View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2932_low_29 (Length: 321)
Name: NF2932_low_29
Description: NF2932
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2932_low_29 |
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Alignment Details
Target: chr5 (Bit Score: 290; Significance: 1e-163; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 5 - 312
Target Start/End: Original strand, 4678413 - 4678717
Alignment:
| Q |
5 |
gaggaggctgagaagacacattaataatttgaaagtttcacctgttggagttggtcttatgggctatatgggaaacaaggtatgagatgtttcacattga |
104 |
Q |
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| T |
4678413 |
gaggaggctgagaagacacattaataatttgaaagtttcacctgttggagttggtcttatgggctatatgggaaacaaggtatgagatgtttcacattga |
4678512 |
T |
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| Q |
105 |
atcaggcttcataattccacattaattgttaactagcttttataatcatttcagcattcattactagtatagtatgtgcaacatgcattttatgatcatt |
204 |
Q |
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| T |
4678513 |
atcaggcttcataattccacattaattgttaactagcttttataatcatttcagcattcattactagtatagtatgtgcaacatgcattttatgatcatt |
4678612 |
T |
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| Q |
205 |
aactattattattagttatagtgaaaatcaccatgctgaataaaggtcgatcggtagaatccattgtatgaattcaacgatctacctttgtcagcaaggc |
304 |
Q |
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| T |
4678613 |
aac---tattattagttatagtgaaaatcaccatgctgaataaaggtcgatcggtagaatccattgtatgaattcaacgatctacctttgtcagcaaggc |
4678709 |
T |
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| Q |
305 |
tgatgatg |
312 |
Q |
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| T |
4678710 |
taatgatg |
4678717 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 6 - 86
Target Start/End: Complemental strand, 40776891 - 40776811
Alignment:
| Q |
6 |
aggaggctgagaagacacattaataatttgaaagtttcacctgttggagttggtcttatgggctatatgggaaacaaggta |
86 |
Q |
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| T |
40776891 |
aggaagctgagaaggcatgttcatcatttgaaagtttctcctgttggagttggtcttatgggatacatgggaaacaaggta |
40776811 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 31 - 86
Target Start/End: Complemental strand, 40770154 - 40770099
Alignment:
| Q |
31 |
atttgaaagtttcacctgttggagttggtcttatgggctatatgggaaacaaggta |
86 |
Q |
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| T |
40770154 |
atttgaaagtttctcaagttggtgttggtcttatgggctacatgggaaacaaggta |
40770099 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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