View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2932_low_35 (Length: 287)
Name: NF2932_low_35
Description: NF2932
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2932_low_35 |
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| [»] chr7 (4 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 279; Significance: 1e-156; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 1 - 287
Target Start/End: Complemental strand, 28812366 - 28812080
Alignment:
| Q |
1 |
tttccttcagtttttgggaagacacgcttttatcatgcaacaagaggagatatcaccatctccatctgaagaaaacattgtcgatgaaagatatcatttc |
100 |
Q |
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| T |
28812366 |
tttccttcagtttttgggaagacacgcttttatcatgcaaccagaggagatatcaccatctccatctgaagaaaacattgtcgatgaaagatatcatttc |
28812267 |
T |
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| Q |
101 |
atgtcacttcttttgaacttggcaagcacatttttgtatatggtcaatacttacatcgttgtacctacggctgacaattactcactgaaccttggagctg |
200 |
Q |
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| T |
28812266 |
atgtcacttcttttgaacttggcaagcacatttttgtatatggtcaatacttacatcgttgtacctacggctgacaattactcattgaaccttggagctg |
28812167 |
T |
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| Q |
201 |
ctgcaagtgtttgcggtgtcgtcatcggatcaatggctgttgcacaggtttttgcttctgtttatttcagtgcgtggtcgaaccgat |
287 |
Q |
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| T |
28812166 |
ctgcaagtgtttgcggtgtcgtcatcggatcaatggctgttgcacaggtttttgcttctgtttatttcagtgcgtggtcgaaccgat |
28812080 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 26 - 287
Target Start/End: Original strand, 33420345 - 33420606
Alignment:
| Q |
26 |
gcttttatcatgcaacaagaggagatatcaccatctccatctgaagaaaacattgtcgatgaaagatatcatttcatgtcacttcttttgaacttggcaa |
125 |
Q |
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| T |
33420345 |
gcttttattttgctacaagaggagatatcaccatctccatctaaagaaaacattgttgatgaaatatatcatttcatgtcacttcttttgaacttggcaa |
33420444 |
T |
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| Q |
126 |
gcacatttttgtatatggtcaatacttacatcgttgtacctacggctgacaattactcactgaaccttggagctgctgcaagtgtttgcggtgtcgtcat |
225 |
Q |
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| T |
33420445 |
gcacatttttgtatatggtcgctacttacatcattgtacctatgaccggaaactactcattgaaccttggagctgctgcaagtgtttgtggtgttgtcgt |
33420544 |
T |
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| Q |
226 |
cggatcaatggctgttgcacaggtttttgcttctgtttatttcagtgcgtggtcgaaccgat |
287 |
Q |
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| T |
33420545 |
cggatcaatggctattgcacaagtttttgcttctgtttatttcagtatgtggtcgaaccgat |
33420606 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 144; E-Value: 9e-76
Query Start/End: Original strand, 1 - 283
Target Start/End: Original strand, 33413183 - 33413457
Alignment:
| Q |
1 |
tttccttcagtttttgggaagacacgcttttatcatgcaacaagaggagatatcaccatctccatctgaagaaaacattgtcgatgaaagatatcatttc |
100 |
Q |
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||||||||||||||||| |||||| |||||||| |||| | |||||||||||||||||||||| ||||||||||||||| |||||| |||||| |||| |
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| T |
33413183 |
tttccttcagtttttggcaagacatgcttttattatgcta---gaggagatatcaccatctccatatgaagaaaacattgttgatgaacgatatcctttc |
33413279 |
T |
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| Q |
101 |
atgtcacttcttttgaacttggcaagcacatttttgtatatggtcaatacttacatcgttgtacctacggctgacaattactcactgaaccttggagctg |
200 |
Q |
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| T |
33413280 |
atgtcacttcttttgaa--tggcaagcacatttttgtatatggtcactacttacaacattgtacctaagac---caactactcattgaaccttggagctg |
33413374 |
T |
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| Q |
201 |
ctgcaagtgtttgcggtgtcgtcatcggatcaatggctgttgcacaggtttttgcttctgtttatttcagtgcgtggtcgaac |
283 |
Q |
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| T |
33413375 |
ctgcaagtgtttgtggtgtcatcaacggatcaatgactattgcacatgtttttgcttctatttattttagtgtgtgatcgaac |
33413457 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 44 - 192
Target Start/End: Original strand, 33491648 - 33491796
Alignment:
| Q |
44 |
gaggagatatcaccatctccatctgaagaaaacattgtcgatgaaagatatcatttcatgtcacttcttttgaacttggcaagcacatttttgtatatgg |
143 |
Q |
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| T |
33491648 |
gaggagatatcaccatctccatctgaagaaaacattgttgatgaaagatatcatttcatgccacttcttttgaacctgacaagcacatttttgtatatgg |
33491747 |
T |
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| Q |
144 |
tcaatacttacatcgttgtacctacggctgacaattactcactgaacct |
192 |
Q |
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| T |
33491748 |
tcactatttacaacattgtacctaggaccgacaactactcattgaacct |
33491796 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 83 - 283
Target Start/End: Original strand, 19261362 - 19261562
Alignment:
| Q |
83 |
gatgaaagatatcatttcatgtcacttcttttgaacttggcaagcacatttttgtatatggtcaatacttacatcgttgtacctacggctgacaattact |
182 |
Q |
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||||||| ||| ||||| ||||| ||||| |||||||||||| |||||||||||||||| ||||||| || ||| |||| ||||| || || |||||| |
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| T |
19261362 |
gatgaaaaataccattttatgtctcttctgctgaacttggcaaacacatttttgtatatgatcaatacatatatcattgttcctacagcagatgattact |
19261461 |
T |
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| Q |
183 |
cactgaaccttggagctgctgcaagtgtttgcggtgtcgtcatcggatcaatggctgttgcacaggtttttgcttctgtttatttcagtgcgtggtcgaa |
282 |
Q |
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| T |
19261462 |
ctacaagccttggtgctgcgccaacggtttgcggtattgttattggggcaatggctgttgcacaagtgttttcttctgtgtattttagtgcatggtcgaa |
19261561 |
T |
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| Q |
283 |
c |
283 |
Q |
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| T |
19261562 |
c |
19261562 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 95 - 279
Target Start/End: Complemental strand, 44983193 - 44983009
Alignment:
| Q |
95 |
catttcatgtcacttcttttgaacttggcaagcacatttttgtatatggtcaatacttacatcgttgtacctacggctgacaattactcactgaaccttg |
194 |
Q |
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||||| ||||| ||||| || |||||||| | |||||||||||||||||||||||| || ||| |||| ||||| || || ||||||| || |||||| |
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| T |
44983193 |
cattttatgtctcttctattaaacttggctaacacatttttgtatatggtcaatacatatatcattgtccctacagcagatgattactctatgtaccttg |
44983094 |
T |
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| Q |
195 |
gagctgctgcaagtgtttgcggtgtcgtcatcggatcaatggctgttgcacaggtttttgcttctgtttatttcagtgcgtggtc |
279 |
Q |
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| T |
44983093 |
gggctgcaccaacggtttgtggtattgtgatcggtgcaatggccgtcgctcagctattttcgtcggtatatttcagtgcgtggtc |
44983009 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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