View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2932_low_33 (Length: 294)
Name: NF2932_low_33
Description: NF2932
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2932_low_33 |
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Alignment Details
Target: chr5 (Bit Score: 262; Significance: 1e-146; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 18 - 283
Target Start/End: Original strand, 4677658 - 4677923
Alignment:
| Q |
18 |
caattgtggtgtcttgtgcctcacagtttccaagaagtagttccactgaatgctggaaatgtactaggagcagaggataatacacctatccagaaatggg |
117 |
Q |
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| T |
4677658 |
caattgtggtgtcttgtgcctcacagtttccaagaagtagttccactgaatgctggaaatgtactaggagcagaggataatacacctatccagaaatggg |
4677757 |
T |
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| Q |
118 |
aagcaatcattagaagatctttaaacaaatcttctgagcgtgatagcaaacacaaaagccacagcgcgccaccttcgccggtgttgagaacttcttctgc |
217 |
Q |
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| T |
4677758 |
aagcaatcattagaagatctttaaacaaatcttctgagcctgatagcaaacacaaaagccacagcgcgccaccttcgccggtgttgagaacttcttctgc |
4677857 |
T |
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| Q |
218 |
tgctgatgttctagctgataatatagatgctgctaatccaattgatatgctgaatgatgagctcat |
283 |
Q |
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| T |
4677858 |
tgctgatgttctagctgataatatagatgctgctaatccaattgatatgctgaatgatgagctcat |
4677923 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 51; Significance: 3e-20; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 40 - 154
Target Start/End: Complemental strand, 40777544 - 40777430
Alignment:
| Q |
40 |
acagtttccaagaagtagttccactgaatgctggaaatgtactaggagcagaggataatacacctatccagaaatgggaagcaatcattagaagatcttt |
139 |
Q |
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| T |
40777544 |
acagttttcaagaggtagtaccattgaatgctggaaatgtgtttggagcagaggataataaaccaatcccaaaatgggaagaaatcattcggagaactct |
40777445 |
T |
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| Q |
140 |
aaacaaatcttctga |
154 |
Q |
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| T |
40777444 |
aaacaaatcttctga |
40777430 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 40 - 151
Target Start/End: Complemental strand, 40770838 - 40770727
Alignment:
| Q |
40 |
acagtttccaagaagtagttccactgaatgctggaaatgtactaggagcagaggataatacacctatccagaaatgggaagcaatcattagaagatcttt |
139 |
Q |
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||||||||||||| || |||||| |||||||||||||||| | |||||||| |||| || ||| |||| |||||||| ||| ||||||||||| || | |
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| T |
40770838 |
acagtttccaagaggttgttccattgaatgctggaaatgtgtttggagcagaagatagtaaaccaatcccaaaatgggatgcactcattagaagaactct |
40770739 |
T |
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| Q |
140 |
aaacaaatcttc |
151 |
Q |
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| T |
40770738 |
aaacaaatcttc |
40770727 |
T |
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