View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2932_low_3 (Length: 759)
Name: NF2932_low_3
Description: NF2932
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2932_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 444; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 444; E-Value: 0
Query Start/End: Original strand, 20 - 742
Target Start/End: Original strand, 38341245 - 38341977
Alignment:
| Q |
20 |
acaacgcataatatatgtaatttggggttcaaacccggccatcacaaaaacaaaagtatggttctggtccggaagagatgaaatatgagcaaattgaaaa |
119 |
Q |
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||||| ||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38341245 |
acaacacataatatatgtaatccgaggttcaaacccggccatcacaaaaacaaaagtatggttctggtccggaagagatgaaatatgagcaaattgaaaa |
38341344 |
T |
|
| Q |
120 |
tttaacttcataccctacatttgtacatttacccttaaaacacataaaccgccctaaacacccttcattctaacaaattaaaaaatgtccggtctaaaaa |
219 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
38341345 |
tttaacttcatagcctacatttgtacatttacccttaaaacacataaaccgccctaaacacccttcattctaacaaattaaaaaatgtccggcctaaaaa |
38341444 |
T |
|
| Q |
220 |
gctactagtttgggaggatcaatcctactccaagttgatgtgatccggtaagaatgttc--acgggaagttttgtttttggaaatattaggtgtaannnn |
317 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
38341445 |
gctactagtttgggaggatcaatcctactccaagttgatgtgatccggtaagaatgttcatacgggaagttttgtttttggaaatattaggtgtaa---t |
38341541 |
T |
|
| Q |
318 |
nnnnnnnnnnnnnnnnntcacctctagttaattctttcaaataaatattgtattttgaattccatttaattaaaaaatttaacattactgaaatggattg |
417 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
38341542 |
ttttaaaaaaaaaaaaatcacctctagttaattctttcaaataaatattgtattttgaattccatttaattaaaaaatttaacattacttaaatggattg |
38341641 |
T |
|
| Q |
418 |
aagt--nnnnnnnnnnnnnnnnnttgtacaaatgttgaagtag---------aaggatatgcttcaactttgcaatcaaataaacaaaatccaatagaaa |
506 |
Q |
| |
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|||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
38341642 |
aagtaaaaaaaaataaaaaaaaattgtacaaatgttgaagtagtccggtataaaggatatgcttcaactttgcaatcaaataaacaaaatccaataaaaa |
38341741 |
T |
|
| Q |
507 |
aactggaatctagttaattaattagttag-atcctagctagttaatttaagttttatcttttcagtatgaatattcatactcgatctttctgnnnnnnnn |
605 |
Q |
| |
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||||||| |||||||||||| |||||||| |||||||||||| ||| ||||||| ||||||| ||||||||||||||||||||||||||||| |
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| T |
38341742 |
aactggactctagttaattagttagttagaatcctagctagtgaatataagtttgatcttttaagtatgaatattcatactcgatctttctg-ttttttt |
38341840 |
T |
|
| Q |
606 |
nnnnnagttcgaaaaattagaaaaaatttacatttgtttatttctgaatctttcttatatattcagctagtttcaactttatcttttaaatttccatcta |
705 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
38341841 |
tttttagttcgaaaaattagaaaaaatttacatttgtttatttctgaatctttcttatatattcagctagtttcaactttatcttttaaatttccattta |
38341940 |
T |
|
| Q |
706 |
caattgtttaaactgaatcctagttaattcaagtttt |
742 |
Q |
| |
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||||||||||| |||||||||||||||||||||||| |
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|
| T |
38341941 |
gaattgtttaaagtgaatcctagttaattcaagtttt |
38341977 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 91 - 742
Target Start/End: Original strand, 38445509 - 38446170
Alignment:
| Q |
91 |
gaagagatgaaatatgagcaaattgaaaatttaacttcataccctacatttgtacatttacccttaaaacacataaaccgccctaaacacccttcattct |
190 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38445509 |
gaagagatgaaatatgagcaaattgaaaatttaacttcatagcctacatttgtacatttacccttaaaacacataaaccgccctaaacacccttcattct |
38445608 |
T |
|
| Q |
191 |
aacaaattaaaaaatgtccggtctaaaaagctactagtttgggaggatcaatcctactccaagttgatgtgatccggtaagaatgttc--acgggaagtt |
288 |
Q |
| |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
38445609 |
aacaaattaaaaaatgtccggcctaaaaagctactagtttgggaggatcaatcctactccaagttgatgtgatccggtaagaatgttcatacgggaagtt |
38445708 |
T |
|
| Q |
289 |
ttgtttttggaaatattaggtgtaannnnnnnnnnnnnnnnnnnnntcacctctagttaattctttcaaataaatattgtattttgaattccatttaatt |
388 |
Q |
| |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38445709 |
ttgtttttggaaatattaggtgtaa---tttttaaaaaaaaaaaaatcacctctagttaattctttcaaataaatattgtattttgaattccatttaatt |
38445805 |
T |
|
| Q |
389 |
aaaaaatttaacattactgaaatggattgaagt--nnnnnnnnnnnnnnnnnttgtacaaatgttgaagtag---------aaggatatgcttcaacttt |
477 |
Q |
| |
|
|||||||||||||||||| |||||||||||||| |||||||||||||||||||| ||||||||||||||||||| |
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|
| T |
38445806 |
aaaaaatttaacattacttaaatggattgaagtaaaaaaaaataaaaaaaaattgtacaaatgttgaagtagtccggtataaaggatatgcttcaacttt |
38445905 |
T |
|
| Q |
478 |
gcaatcaaataaacaaaatccaatagaaaaactggaatctagttaattaattagttag-atcctagctagttaatttaagttttatcttttcagtatgaa |
576 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||| |||||||||||| |||||||| |||||||||||| ||| ||||||| ||||||| |||||||| |
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| T |
38445906 |
gcaatcaaataaacaaaatccaataaaaaaactggactctagttaattagttagttagaatcctagctagtgaatataagtttgatcttttaagtatgaa |
38446005 |
T |
|
| Q |
577 |
tattcatactcgatctttctgnnnnnnnnnnnnnagttcgaaaaattagaaaaaatttacatttgtttatttctgaatctttcttatatattcagctagt |
676 |
Q |
| |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38446006 |
tattcatactcgatctttctg-ttttttttttttagttcgaaaaattagaaaaaatttacatttgtttatttctgaatctttcttatatattcagctagt |
38446104 |
T |
|
| Q |
677 |
ttcaactttatcttttaaatttccatctacaattgtttaaactgaatcctagttaattcaagtttt |
742 |
Q |
| |
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|||||||||||||||||||||||||| || ||||||||||| |||||||||||||||||||||||| |
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|
| T |
38446105 |
ttcaactttatcttttaaatttccatttagaattgtttaaagtgaatcctagttaattcaagtttt |
38446170 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 109 - 203
Target Start/End: Original strand, 38472267 - 38472362
Alignment:
| Q |
109 |
caaattgaaaatttaacttcataccctacatttgtacattta-cccttaaaacacataaaccgccctaaacacccttcattctaacaaattaaaaa |
203 |
Q |
| |
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|||||||||||||||||||||||||| |||||| ||| ||| |||| |||||| |||||| ||||||||||| || ||||||||||||| |||| |
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| T |
38472267 |
caaattgaaaatttaacttcataccccacatttatactcttacccctaaaaacatataaactaccctaaacacctttaattctaacaaatttaaaa |
38472362 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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