View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2932_low_30 (Length: 312)

Name: NF2932_low_30
Description: NF2932
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2932_low_30
NF2932_low_30
[»] chr5 (11 HSPs)
chr5 (12-296)||(15428921-15429205)
chr5 (37-296)||(15083470-15083729)
chr5 (35-287)||(16397190-16397442)
chr5 (31-267)||(15331694-15331930)
chr5 (12-266)||(15452793-15453047)
chr5 (12-270)||(16414492-16414750)
chr5 (59-276)||(15347547-15347764)
chr5 (120-296)||(17928198-17928374)
chr5 (64-296)||(16403811-16404043)
chr5 (119-276)||(15336234-15336391)
chr5 (63-267)||(15357820-15358024)
[»] chr3 (1 HSPs)
chr3 (64-267)||(8187652-8187855)


Alignment Details
Target: chr5 (Bit Score: 269; Significance: 1e-150; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 12 - 296
Target Start/End: Complemental strand, 15429205 - 15428921
Alignment:
Q  12 atgaccactagctcttcccgttctacctcatttgttccaaaagcattttgtttaaacaattcccaacaatcttcgtcagatagattcgatatatcatgtg 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  15429205 atgaccactagctcttcccgttctacctcatttgttccaaaagcattttgtttaaacaattcccaacaatcttcgtcagatagcttcgatatatcatgtg 15429106  T
Q  112 gaggtattgttcgcatgatttctgctaccttcaaaagacgagtagtgaccaaaattgaagaaccctttcctccacaagccaaaacagatctcaacttttg 211  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||    
T  15429105 gaggtattgttcgcatgatttctgctaccttcaaaagacgagtagtgaccaaaattgaagaaccctttcctctacaagccaaaacagatctcaatttttg 15429006  T
Q  212 ccaattctcttgtttatcgtcccatacatcgtccaatacaagcaaaaatctttttccttgaagcaggtcttgaagtcttgtttgt 296  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15429005 ccaattctcttgtttaacgtcccatacatcgtccaatacaagcaaaaatctttttccttgaagcaggtcttgaagtcttgtttgt 15428921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 37 - 296
Target Start/End: Original strand, 15083470 - 15083729
Alignment:
Q  37 cctcatttgttccaaaagcattttgtttaaacaattcccaacaatcttcgtcagatagattcgatatatcatgtggaggtattgttcgcatgatttctgc 136  Q
    ||||||||| |||||||||  ||||||||||||||||||||||||| ||||| ||||  |||||||||||||||||||||||||||| ||||||||||||    
T  15083470 cctcatttgatccaaaagctctttgtttaaacaattcccaacaatcctcgtcggataacttcgatatatcatgtggaggtattgttcccatgatttctgc 15083569  T
Q  137 taccttcaaaagacgagtagtgaccaaaattgaagaaccctttcctccacaagccaaaacagatctcaacttttgccaattctcttgtttatcgtcccat 236  Q
    ||||||   |||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||  | ||||||||||||||||||||||||||     
T  15083570 tacctttgcaagacgagtagtgaccaaaattgaagcaccctttcctccacaagccaatacagatctcaatctctgccaattctcttgtttatcgtcccaa 15083669  T
Q  237 acatcgtccaatacaagcaaaaatctttttccttgaagcaggtcttgaagtcttgtttgt 296  Q
    || || ||||||||||||||||||||||||||||| || || | |||||||||| |||||    
T  15083670 acgtcatccaatacaagcaaaaatctttttccttgtagtagatgttgaagtcttctttgt 15083729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 35 - 287
Target Start/End: Original strand, 16397190 - 16397442
Alignment:
Q  35 tacctcatttgttccaaaagcattttgtttaaacaattcccaacaatcttcgtcagatagattcgatatatcatgtggaggtattgttcgcatgatttct 134  Q
    ||||||||||| |||||| ||   ||||||||||||||||||||||||||||||||||||  | ||||  |||||  |||||||||||| |||||||| |    
T  16397190 tacctcatttggtccaaaggctcgttgtttaaacaattcccaacaatcttcgtcagatagccttgataattcatgatgaggtattgttcccatgattttt 16397289  T
Q  135 gctaccttcaaaagacgagtagtgaccaaaattgaagaaccctttcctccacaagccaaaacagatctcaacttttgccaattctcttgtttatcgtccc 234  Q
    ||||||||   |||||| |||||||||||||||||||  || ||||||||||||||||| |||||| ||||  ||||||||||||||||||| || | ||    
T  16397290 gctacctttggaagacgggtagtgaccaaaattgaagcgccttttcctccacaagccaatacagatttcaatctttgccaattctcttgtttgtcattcc 16397389  T
Q  235 atacatcgtccaatacaagcaaaaatctttttccttgaagcaggtcttgaagt 287  Q
    | || || ||||| ||||||||  ||||||||| | |||| || |||||||||    
T  16397390 acacgtcatccaaaacaagcaagtatctttttcttcgaagtagatcttgaagt 16397442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 31 - 267
Target Start/End: Original strand, 15331694 - 15331930
Alignment:
Q  31 gttctacctcatttgttccaaaagcattttgtttaaacaattcccaacaatcttcgtcagatagattcgatatatcatgtggaggtattgttcgcatgat 130  Q
    |||||||||||||||  ||||||||   ||||||||||||||||||||||||| | |||||||| || ||||  |||   ||||| ||||||| ||||||    
T  15331694 gttctacctcatttggcccaaaagctcgttgtttaaacaattcccaacaatctacatcagatagctttgatacttcaaaaggaggaattgttcccatgat 15331793  T
Q  131 ttctgctaccttcaaaagacgagtagtgaccaaaattgaagaaccctttcctccacaagccaaaacagatctcaacttttgccaattctcttgtttatcg 230  Q
    ||||||||||||   |||||||||||||||||| | ||||| ||||||||||||||||||||| | |||| ||||||| ||||| ||||||||||| ||     
T  15331794 ttctgctaccttttcaagacgagtagtgaccaatactgaagcaccctttcctccacaagccaacaaagatttcaacttgtgccatttctcttgtttttca 15331893  T
Q  231 tcccatacatcgtccaatacaagcaaaaatctttttc 267  Q
    | ||| ||||| || || ||||||||| || ||||||    
T  15331894 ttccacacatcatctaaaacaagcaaatatttttttc 15331930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 12 - 266
Target Start/End: Complemental strand, 15453047 - 15452793
Alignment:
Q  12 atgaccactagctcttcccgttctacctcatttgttccaaaagcattttgtttaaacaattcccaacaatcttcgtcagatagattcgatatatcatgtg 111  Q
    |||||||| ||||||||| ||||||| ||||||| |||||||||   |||||||||||||| ||||||||||| |||||||||  | |||| ||||||      
T  15453047 atgaccacaagctcttcctgttctacttcatttggtccaaaagctcgttgtttaaacaatttccaacaatctttgtcagatagccttgataaatcatgaa 15452948  T
Q  112 gaggtattgttcgcatgatttctgctaccttcaaaagacgagtagtgaccaaaattgaagaaccctttcctccacaagccaaaacagatctcaacttttg 211  Q
    |||| ||||||| |||||||| | |||||||   |||||| ||||||||||||| |||||||||||||||||||||| |||| | |||| |||| |  |     
T  15452947 gaggcattgttcccatgatttgtcctacctttgcaagacgggtagtgaccaaaactgaagaaccctttcctccacaaaccaatagagatttcaaatcata 15452848  T
Q  212 ccaattctcttgtttatcgtcccatacatcgtccaatacaagcaaaaatcttttt 266  Q
    ||| |||||||||||||| | ||| ||||| ||||| |  |||||| ||||||||    
T  15452847 ccatttctcttgtttatcattccacacatcatccaaaattagcaaatatcttttt 15452793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 12 - 270
Target Start/End: Original strand, 16414492 - 16414750
Alignment:
Q  12 atgaccactagctcttcccgttctacctcatttgttccaaaagcattttgtttaaacaattcccaacaatcttcgtcagatagattcgatatatcatgtg 111  Q
    |||||||| || |||||||||||| | ||||||| |||||| ||  ||||||| ||||| ||| |||| || | |||||||||    |||| |||||| |    
T  16414492 atgaccacgagttcttcccgttcttcatcatttggtccaaaggctctttgtttcaacaaatccaaacagtcattgtcagatagcaatgataaatcatgag 16414591  T
Q  112 gaggtattgttcgcatgatttctgctaccttcaaaagacgagtagtgaccaaaattgaagaaccctttcctccacaagccaaaacagatctcaacttttg 211  Q
    | || | ||||| ||| ||| |||| |||||   |||||||||||||||||||| ||||| |||||| |||||||||||||| ||| || | ||| | ||    
T  16414592 gtggcactgttcccattattgctgcaacctttggaagacgagtagtgaccaaaactgaagcacccttgcctccacaagccaatacatattttaacctctg 16414691  T
Q  212 ccaattctcttgtttatcgtcccatacatcgtccaatacaagcaaaaatctttttcctt 270  Q
    ||| |||||||||| ||| ||||||||||| ||||  || |||||| | ||||||||||    
T  16414692 ccagttctcttgttcatcatcccatacatcatccagcactagcaaatacctttttcctt 16414750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 59 - 276
Target Start/End: Original strand, 15347547 - 15347764
Alignment:
Q  59 ttgtttaaacaattcccaacaatcttcgtcagatagattcgatatatcatgtggaggtattgttcgcatgatttctgctaccttcaaaagacgagtagtg 158  Q
    ||||||||||||||||||||||||    ||||||||  | |||||||||||    || ||||||| ||||||| |||| |||||  |||||||||| ||     
T  15347547 ttgtttaaacaattcccaacaatcagtctcagatagcattgatatatcatgaaagggcattgttcccatgattgctgcaacctttgaaagacgagtggtt 15347646  T
Q  159 accaaaattgaagaaccctttcctccacaagccaaaacagatctcaacttttgccaattctcttgtttatcgtcccatacatcgtccaatacaagcaaaa 258  Q
    || ||||| |||| |||||| |||||||||||||| ||| |||||||  | |||||||||||||| |  |||||||| ||||| ||||| || ||||||     
T  15347647 actaaaatcgaagcacccttgcctccacaagccaatacaaatctcaatctctgccaattctcttggtcgtcgtcccacacatcatccaacaccagcaaat 15347746  T
Q  259 atctttttccttgaagca 276  Q
    ||||||||| ||| ||||    
T  15347747 atctttttctttgcagca 15347764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 120 - 296
Target Start/End: Original strand, 17928198 - 17928374
Alignment:
Q  120 gttcgcatgatttctgctaccttcaaaagacgagtagtgaccaaaattgaagaaccctttcctccacaagccaaaacagatctcaacttttgccaattct 219  Q
    |||| ||||||||||||||||||   ||| || |||||||||||||| |||| ||| ||||||||||||||||| |||||  |||||||  |||||||||    
T  17928198 gttcccatgatttctgctacctttggaagccgtgtagtgaccaaaatcgaagcaccttttcctccacaagccaatacagacttcaacttcagccaattct 17928297  T
Q  220 cttgtttatcgtcccatacatcgtccaatacaagcaaaaatctttttccttgaagcaggtcttgaagtcttgtttgt 296  Q
    ||||||  || ||||| | ||| ||||| ||||||||| ||||||||| | |||| || ||||| |||||| |||||    
T  17928298 cttgttcctcatcccacaaatcatccaaaacaagcaaatatctttttcttcgaagtagctcttgcagtcttctttgt 17928374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 64 - 296
Target Start/End: Original strand, 16403811 - 16404043
Alignment:
Q  64 taaacaattcccaacaatcttcgtcagatagattcgatatatcatgtggaggtattgttcgcatgatttctgctaccttcaaaagacgagtagtgaccaa 163  Q
    |||||||||||||||| ||||  ||||||||  | ||||  ||||| ||||| | ||| | ||||||||  ||||| || ||||||||||||||||||||    
T  16403811 taaacaattcccaacagtctttatcagatagcctagataattcatgaggaggcactgtccccatgattttggctacatttaaaagacgagtagtgaccaa 16403910  T
Q  164 aattgaagaaccctttcctccacaagccaaaacagatctcaacttttgccaattctcttgtttatcgtcccatacatcgtccaatacaagcaaaaatctt 263  Q
    |||||||| ||||||||| ||||||||||| | | || ||||  |  |||||| ||||||||| | || ||| |  || ||||| ||||||||| |||||    
T  16403911 aattgaagtaccctttccaccacaagccaatagaaatttcaatctcagccaatactcttgtttttggttccacaagtcatccaaaacaagcaaatatctt 16404010  T
Q  264 tttccttgaagcaggtcttgaagtcttgtttgt 296  Q
    |||| | |||| ||  ||||||||||| |||||    
T  16404011 tttcttcgaagtagaacttgaagtcttttttgt 16404043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 119 - 276
Target Start/End: Original strand, 15336234 - 15336391
Alignment:
Q  119 tgttcgcatgatttctgctaccttcaaaagacgagtagtgaccaaaattgaagaaccctttcctccacaagccaaaacagatctcaacttttgccaattc 218  Q
    ||||| |||| || ||||||||||   ||| ||||| || || ||||| |||| |||||| |||||||||||||| |||||||||||  |||||||||||    
T  15336234 tgttcccatggttgctgctacctttggaaggcgagtggttactaaaatcgaagcacccttgcctccacaagccaatacagatctcaatctttgccaattc 15336333  T
Q  219 tcttgtttatcgtcccatacatcgtccaatacaagcaaaaatctttttccttgaagca 276  Q
    |||  ||| |||||||| ||||| ||||| ||||||||| ||||||||| ||| ||||    
T  15336334 tctgatttgtcgtcccacacatcatccaacacaagcaaatatctttttctttgtagca 15336391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 63 - 267
Target Start/End: Original strand, 15357820 - 15358024
Alignment:
Q  63 ttaaacaattcccaacaatcttcgtcagatagattcgatatatcatgtggaggtattgttcgcatgatttctgctaccttcaaaagacgagtagtgacca 162  Q
    |||| ||||||||| ||||||  |||||||||  | |||| |||||| |  || ||||||| ||||||| |||| |||||   ||||||||| || ||||    
T  15357820 ttaatcaattcccagcaatctgtgtcagatagcattgataaatcatgagagggcattgttcccatgattgctgcaacctttggaagacgagtggttacca 15357919  T
Q  163 aaattgaagaaccctttcctccacaagccaaaacagatctcaacttttgccaattctcttgtttatcgtcccatacatcgtccaatacaagcaaaaatct 262  Q
    |||  |||| |||||| ||||| |||||||| |||||| ||||  | |||||||||||||||  ||| ||||||||||| ||||| || |||||| ||||    
T  15357920 aaaccgaagcacccttgcctccgcaagccaatacagatttcaatctctgccaattctcttgtccatcatcccatacatcatccaacaccagcaaatatct 15358019  T
Q  263 ttttc 267  Q
    |||||    
T  15358020 ttttc 15358024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 52; Significance: 8e-21; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 64 - 267
Target Start/End: Original strand, 8187652 - 8187855
Alignment:
Q  64 taaacaattcccaacaatcttcgtcagatagattcgatatatcatgtggaggtattgttcgcatgatttctgctaccttcaaaagacgagtagtgaccaa 163  Q
    |||||| ||||||||||||   |||| ||||| |||||| |||||| || ||| |||||| ||||||| |||| |||||   ||| ||||| ||||||||    
T  8187652 taaacatttcccaacaatcagtgtcacatagaatcgataaatcatgaggtggtcttgttcccatgattgctgcaacctttggaaggcgagtggtgaccaa 8187751  T
Q  164 aattgaagaaccctttcctccacaagccaaaacagatctcaacttttgccaattctcttgtttatcgtcccatacatcgtccaatacaagcaaaaatctt 263  Q
    || |||||  || | ||  ||||||||||| |||||| ||||| | ||||| ||  |||||| ||| ||||| ||||||||||| || |||||| |||||    
T  8187752 aactgaagcgccttctctcccacaagccaatacagatttcaacctctgccagtttccttgttcatcatcccacacatcgtccaaaacgagcaaatatctt 8187851  T
Q  264 tttc 267  Q
    ||||    
T  8187852 tttc 8187855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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