || |||||||    
T  4515143 tcattttatttcctttctctcccaccatcaattcattgacaagcttttcaacctcctctctct 4515081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 196 - 323
Target Start/End: Original strand, 4617050 - 4617177
Alignment:
Q  196 actttgtccaagttcatatatgaacaacctcctggtctcgtgtcctcctccgccttcttcttcaactcaattgccttttgcctcattttctttcctttct 295  Q
    ||||||| ||||||||| ||||||||||| |||||||| |||| |||||| ||||||||||||||||| || ||||||||| |||||||||||||||| |    
T  4617050 actttgttcaagttcatgtatgaacaaccacctggtctagtgttctcctctgccttcttcttcaactccatggccttttgcttcattttctttcctttat 4617149  T
Q  296 ctcccaccatcaattcattgaccagctt 323  Q
    ||||  | |||| |||||||| ||||||    
T  4617150 ctccggctatcacttcattgatcagctt 4617177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 196 - 340
Target Start/End: Original strand, 4469831 - 4469975
Alignment:
Q  196 actttgtccaagttcatatatgaacaacctcctggtctcgtgtcctcctccgccttcttcttcaactcaattgccttttgcctcattttctttcctttct 295  Q
    ||||||||||||||| | ||||||  |||||| ||||| || ||||||||| |||||||||| ||||| ||   ||||| |||||| |||||||| ||||    
T  4469831 actttgtccaagttcttgtatgaaacacctccaggtctggtatcctcctccaccttcttcttgaactccatgatcttttccctcatcttctttccattct 4469930  T
Q  296 ctcccaccatcaattcattgaccagcttctctacttcatctctct 340  Q
    |||| ||||||||||||||||| |||||||| || ||||||||||    
T  4469931 ctccaaccatcaattcattgactagcttctccacctcatctctct 4469975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 196 - 340
Target Start/End: Complemental strand, 4267270 - 4267126
Alignment:
Q  196 actttgtccaagttcatatatgaacaacctcctggtctcgtgtcctcctccgccttcttcttcaactcaattgccttttgcctcattttctttcctttct 295  Q
    ||||||||||||||||| |||||| |||| || ||||| |||| ||| || |||||| |||||||||| |   | |||||| ||||  | ||||||||||    
T  4267270 actttgtccaagttcatgtatgaaaaaccaccaggtcttgtgttctcttctgccttcctcttcaactccaagacattttgcttcatcatatttcctttct 4267171  T
Q  296 ctcccaccatcaattcattgaccagcttctctacttcatctctct 340  Q
    |||||||||||||||||||||| | |||||| || ||||||||||    
T  4267170 ctcccaccatcaattcattgactaacttctcgacgtcatctctct 4267126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 196 - 340
Target Start/End: Original strand, 4461151 - 4461295
Alignment:
Q  196 actttgtccaagttcatatatgaacaacctcctggtctcgtgtcctcctccgccttcttcttcaactcaattgccttttgcctcattttctttcctttct 295  Q
    ||||||||||||||| | ||||||  |||||| ||||| || ||||||||| |||||||||| || || ||  ||||||||||||| ||||||||  |||    
T  4461151 actttgtccaagttcttgtatgaaacacctccaggtctggtatcctcctccaccttcttcttgaattccatgaccttttgcctcatcttctttccaatct 4461250  T
Q  296 ctcccaccatcaattcattgaccagcttctctacttcatctctct 340  Q
    |||| ||||||||||| ||||||| |||||| || ||||| ||||    
T  4461251 ctccaaccatcaattcgttgaccaacttctccacctcatccctct 4461295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 193 - 340
Target Start/End: Original strand, 4568078 - 4568228
Alignment:
Q  193 atcactttgtccaagttcatatatgaacaacctcctggtctcgtgtcctcctccgccttc---ttcttcaactcaattgccttttgcctcattttctttc 289  Q
    |||||||||||||||||||| |||||| || | || ||||| ||||||| ||| ||||||   ||||||||||| |  |||||||||||||| || ||||    
T  4568078 atcactttgtccaagttcatgtatgaagaatcaccaggtcttgtgtccttctctgccttcttcttcttcaactccacggccttttgcctcatcttttttc 4568177  T
Q  290 ctttctctcccaccatcaattcattgaccagcttctctacttcatctctct 340  Q
    |||||| ||||||||| |||||||| | ||||||||| || || |||||||    
T  4568178 ctttctgtcccaccattaattcattcatcagcttctccacctcctctctct 4568228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 178 - 329
Target Start/End: Original strand, 4505867 - 4506018
Alignment:
Q  178 agcagcacctcattgatcactttgtccaagttcatatatgaacaacctcctggtctcgtgtcctcctccgccttcttcttcaactcaattgccttttgcc 277  Q
    |||| |||||| || || |||||||||||||||||  |||||||||| || ||||| || |||||||  ||| |||| |||||||| ||  |||||| ||    
T  4505867 agcaacacctccttaataactttgtccaagttcatgaatgaacaaccaccaggtcttgtatcctcctttgccctctttttcaactccatgacctttttcc 4505966  T
Q  278 tcattttctttcctttctctcccaccatcaattcattgaccagcttctctac 329  Q
    |||| || |||||||||||||| ||||| | ||||| |||||||||||||||    
T  4505967 tcatcttgtttcctttctctccaaccataatttcatcgaccagcttctctac 4506018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 20 - 151
Target Start/End: Original strand, 4563523 - 4563653
Alignment:
Q  20 gttaatatacatgctatataattatccaatgtgcatatattcaaaccattcaagataagcaagaatcgttattttaagtttacgatctcttgctgaagat 119  Q
    |||||||||||||| ||||||||||||||| |||||||||||||| || | || || ||||||||||  || |||||||| | || ||||||||||||||    
T  4563523 gttaatatacatgccatataattatccaatatgcatatattcaaaacacttaaaattagcaagaatcacta-tttaagttcaggaactcttgctgaagat 4563621  T
Q  120 cagttcatttacatcatcacttaaattcaata 151  Q
     | |||| ||||||||  ||||||||||||||    
T  4563622 gacttcacttacatcagaacttaaattcaata 4563653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 190 - 326
Target Start/End: Original strand, 4492977 - 4493113
Alignment:
Q  190 ttgatcactttgtccaagttcatatatgaacaacctcctggtctcgtgtcctcctccgccttcttcttcaactcaattgccttttgcctcattttctttc 289  Q
    ||||||||||||||||||||||| ||||||||||| || |||   ||||||||||| |||||||| ||||||||  | || |||  |||||| || ||||    
T  4492977 ttgatcactttgtccaagttcatgtatgaacaaccaccaggtactgtgtcctcctctgccttctttttcaactccgtggcttttctcctcatcttgtttc 4493076  T
Q  290 ctttctctcccaccatcaattcattgaccagcttctc 326  Q
    |||||||||| ||||| |  ||||||||||| |||||    
T  4493077 ctttctctccaaccataatctcattgaccagattctc 4493113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 187 - 329
Target Start/End: Original strand, 4625970 - 4626112
Alignment:
Q  187 tcattgatcactttgtccaagttcatatatgaacaacctcctggtctcgtgtcctcctccgccttcttcttcaactcaattgccttttgcctcattttct 286  Q
    ||||| |||| ||| ||||  ||||| ||||||||||| || || ||  ||| |||||| ||||||||||||||||| || |||||||||||||| ||||    
T  4625970 tcattaatcagtttatccatattcatgtatgaacaaccaccgggactaatgttctcctctgccttcttcttcaactccatggccttttgcctcatcttct 4626069  T
Q  287 ttcctttctctcccaccatcaattcattgaccagcttctctac 329  Q
    |||| || |||||  |||||||| |||||| ||| ||||||||    
T  4626070 ttccgttatctcctgccatcaatgcattgatcagtttctctac 4626112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 196 - 340
Target Start/End: Complemental strand, 4256716 - 4256572
Alignment:
Q  196 actttgtccaagttcatatatgaacaacctcctggtctcgtgtcctcctccgccttcttcttcaactcaattgccttttgcctcattttctttcctttct 295  Q
    |||||||||||||||||  |||||  |||  |||| || |||| || ||| | |||||||||||| || ||  ||||||||||||| ||||||||||| |    
T  4256716 actttgtccaagttcatcaatgaatgaccagctgggctggtgttcttctctgtcttcttcttcaattccatgaccttttgcctcatcttctttccttttt 4256617  T
Q  296 ctcccaccatcaattcattgaccagcttctctacttcatctctct 340  Q
    |||||  |||||||||||||| ||| ||||| || ||||||||||    
T  4256616 ctcccgacatcaattcattgatcagattctccacctcatctctct 4256572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 178 - 323
Target Start/End: Complemental strand, 4299862 - 4299723
Alignment:
Q  178 agcagcacctcattgatcactttgtccaagttcatatatgaacaacctcctggtctcgtgtcctcctccgccttcttcttcaactcaattgccttttgcc 277  Q
    ||||| ||||| || || ||||||||||||||||| || |||||||| |||||  | |||| |||||| ||||||      |||||  |||||||||| |    
T  4299862 agcagaacctccttaataactttgtccaagttcatgtacgaacaaccacctggattagtgttctcctctgccttc------aactcccttgccttttgtc 4299769  T
Q  278 tcattttctttcctttctctcccaccatcaattcattgaccagctt 323  Q
    |||| || | ||||||||||||||||||||||||||||| ||||||    
T  4299768 tcatcttatctcctttctctcccaccatcaattcattgatcagctt 4299723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 178 - 324
Target Start/End: Original strand, 4601799 - 4601945
Alignment:
Q  178 agcagcacctcattgatcactttgtccaagttcatatatgaacaacctcctggtctcgtgtcctcctccgccttcttcttcaactcaattgccttttgcc 277  Q
    |||| |||||| || || |||||||||| |||| | ||||||||||| ||| |||| |||  |||||  ||| ||||||||||||| || ||||||||||    
T  4601799 agcaacacctccttaataactttgtccaggttcttgtatgaacaaccacctagtctagtgctctcctttgccatcttcttcaactccatggccttttgcc 4601898  T
Q  278 tcattttctttcctttctctcccaccatcaattcattgaccagcttc 324  Q
    |||| ||||| ||||| |||||  | |||| |||||||| |||||||    
T  4601899 tcatcttcttgcctttatctccggctatcacttcattgatcagcttc 4601945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 196 - 316
Target Start/End: Original strand, 4622170 - 4622290
Alignment:
Q  196 actttgtccaagttcatatatgaacaacctcctggtctcgtgtcctcctccgccttcttcttcaactcaattgccttttgcctcattttctttcctttct 295  Q
    ||||||||||||||  | ||||||||||| || || || ||   ||| || ||||||| ||||||||| || |||||||| ||||| ||||||||||| |    
T  4622170 actttgtccaagttgttgtatgaacaaccaccagggctggtcgtctcatctgccttctccttcaactccatggccttttgtctcatcttctttcctttat 4622269  T
Q  296 ctcccaccatcaattcattga 316  Q
    |||||  ||||||||||||||    
T  4622270 ctcccgacatcaattcattga 4622290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 20 - 71
Target Start/End: Original strand, 4592067 - 4592118
Alignment:
Q  20 gttaatatacatgctatataattatccaatgtgcatatattcaaaccattca 71  Q
    |||||||||||||| ||||||||||||||| |||||||||||||| ||||||    
T  4592067 gttaatatacatgccatataattatccaatatgcatatattcaaaacattca 4592118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 96 - 151
Target Start/End: Original strand, 4592118 - 4592173
Alignment:
Q  96 agtttacgatctcttgctgaagatcagttcatttacatcatcacttaaattcaata 151  Q
    |||||| || |||||||||||||| |||||| ||||||||||||||||||||||||    
T  4592118 agtttaggaactcttgctgaagatgagttcacttacatcatcacttaaattcaata 4592173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 196 - 338
Target Start/End: Complemental strand, 4260258 - 4260116
Alignment:
Q  196 actttgtccaagttcatatatgaacaacctcctggtctcgtgtcctcctccgccttcttcttcaactcaattgccttttgcctcattttctttcctttct 295  Q
    |||||||||||||||||  ||||| ||||   ||| || |||| |||||| |||||| |||||||||| ||  ||||||||||||| ||||||||||  |    
T  4260258 actttgtccaagttcatcaatgaataaccagatggactggtgttctcctctgccttcctcttcaactccatgaccttttgcctcatcttctttccttctt 4260159  T
Q  296 ctcccaccatcaattcattgaccagcttctctacttcatctct 338  Q
    ||||   ||| | |||||||| ||||||| | || ||||||||    
T  4260158 ctcctgacataatttcattgatcagcttcgccacctcatctct 4260116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #34
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 184 - 274
Target Start/End: Complemental strand, 4392142 - 4392052
Alignment:
Q  184 acctcattgatcactttgtccaagttcatatatgaacaacctcctggtctcgtgtcctcctccgccttcttcttcaactcaattgcctttt 274  Q
    ||||| || |||| |||||||||||||||  ||||| |||| || ||||  ||||||||||  ||||||||||||||||| || |||||||    
T  4392142 acctccttaatcagtttgtccaagttcatgaatgaagaaccaccaggtcatgtgtcctcctttgccttcttcttcaactcgatcgcctttt 4392052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #35
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 193 - 250
Target Start/End: Complemental strand, 4606998 - 4606941
Alignment:
Q  193 atcactttgtccaagttcatatatgaacaacctcctggtctcgtgtcctcctccgcct 250  Q
    |||||||| ||||||||||| |||||| |||| ||||||||| ||||| |||||||||    
T  4606998 atcactttttccaagttcatgtatgaaaaaccacctggtctcttgtccccctccgcct 4606941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #36
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 289 - 340
Target Start/End: Original strand, 4457715 - 4457766
Alignment:
Q  289 cctttctctcccaccatcaattcattgaccagcttctctacttcatctctct 340  Q
    ||||| ||||||||||||||||||||||| | |||||| || ||||||||||    
T  4457715 cctttttctcccaccatcaattcattgactaacttctccacctcatctctct 4457766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 91; Significance: 5e-44; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 178 - 340
Target Start/End: Complemental strand, 20863965 - 20863803
Alignment:
Q  178 agcagcacctcattgatcactttgtccaagttcatatatgaacaacctcctggtctcgtgtcctcctccgccttcttcttcaactcaattgccttttgcc 277  Q
    |||| |||||| || |||||||||||||||||||||||||||| |||| | ||||| ||||||||||| |||||||||||||||||| ||| ||||||||    
T  20863965 agcaacacctccttaatcactttgtccaagttcatatatgaaccaccttccggtcttgtgtcctcctctgccttcttcttcaactcatttgtcttttgcc 20863866  T
Q  278 tcattttctttcctttctctcccaccatcaattcattgaccagcttctctacttcatctctct 340  Q
    ||||  || |||||||||||||||||||||||||||| |||||| |||| || || |||||||    
T  20863865 tcatcctccttcctttctctcccaccatcaattcatttaccagcatctccacctcctctctct 20863803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 193 - 326
Target Start/End: Original strand, 1674251 - 1674384
Alignment:
Q  193 atcactttgtccaagttcatatatgaacaacctcctggtctcgtgtcctcctccgccttcttcttcaactcaattgccttttgcctcattttctttcctt 292  Q
    |||||||||||||||||||| ||||||||||| |||||||| |||| |||||| |||||||||||||| || || |||||||||||||| || ||||| |    
T  1674251 atcactttgtccaagttcatgtatgaacaaccacctggtctagtgttctcctctgccttcttcttcaattccatggccttttgcctcatcttttttccat 1674350  T
Q  293 tctctcccaccatcaattcattgaccagcttctc 326  Q
    ||||||||||||||||||||||||  ||||||||    
T  1674351 tctctcccaccatcaattcattgataagcttctc 1674384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 193 - 340
Target Start/End: Complemental strand, 16686374 - 16686227
Alignment:
Q  193 atcactttgtccaagttcatatatgaacaacctcctggtctcgtgtcctcctccgccttcttcttcaactcaattgccttttgcctcattttctttcctt 292  Q
    |||||||| ||||||||||| ||||||||||| || ||||||| ||| || ||| ||||| | | ||  ||||||  ||||| |||||| ||||||||||    
T  16686374 atcactttttccaagttcatgtatgaacaaccaccaggtctcgggtcttcgtccaccttcatttgcagttcaattatctttttcctcatcttctttcctt 16686275  T
Q  293 tctctcccaccatcaattcattgaccagcttctctacttcatctctct 340  Q
    |||||||||||||||||||||||||||  ||||| || ||||||||||    
T  16686274 tctctcccaccatcaattcattgaccaatttctccacctcatctctct 16686227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 82; Significance: 1e-38; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 193 - 326
Target Start/End: Complemental strand, 28000206 - 28000073
Alignment:
Q  193 atcactttgtccaagttcatatatgaacaacctcctggtctcgtgtcctcctccgccttcttcttcaactcaattgccttttgcctcattttctttcctt 292  Q
    |||||||||||||||||||| ||||||||||| |||||||| |||| |||||| ||||| ||||||||||| || |||||||||||||| || ||||| |    
T  28000206 atcactttgtccaagttcatgtatgaacaaccacctggtctagtgttctcctctgcctttttcttcaactccatggccttttgcctcatcttttttccat 28000107  T
Q  293 tctctcccaccatcaattcattgaccagcttctc 326  Q
    ||||||||||||||||||||||||  ||||||||    
T  28000106 tctctcccaccatcaattcattgataagcttctc 28000073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 196 - 340
Target Start/End: Original strand, 24103027 - 24103171
Alignment:
Q  196 actttgtccaagttcatatatgaacaacctcctggtctcgtgtcctcctccgccttcttcttcaactcaattgccttttgcctcattttctttcctttct 295  Q
    ||||||||||||||||| |||||| |||| || | ||| |||| ||| || ||||||||||| ||||| |   |||||||| ||||  ||||||| ||||    
T  24103027 actttgtccaagttcatgtatgaaaaaccaccagatcttgtgttctcttctgccttcttcttgaactccaagaccttttgcttcatcgtctttccgttct 24103126  T
Q  296 ctcccaccatcaattcattgaccagcttctctacttcatctctct 340  Q
    |||||||||||||||||||||| | |||||| || ||||||||||    
T  24103127 ctcccaccatcaattcattgactaacttctcgacgtcatctctct 24103171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0288 (Bit Score: 81; Significance: 4e-38; HSPs: 1)
Name: scaffold0288
Description:

Target: scaffold0288; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 196 - 340
Target Start/End: Complemental strand, 3823 - 3679
Alignment:
Q  196 actttgtccaagttcatatatgaacaacctcctggtctcgtgtcctcctccgccttcttcttcaactcaattgccttttgcctcattttctttcctttct 295  Q
    |||||||||| |||||| ||||||| ||| |||||||| |||| |||||| ||||||||||| ||||| |  |||||||||||||| |||||||||||||    
T  3823 actttgtccaggttcatgtatgaacgaccacctggtctagtgttctcctctgccttcttctttaactccacggccttttgcctcatcttctttcctttct 3724  T
Q  296 ctcccaccatcaattcattgaccagcttctctacttcatctctct 340  Q
    |||||||| ||||||||||||| |||||||| || ||||||||||    
T  3723 ctcccaccgtcaattcattgactagcttctccacctcatctctct 3679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0477 (Bit Score: 61; Significance: 4e-26; HSPs: 1)
Name: scaffold0477
Description:

Target: scaffold0477; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 184 - 316
Target Start/End: Complemental strand, 4802 - 4670
Alignment:
Q  184 acctcattgatcactttgtccaagttcatatatgaacaacctcctggtctcgtgtcctcctccgccttcttcttcaactcaattgccttttgcctcattt 283  Q
    ||||| || |||||||||||||||||||| |||||||| || || |  || |||| |||||| ||||||||||||||||| || |||||||||||||| |    
T  4802 acctccttaatcactttgtccaagttcatgtatgaacagccaccagaactggtgttctcctctgccttcttcttcaactccatggccttttgcctcatct 4703  T
Q  284 tctttcctttctctcccaccatcaattcattga 316  Q
    || ||||||| ||||||  ||||||||||||||    
T  4702 tcattcctttatctcccgacatcaattcattga 4670  T

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Target: chr7 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 196 - 340
Target Start/End: Original strand, 3086448 - 3086592
Alignment:
Q  196 actttgtccaagttcatatatgaacaacctcctggtctcgtgtcctcctccgccttcttcttcaactcaattgccttttgcctcattttctttcctttct 295  Q
    ||||||||||||||||| ||||||||||| ||    || |||| ||| || || |||||||| |||||     | ||||||||||| ||||||||||| |    
T  3086448 actttgtccaagttcatgtatgaacaaccaccgatactggtgttctcttctgctttcttctttaactctgcgacattttgcctcatcttctttcctttat 3086547  T
Q  296 ctcccaccatcaattcattgaccagcttctctacttcatctctct 340  Q
    ||||||||||||||||||||| ||||||||| || || |||||||    
T  3086548 ctcccaccatcaattcattgatcagcttctcgacctcctctctct 3086592  T

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Target: chr3 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 193 - 292
Target Start/End: Original strand, 1281139 - 1281238
Alignment:
Q  193 atcactttgtccaagttcatatatgaacaacctcctggtctcgtgtcctcctccgccttcttcttcaactcaattgccttttgcctcattttctttcctt 292  Q
    ||||||||||| |||||||| ||||||||||| || ||||| |||| ||||||||||  ||||||||| || || |||||||  ||||| ||||||||||    
T  1281139 atcactttgtcgaagttcatgtatgaacaaccacccggtctagtgttctcctccgccgccttcttcaattccatggccttttctctcatattctttcctt 1281238  T

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