View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2932_low_36 (Length: 283)
Name: NF2932_low_36
Description: NF2932
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2932_low_36 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 149; Significance: 9e-79; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 149; E-Value: 9e-79
Query Start/End: Original strand, 109 - 273
Target Start/End: Complemental strand, 5943176 - 5943012
Alignment:
| Q |
109 |
ttcggtttaattttcaattcacaactccataactaaaccaaaccactacaatcgatatgtaaactaatgttttagaaatacgtgtcttgagatatcaaaa |
208 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5943176 |
ttcggtttaattttcaattcacaactccataactaaaccaaaccactgcaatcgatatgtaaactaatgttttagaaatacgtgtcttgagatatcaaaa |
5943077 |
T |
|
| Q |
209 |
tgcttctttgtgtacattttgaggtgtggaggcgaagacttttagtcacctttttgttatctgtg |
273 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||| |
|
|
| T |
5943076 |
ggcttctttgtgtacattttgaggtgtggaggcgaagactgttagtcacctttttgttatgtgtg |
5943012 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 214 - 267
Target Start/End: Original strand, 18506754 - 18506807
Alignment:
| Q |
214 |
ctttgtgtacattttgaggtgtggaggcgaagacttttagtcacctttttgtta |
267 |
Q |
| |
|
|||||||| | ||||| ||||| |||||| ||||| |||||||||||||||||| |
|
|
| T |
18506754 |
ctttgtgtgctttttgtggtgtcgaggcggagactgttagtcacctttttgtta |
18506807 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 210 - 267
Target Start/End: Original strand, 26240743 - 26240800
Alignment:
| Q |
210 |
gcttctttgtgtacattttgaggtgtggaggcgaagacttttagtcacctttttgtta |
267 |
Q |
| |
|
|||||||||||| |||||| |||| ||||||| ||||| |||||||| ||||||||| |
|
|
| T |
26240743 |
gcttctttgtgtgtattttgtggtgcggaggcggagactgttagtcacttttttgtta |
26240800 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University