View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2932_low_47 (Length: 251)
Name: NF2932_low_47
Description: NF2932
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2932_low_47 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 133; Significance: 3e-69; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 101 - 251
Target Start/End: Original strand, 12444740 - 12444892
Alignment:
| Q |
101 |
taatttttatctttatttatcaatgctattaagtcaccagttttaacaatcaaaggtatggttcaaatagtaaatgaatttcctaaaattcaaa-taatc |
199 |
Q |
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| T |
12444740 |
taatttttatctttatttatcaatgctattaagtcaccagttttaacaatcaaaggtatggttcaaatagtaaatgaatttcctaaaagtcaaattaatc |
12444839 |
T |
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| Q |
200 |
aaaaatattattatc-gaaataattcttataacaagagttgacattcttctta |
251 |
Q |
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| T |
12444840 |
aaaaatattattatctgaaataattcttataacaagagttgacattcttctta |
12444892 |
T |
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Target: chr5; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 12 - 109
Target Start/End: Original strand, 12444142 - 12444239
Alignment:
| Q |
12 |
cagagacataatatataataataatttgaacattagttcatcacattgtagaatctaatctttttcgttagaccaaacctctatcgatataattttta |
109 |
Q |
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| T |
12444142 |
cagacacataatatataataataatttgaacattagttcatcacattgtggaatctaatctttttcgttagaccaaacctctatcgatataattttta |
12444239 |
T |
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