View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2932_low_34 (Length: 289)
Name: NF2932_low_34
Description: NF2932
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2932_low_34 |
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Alignment Details
Target: chr4 (Bit Score: 233; Significance: 1e-129; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 14 - 275
Target Start/End: Complemental strand, 10498898 - 10498631
Alignment:
| Q |
14 |
gagagcgaacatacattaacaaagcaatcatgaaactgaagtctcataacagaggcaacacttcttggttctcttataagagcttttctcataacatctc |
113 |
Q |
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| T |
10498898 |
gagagagaacatacattaacaaagcaatcatgaaactgaagtctcataacagaggcaacacttcttggttctcttataagagcttttctcataacatctc |
10498799 |
T |
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| Q |
114 |
tgacaatggtttcagcttttggacatgtttttgagtaaaacccaggtcgaagatctgat------gatgttactatgatgatgtttatgatgaagatcag |
207 |
Q |
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| T |
10498798 |
tgacaatggtttcagcttttggacatgtttttgagtaaaacccaggtcgaagatctgatgatgatgatgttactgtgatgatgtttatgatgaagatcag |
10498699 |
T |
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| Q |
208 |
aaacagaaacatggtgatgatgggtcggttgttgggaatctgaaacatggtactacgtttgttgtttt |
275 |
Q |
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| T |
10498698 |
aaacagaaacatggtgataatgggtcggttgttgggaatctgaaacatggtactacgtttgttgtttt |
10498631 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 15 - 222
Target Start/End: Original strand, 10586347 - 10586554
Alignment:
| Q |
15 |
agagcgaacatacattaacaaagcaatcatgaaactgaagtctcataacagaggcaacacttcttggttctcttataagagcttttctcataacatctct |
114 |
Q |
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|||| ||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||| || ||||||| ||||||||||||||||| |
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| T |
10586347 |
agagagaacatacattaacaaagcaatcatgaaattgaaatctcataacagaggcaacacttcttggttcttttttaagagcatttctcataacatctct |
10586446 |
T |
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| Q |
115 |
gacaatggtttcagcttttggacatgtttttgagtaaaacccaggtcgaagatctgatgatgttactatgatgatgtttatgatgaagatcagaaacaga |
214 |
Q |
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| T |
10586447 |
cacagttgtttcagcttgtggacatgtttttgagtaatacccaggtcgaagatctgttgatgttactatgattatgtttatgatgaagatcagaaacata |
10586546 |
T |
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| Q |
215 |
aacatggt |
222 |
Q |
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| T |
10586547 |
agcatggt |
10586554 |
T |
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